data_A1EJS # _chem_comp.id A1EJS _chem_comp.name "(2S)-2-azanyl-6-[[2-[[4-[(5-fluoranyl-2-methoxycarbonyl-phenyl)amino]-2-[[3-(1-methylimidazol-2-yl)phenyl]methylamino]pyrimidin-5-yl]amino]-3,4-bis(oxidanylidene)cyclobuten-1-yl]amino]hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C33 H34 F N9 O6" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-17 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 671.678 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EJS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9LHJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EJS C22 C1 C 0 1 Y N N N N N 26.691 1.000 -26.330 -0.601 -0.674 0.666 C22 A1EJS 1 A1EJS C25 C2 C 0 1 Y N N N N N 26.283 -0.025 -28.662 -0.741 -3.062 0.415 C25 A1EJS 2 A1EJS C30 C3 C 0 1 Y N N N N N 25.241 -0.879 -28.313 -1.911 -3.146 1.156 C30 A1EJS 3 A1EJS C29 C4 C 0 1 Y N N N N N 24.604 -1.608 -29.307 -2.661 -4.308 1.138 C29 A1EJS 4 A1EJS C28 C5 C 0 1 Y N N N N N 24.988 -1.480 -30.638 -2.250 -5.397 0.380 C28 A1EJS 5 A1EJS C27 C6 C 0 1 Y N N N N N 26.028 -0.620 -30.974 -1.092 -5.331 -0.361 C27 A1EJS 6 A1EJS C26 C7 C 0 1 Y N N N N N 26.679 0.084 -29.981 -0.326 -4.161 -0.357 C26 A1EJS 7 A1EJS C18 C8 C 0 1 Y N N N N N 27.306 1.912 -24.188 -0.501 1.695 1.005 C18 A1EJS 8 A1EJS C17 C9 C 0 1 Y N N N N N 27.604 1.662 -25.509 0.161 0.498 0.775 C17 A1EJS 9 A1EJS O15 O1 O 0 1 N N N N N N 31.316 3.671 -27.803 0.715 3.107 -1.124 O15 A1EJS 10 A1EJS O14 O2 O 0 1 N N N N N N 29.158 5.672 -29.114 3.821 3.821 -1.610 O14 A1EJS 11 A1EJS C13 C10 C 0 1 N N N N N N 29.026 3.250 -26.849 2.215 1.458 -0.017 C13 A1EJS 12 A1EJS C10 C11 C 0 1 N N N N N N 28.047 4.278 -27.364 3.562 1.765 -0.233 C10 A1EJS 13 A1EJS CE C12 C 0 1 N N N N N N 25.969 5.356 -28.182 6.019 1.786 -0.268 CE A1EJS 14 A1EJS CD C13 C 0 1 N N N N N N 25.333 4.717 -29.422 7.178 0.951 0.281 CD A1EJS 15 A1EJS CG C14 C 0 1 N N N N N N 24.835 3.269 -29.288 8.506 1.577 -0.149 CG A1EJS 16 A1EJS CB C15 C 0 1 N N N N N N 24.565 2.823 -30.723 9.665 0.742 0.400 CB A1EJS 17 A1EJS CA C16 C 0 1 N N S N Y N 23.603 1.661 -30.947 10.993 1.368 -0.030 CA A1EJS 18 A1EJS C C17 C 0 1 N N N N Y Y 22.191 2.087 -30.584 12.132 0.619 0.611 C A1EJS 19 A1EJS C11 C18 C 0 1 N N N N N N 29.132 4.829 -28.286 3.208 2.949 -1.022 C11 A1EJS 20 A1EJS C12 C19 C 0 1 N N N N N N 30.148 3.864 -27.682 1.783 2.622 -0.799 C12 A1EJS 21 A1EJS C20 C20 C 0 1 Y N N N N N 25.290 0.877 -24.573 -2.513 0.569 1.005 C20 A1EJS 22 A1EJS C31 C21 C 0 1 N N N N N N 27.787 1.050 -30.373 0.913 -4.085 -1.147 C31 A1EJS 23 A1EJS C34 C22 C 0 1 N N N N N N 29.068 1.216 -32.371 2.507 -4.971 -2.688 C34 A1EJS 24 A1EJS C35 C23 C 0 1 N N N N N N 23.671 1.049 -22.776 -4.568 1.890 1.368 C35 A1EJS 25 A1EJS C36 C24 C 0 1 Y N N N N N 24.070 0.150 -21.600 -6.055 1.664 1.457 C36 A1EJS 26 A1EJS C37 C25 C 0 1 Y N N N N N 24.565 0.750 -20.452 -6.639 1.387 2.681 C37 A1EJS 27 A1EJS C38 C26 C 0 1 Y N N N N N 24.895 -0.030 -19.360 -8.003 1.179 2.771 C38 A1EJS 28 A1EJS C39 C27 C 0 1 Y N N N N N 24.736 -1.402 -19.413 -8.791 1.247 1.640 C39 A1EJS 29 A1EJS C40 C28 C 0 1 Y N N N N N 24.245 -2.007 -20.566 -8.208 1.526 0.404 C40 A1EJS 30 A1EJS C41 C29 C 0 1 Y N N N N N 23.911 -1.223 -21.662 -6.832 1.740 0.320 C41 A1EJS 31 A1EJS C42 C30 C 0 1 Y N N N N N 24.064 -3.522 -20.576 -9.047 1.600 -0.812 C42 A1EJS 32 A1EJS C44 C31 C 0 1 Y N N N N N 24.440 -5.604 -20.339 -10.766 1.790 -2.111 C44 A1EJS 33 A1EJS C45 C32 C 0 1 Y N N N N N 23.135 -5.438 -20.764 -9.694 1.622 -2.912 C45 A1EJS 34 A1EJS C47 C33 C 0 1 N N N N N N 21.673 -3.550 -21.313 -7.212 1.310 -2.525 C47 A1EJS 35 A1EJS F48 F1 F 0 1 N N N N N N 23.564 -2.425 -28.974 -3.799 -4.384 1.862 F48 A1EJS 36 A1EJS NZ N1 N 0 1 N N N N N N 26.609 4.366 -27.341 4.747 1.186 0.144 NZ A1EJS 37 A1EJS N N2 N 0 1 N N N Y Y N 23.705 1.314 -32.345 11.119 1.294 -1.492 N A1EJS 38 A1EJS N16 N3 N 0 1 N N N N N N 28.890 2.064 -26.042 1.557 0.461 0.656 N16 A1EJS 39 A1EJS N19 N4 N 0 1 Y N N N N N 26.135 1.502 -23.765 -1.822 1.693 1.113 N19 A1EJS 40 A1EJS N21 N5 N 0 1 Y N N N N N 25.539 0.622 -25.829 -1.922 -0.596 0.786 N21 A1EJS 41 A1EJS N23 N6 N 0 1 N N N N N N 24.032 0.454 -24.038 -3.893 0.613 1.125 N23 A1EJS 42 A1EJS N24 N7 N 0 1 N N N N N N 27.046 0.772 -27.712 0.014 -1.896 0.431 N24 A1EJS 43 A1EJS N43 N8 N 0 1 Y N N N N N 24.990 -4.404 -20.234 -10.349 1.775 -0.840 N43 A1EJS 44 A1EJS N46 N9 N 0 1 Y N N N N N 22.932 -4.142 -20.889 -8.600 1.503 -2.098 N46 A1EJS 45 A1EJS O O3 O 0 1 N N N N Y Y 21.517 2.613 -31.378 12.745 -0.206 -0.024 O A1EJS 46 A1EJS O32 O4 O 0 1 N N N N N N 27.858 1.454 -31.713 1.273 -5.116 -1.937 O32 A1EJS 47 A1EJS O33 O5 O 0 1 N N N N N N 28.500 1.518 -29.548 1.612 -3.092 -1.088 O33 A1EJS 48 A1EJS H301 H1 H 0 0 N N N N N N 24.932 -0.973 -27.282 -2.237 -2.303 1.748 H301 A1EJS 49 A1EJS H281 H2 H 0 0 N N N N N N 24.481 -2.045 -31.406 -2.842 -6.300 0.373 H281 A1EJS 50 A1EJS H271 H3 H 0 0 N N N N N N 26.325 -0.504 -32.006 -0.777 -6.181 -0.948 H271 A1EJS 51 A1EJS H181 H4 H 0 0 N N N N N N 28.001 2.419 -23.535 0.054 2.617 1.095 H181 A1EJS 52 A1EJS HE2 H5 H 0 1 N N N N N N 26.722 6.090 -28.505 6.085 2.801 0.123 HE2 A1EJS 53 A1EJS HE3 H6 H 0 1 N N N N N N 25.186 5.865 -27.601 6.073 1.811 -1.356 HE3 A1EJS 54 A1EJS HD3 H7 H 0 1 N N N N N N 26.083 4.736 -30.226 7.124 0.925 1.370 HD3 A1EJS 55 A1EJS HD2 H8 H 0 1 N N N N N N 24.472 5.338 -29.710 7.111 -0.064 -0.110 HD2 A1EJS 56 A1EJS HG2 H9 H 0 1 N N N N N N 23.914 3.229 -28.688 8.560 1.602 -1.237 HG2 A1EJS 57 A1EJS HG3 H10 H 0 1 N N N N N N 25.604 2.635 -28.822 8.572 2.592 0.242 HG3 A1EJS 58 A1EJS HB2 H11 H 0 1 N N N N N N 25.532 2.536 -31.163 9.611 0.717 1.488 HB2 A1EJS 59 A1EJS HB3 H12 H 0 1 N N N N N N 24.160 3.691 -31.264 9.598 -0.273 0.009 HB3 A1EJS 60 A1EJS HA H13 H 0 1 N N N N Y N 23.903 0.812 -30.316 11.021 2.412 0.285 HA A1EJS 61 A1EJS H341 H15 H 0 0 N N N N N N 28.999 1.575 -33.408 2.431 -4.108 -3.350 H341 A1EJS 62 A1EJS H343 H16 H 0 0 N N N N N N 29.878 1.749 -31.852 3.338 -4.828 -1.997 H343 A1EJS 63 A1EJS H342 H17 H 0 0 N N N N N N 29.280 0.137 -32.370 2.679 -5.870 -3.281 H342 A1EJS 64 A1EJS H352 H18 H 0 0 N N N N N N 24.184 2.017 -22.677 -4.353 2.576 0.549 H352 A1EJS 65 A1EJS H351 H19 H 0 0 N N N N N N 22.583 1.207 -22.753 -4.208 2.319 2.304 H351 A1EJS 66 A1EJS H371 H20 H 0 0 N N N N N N 24.692 1.822 -20.412 -6.027 1.333 3.569 H371 A1EJS 67 A1EJS H381 H21 H 0 0 N N N N N N 25.278 0.434 -18.463 -8.453 0.963 3.729 H381 A1EJS 68 A1EJS H391 H22 H 0 0 N N N N N N 24.994 -2.007 -18.556 -9.856 1.084 1.712 H391 A1EJS 69 A1EJS H411 H23 H 0 0 N N N N N N 23.528 -1.684 -22.561 -6.376 1.961 -0.633 H411 A1EJS 70 A1EJS H441 H24 H 0 0 N N N N N N 24.925 -6.546 -20.130 -11.786 1.918 -2.440 H441 A1EJS 71 A1EJS H451 H25 H 0 0 N N N N N N 22.418 -6.222 -20.957 -9.698 1.589 -3.991 H451 A1EJS 72 A1EJS H472 H26 H 0 0 N N N N N N 21.771 -2.455 -21.334 -6.712 2.277 -2.582 H472 A1EJS 73 A1EJS H473 H27 H 0 0 N N N N N N 21.417 -3.914 -22.319 -6.695 0.675 -1.806 H473 A1EJS 74 A1EJS H471 H28 H 0 0 N N N N N N 20.878 -3.834 -20.607 -7.197 0.835 -3.506 H471 A1EJS 75 A1EJS HZ1 H29 H 0 1 N N N N N N 26.339 4.560 -26.398 4.743 0.380 0.683 HZ1 A1EJS 76 A1EJS H H30 H 0 1 N N N Y Y N 23.090 0.552 -32.545 11.095 0.337 -1.809 H A1EJS 77 A1EJS H2 H31 H 0 1 N N N Y Y N 23.451 2.103 -32.904 10.403 1.843 -1.945 H2 A1EJS 78 A1EJS H161 H33 H 0 0 N N N N N N 29.698 1.508 -25.846 2.058 -0.271 1.049 H161 A1EJS 79 A1EJS H231 H34 H 0 0 N N N N N N 23.321 0.682 -24.703 -4.413 -0.203 1.048 H231 A1EJS 80 A1EJS H241 H35 H 0 0 N N N N N N 27.888 1.198 -28.044 0.971 -1.935 0.277 H241 A1EJS 81 A1EJS OXT OXT O 0 1 N N N N Y Y ? ? ? 12.466 0.868 1.887 OXT A1EJS 82 A1EJS H1 H37 H 0 1 N N N N N N ? ? ? 13.204 0.363 2.254 H1 A1EJS 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EJS C34 O32 SING N N 1 A1EJS N CA SING N N 2 A1EJS O32 C31 SING N N 3 A1EJS O C DOUB N N 4 A1EJS C27 C28 DOUB Y N 5 A1EJS C27 C26 SING Y N 6 A1EJS CA CB SING N N 7 A1EJS CA C SING N N 8 A1EJS CB CG SING N N 9 A1EJS C28 C29 SING Y N 10 A1EJS C31 C26 SING N N 11 A1EJS C31 O33 DOUB N N 12 A1EJS C26 C25 DOUB Y N 13 A1EJS CD CG SING N N 14 A1EJS CD CE SING N N 15 A1EJS C29 F48 SING N N 16 A1EJS C29 C30 DOUB Y N 17 A1EJS O14 C11 DOUB N N 18 A1EJS C25 C30 SING Y N 19 A1EJS C25 N24 SING N N 20 A1EJS C11 C12 SING N N 21 A1EJS C11 C10 SING N N 22 A1EJS CE NZ SING N N 23 A1EJS O15 C12 DOUB N N 24 A1EJS N24 C22 SING N N 25 A1EJS C12 C13 SING N N 26 A1EJS C10 NZ SING N N 27 A1EJS C10 C13 DOUB N N 28 A1EJS C13 N16 SING N N 29 A1EJS C22 N21 DOUB Y N 30 A1EJS C22 C17 SING Y N 31 A1EJS N16 C17 SING N N 32 A1EJS N21 C20 SING Y N 33 A1EJS C17 C18 DOUB Y N 34 A1EJS C20 N23 SING N N 35 A1EJS C20 N19 DOUB Y N 36 A1EJS C18 N19 SING Y N 37 A1EJS N23 C35 SING N N 38 A1EJS C35 C36 SING N N 39 A1EJS C41 C36 DOUB Y N 40 A1EJS C41 C40 SING Y N 41 A1EJS C36 C37 SING Y N 42 A1EJS C47 N46 SING N N 43 A1EJS N46 C45 SING Y N 44 A1EJS N46 C42 SING Y N 45 A1EJS C45 C44 DOUB Y N 46 A1EJS C42 C40 SING N N 47 A1EJS C42 N43 DOUB Y N 48 A1EJS C40 C39 DOUB Y N 49 A1EJS C37 C38 DOUB Y N 50 A1EJS C44 N43 SING Y N 51 A1EJS C39 C38 SING Y N 52 A1EJS C30 H301 SING N N 53 A1EJS C28 H281 SING N N 54 A1EJS C27 H271 SING N N 55 A1EJS C18 H181 SING N N 56 A1EJS CE HE2 SING N N 57 A1EJS CE HE3 SING N N 58 A1EJS CD HD3 SING N N 59 A1EJS CD HD2 SING N N 60 A1EJS CG HG2 SING N N 61 A1EJS CG HG3 SING N N 62 A1EJS CB HB2 SING N N 63 A1EJS CB HB3 SING N N 64 A1EJS CA HA SING N N 65 A1EJS C34 H341 SING N N 66 A1EJS C34 H343 SING N N 67 A1EJS C34 H342 SING N N 68 A1EJS C35 H352 SING N N 69 A1EJS C35 H351 SING N N 70 A1EJS C37 H371 SING N N 71 A1EJS C38 H381 SING N N 72 A1EJS C39 H391 SING N N 73 A1EJS C41 H411 SING N N 74 A1EJS C44 H441 SING N N 75 A1EJS C45 H451 SING N N 76 A1EJS C47 H472 SING N N 77 A1EJS C47 H473 SING N N 78 A1EJS C47 H471 SING N N 79 A1EJS NZ HZ1 SING N N 80 A1EJS N H SING N N 81 A1EJS N H2 SING N N 82 A1EJS N16 H161 SING N N 83 A1EJS N23 H231 SING N N 84 A1EJS N24 H241 SING N N 85 A1EJS C OXT SING N N 86 A1EJS OXT H1 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EJS InChI InChI 1.06 "InChI=1S/C33H34FN9O6/c1-43-13-12-37-30(43)19-7-5-6-18(14-19)16-38-33-39-17-24(29(42-33)41-23-15-20(34)9-10-21(23)32(48)49-2)40-26-25(27(44)28(26)45)36-11-4-3-8-22(35)31(46)47/h5-7,9-10,12-15,17,22,36,40H,3-4,8,11,16,35H2,1-2H3,(H,46,47)(H2,38,39,41,42)/t22-/m0/s1" A1EJS InChIKey InChI 1.06 WBHWAJOSOYMMBR-QFIPXVFZSA-N A1EJS SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1ccc(F)cc1Nc2nc(NCc3cccc(c3)c4nccn4C)ncc2NC5=C(NCCCC[C@H](N)C(O)=O)C(=O)C5=O" A1EJS SMILES CACTVS 3.385 "COC(=O)c1ccc(F)cc1Nc2nc(NCc3cccc(c3)c4nccn4C)ncc2NC5=C(NCCCC[CH](N)C(O)=O)C(=O)C5=O" A1EJS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccnc1c2cccc(c2)CNc3ncc(c(n3)Nc4cc(ccc4C(=O)OC)F)NC5=C(C(=O)C5=O)NCCCC[C@@H](C(=O)O)N" A1EJS SMILES "OpenEye OEToolkits" 2.0.7 "Cn1ccnc1c2cccc(c2)CNc3ncc(c(n3)Nc4cc(ccc4C(=O)OC)F)NC5=C(C(=O)C5=O)NCCCCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1EJS _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[2-[[4-[(5-fluoranyl-2-methoxycarbonyl-phenyl)amino]-2-[[3-(1-methylimidazol-2-yl)phenyl]methylamino]pyrimidin-5-yl]amino]-3,4-bis(oxidanylidene)cyclobuten-1-yl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EJS "Create component" 2025-01-17 PDBC A1EJS "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EJS _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #