data_A1EK4 # _chem_comp.id A1EK4 _chem_comp.name "1-[[2-[5-(aminomethyl)thiophen-2-yl]oxy-5-chloranyl-4-fluoranyl-phenyl]methylidene]-6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(2-oxidanylidene-1~{H}-pyridin-3-yl)methyl]-1$l^{4},3,5-triazinane-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H23 Cl2 F N8 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-02 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 669.514 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EK4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9LLL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EK4 C12 C1 C 0 1 N N N N N N -10.017 33.203 -18.949 -0.839 1.096 1.026 C12 A1EK4 1 A1EK4 C13 C2 C 0 1 Y N N N N N -8.680 33.619 -18.328 -1.112 1.395 -0.426 C13 A1EK4 2 A1EK4 C14 C3 C 0 1 Y N N N N N -7.507 32.982 -18.721 -2.161 0.763 -1.078 C14 A1EK4 3 A1EK4 C15 C4 C 0 1 Y N N N N N -6.302 33.362 -18.155 -2.412 1.039 -2.415 C15 A1EK4 4 A1EK4 C16 C5 C 0 1 Y N N N N N -6.265 34.357 -17.194 -1.616 1.944 -3.094 C16 A1EK4 5 A1EK4 C17 C6 C 0 1 Y N N N N N -7.426 34.981 -16.797 -0.569 2.574 -2.439 C17 A1EK4 6 A1EK4 C18 C7 C 0 1 Y N N N N N -8.635 34.615 -17.363 -0.322 2.303 -1.105 C18 A1EK4 7 A1EK4 C21 C8 C 0 1 Y N N N N N -11.468 36.891 -20.531 3.306 0.966 0.860 C21 A1EK4 8 A1EK4 C22 C9 C 0 1 Y N N N N N -12.146 36.915 -21.757 3.876 0.177 -0.118 C22 A1EK4 9 A1EK4 C23 C10 C 0 1 Y N N N N N -12.650 38.141 -22.242 5.278 0.167 -0.268 C23 A1EK4 10 A1EK4 C26 C11 C 0 1 Y N N N N N -11.290 38.072 -19.786 4.099 1.766 1.708 C26 A1EK4 11 A1EK4 C30 C12 C 0 1 N N N N N N -14.278 40.646 -24.320 8.627 -0.556 -1.446 C30 A1EK4 12 A1EK4 C33 C13 C 0 1 Y N N N N N -7.612 30.668 -19.220 -4.040 0.348 0.235 C33 A1EK4 13 A1EK4 C35 C14 C 0 1 Y N N N N N -7.411 28.396 -18.012 -5.960 1.617 1.235 C35 A1EK4 14 A1EK4 C02 C15 C 0 1 N N N N N N -11.622 34.998 -18.902 1.287 -0.153 1.115 C02 A1EK4 15 A1EK4 C04 C16 C 0 1 N N N N N N -11.875 33.321 -17.362 -0.750 -1.331 1.252 C04 A1EK4 16 A1EK4 C06 C17 C 0 1 N N N N N N -13.353 35.080 -17.415 1.277 -2.500 1.335 C06 A1EK4 17 A1EK4 C07 C18 C 0 1 N N N N N N -13.724 33.392 -15.763 -0.802 -3.750 1.479 C07 A1EK4 18 A1EK4 C08 C19 C 0 1 N N N N N N -14.619 32.249 -16.258 -1.072 -4.315 0.108 C08 A1EK4 19 A1EK4 C24 C20 C 0 1 Y N N N N N -12.476 39.306 -21.509 6.095 1.002 0.626 C24 A1EK4 20 A1EK4 C25 C21 C 0 1 Y N N N N N -11.791 39.284 -20.270 5.449 1.791 1.603 C25 A1EK4 21 A1EK4 C27 C22 C 0 1 Y N N N N N -13.379 38.543 -23.430 6.160 -0.481 -1.113 C27 A1EK4 22 A1EK4 C36 C23 C 0 1 Y N N N N N -8.379 28.427 -19.028 -5.921 0.322 1.549 C36 A1EK4 23 A1EK4 C37 C24 C 0 1 Y N N N N N -8.492 29.684 -19.705 -4.862 -0.382 0.999 C37 A1EK4 24 A1EK4 C38 C25 C 0 1 N N N N N N -7.073 27.199 -17.127 -7.008 2.593 1.705 C38 A1EK4 25 A1EK4 C40 C26 C 0 1 N N N N N N -14.949 31.214 -15.391 -2.195 -3.895 -0.625 C40 A1EK4 26 A1EK4 C42 C27 C 0 1 N N N N N N -16.178 30.163 -17.037 -1.591 -5.325 -2.391 C42 A1EK4 27 A1EK4 C43 C28 C 0 1 N N N N N N -15.892 31.163 -17.960 -0.497 -5.746 -1.714 C43 A1EK4 28 A1EK4 C44 C29 C 0 1 N N N N N N -15.092 32.229 -17.562 -0.225 -5.235 -0.437 C44 A1EK4 29 A1EK4 F20 F1 F 0 1 N N N N N N -5.087 34.741 -16.626 -1.859 2.214 -4.395 F20 A1EK4 30 A1EK4 N01 N1 N 0 1 N N N N N N -12.686 35.604 -18.424 1.968 -1.349 1.218 N01 A1EK4 31 A1EK4 N03 N2 N 0 1 N N N N N N -11.193 33.859 -18.378 -0.093 -0.160 1.133 N03 A1EK4 32 A1EK4 N05 N3 N 0 1 N N N N N N -12.951 33.939 -16.881 -0.069 -2.488 1.351 N05 A1EK4 33 A1EK4 N10 N4 N 0 1 N N N N N N -10.937 35.633 -20.017 1.943 0.976 1.006 N10 A1EK4 34 A1EK4 N28 N5 N 0 1 Y N N N N N -13.575 39.838 -23.336 7.403 -0.095 -0.786 N28 A1EK4 35 A1EK4 N29 N6 N 0 1 Y N N N N N -13.048 40.308 -22.206 7.356 0.811 0.279 N29 A1EK4 36 A1EK4 N39 N7 N 0 1 N N N N N N -6.829 26.302 -16.475 -6.575 3.204 2.969 N39 A1EK4 37 A1EK4 N41 N8 N 0 1 N N N N N N -15.709 30.219 -15.806 -2.430 -4.405 -1.849 N41 A1EK4 38 A1EK4 O09 O1 O 0 1 N N N N N N -14.481 35.740 -16.932 1.872 -3.556 1.427 O09 A1EK4 39 A1EK4 O11 O2 O 0 1 N N N N N N -11.452 32.117 -16.794 -1.965 -1.342 1.269 O11 A1EK4 40 A1EK4 O32 O3 O 0 1 N N N N N N -7.514 31.981 -19.711 -2.942 -0.126 -0.409 O32 A1EK4 41 A1EK4 O45 O4 O 0 1 N N N N N N -14.459 31.238 -14.079 -2.959 -3.069 -0.151 O45 A1EK4 42 A1EK4 S34 S1 S 0 1 Y N N N N N -6.718 29.940 -17.978 -4.604 2.013 0.187 S34 A1EK4 43 A1EK4 CL19 CL1 CL 0 0 N N N N N N -7.323 36.260 -15.558 0.430 3.709 -3.292 CL19 A1EK4 44 A1EK4 CL31 CL2 CL 0 0 N N N N N N -10.423 38.018 -18.227 3.325 2.744 2.915 CL31 A1EK4 45 A1EK4 H122 H1 H 0 0 N N N N N N -10.133 32.117 -18.815 -0.251 1.906 1.459 H122 A1EK4 46 A1EK4 H151 H3 H 0 0 N N N N N N -5.387 32.880 -18.465 -3.228 0.548 -2.924 H151 A1EK4 47 A1EK4 H181 H4 H 0 0 N N N N N N -9.546 35.106 -17.053 0.491 2.797 -0.595 H181 A1EK4 48 A1EK4 H221 H5 H 0 0 N N N N N N -12.281 36.006 -22.324 3.254 -0.427 -0.762 H221 A1EK4 49 A1EK4 H301 H6 H 0 0 N N N N N N -14.304 41.693 -23.985 8.865 0.110 -2.276 H301 A1EK4 50 A1EK4 H303 H7 H 0 0 N N N N N N -13.756 40.583 -25.286 9.449 -0.551 -0.730 H303 A1EK4 51 A1EK4 H302 H8 H 0 0 N N N N N N -15.306 40.272 -24.434 8.479 -1.568 -1.822 H302 A1EK4 52 A1EK4 H071 H9 H 0 0 N N N N N N -13.035 33.010 -14.995 -1.748 -3.570 1.990 H071 A1EK4 53 A1EK4 H072 H10 H 0 0 N N N N N N -14.351 34.185 -15.330 -0.207 -4.459 2.054 H072 A1EK4 54 A1EK4 H251 H11 H 0 0 N N N N N N -11.657 40.194 -19.705 6.031 2.411 2.270 H251 A1EK4 55 A1EK4 H271 H12 H 0 0 N N N N N N -13.699 37.900 -24.237 5.896 -1.174 -1.898 H271 A1EK4 56 A1EK4 H361 H13 H 0 0 N N N N N N -8.989 27.572 -19.279 -6.660 -0.143 2.185 H361 A1EK4 57 A1EK4 H371 H14 H 0 0 N N N N N N -9.188 29.860 -20.512 -4.712 -1.437 1.173 H371 A1EK4 58 A1EK4 H421 H15 H 0 0 N N N N N N -16.794 29.327 -17.333 -1.796 -5.721 -3.374 H421 A1EK4 59 A1EK4 H431 H16 H 0 0 N N N N N N -16.283 31.113 -18.965 0.165 -6.474 -2.157 H431 A1EK4 60 A1EK4 H441 H17 H 0 0 N N N N N N -14.845 33.022 -18.252 0.646 -5.566 0.109 H441 A1EK4 61 A1EK4 H2 H2 H 0 1 N N N N N N -6.003 27.336 -17.344 -7.143 3.370 0.953 H2 A1EK4 62 A1EK4 H3 H20 H 0 1 N N N N N N -7.343 27.780 -16.233 -7.951 2.068 1.859 H3 A1EK4 63 A1EK4 H4 H21 H 0 1 N N N N N N -12.991 36.467 -18.828 2.938 -1.362 1.207 H4 A1EK4 64 A1EK4 H5 H22 H 0 1 N N N N N N -6.163 26.567 -15.778 -5.672 3.642 2.868 H5 A1EK4 65 A1EK4 H6 H23 H 0 1 N N N N N N -7.664 25.976 -16.031 -7.261 3.863 3.305 H6 A1EK4 66 A1EK4 H7 H24 H 0 1 N N N N N N -15.937 29.484 -15.167 -3.209 -4.114 -2.348 H7 A1EK4 67 A1EK4 H8 H25 H 0 1 N N N N N N -9.983 33.438 -20.023 -1.783 1.005 1.562 H8 A1EK4 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EK4 C30 N28 SING N N 1 A1EK4 C27 N28 SING Y N 2 A1EK4 C27 C23 DOUB Y N 3 A1EK4 N28 N29 SING Y N 4 A1EK4 C23 C22 SING Y N 5 A1EK4 C23 C24 SING Y N 6 A1EK4 N29 C24 DOUB Y N 7 A1EK4 C22 C21 DOUB Y N 8 A1EK4 C24 C25 SING Y N 9 A1EK4 C21 N10 SING N N 10 A1EK4 C21 C26 SING Y N 11 A1EK4 C25 C26 DOUB Y N 12 A1EK4 N10 C02 DOUB N N 13 A1EK4 C26 CL31 SING N N 14 A1EK4 O32 C33 SING N N 15 A1EK4 O32 C14 SING N N 16 A1EK4 C37 C33 DOUB Y N 17 A1EK4 C37 C36 SING Y N 18 A1EK4 C33 S34 SING Y N 19 A1EK4 C36 C35 DOUB Y N 20 A1EK4 C12 N03 SING N N 21 A1EK4 C12 C13 SING N N 22 A1EK4 C02 N01 SING N N 23 A1EK4 C02 N03 SING N N 24 A1EK4 C14 C13 DOUB Y N 25 A1EK4 C14 C15 SING Y N 26 A1EK4 N01 C06 SING N N 27 A1EK4 N03 C04 SING N N 28 A1EK4 C13 C18 SING Y N 29 A1EK4 C15 C16 DOUB Y N 30 A1EK4 C35 S34 SING Y N 31 A1EK4 C35 C38 SING N N 32 A1EK4 C43 C44 SING N N 33 A1EK4 C43 C42 DOUB N N 34 A1EK4 C44 C08 DOUB N N 35 A1EK4 C06 O09 DOUB N N 36 A1EK4 C06 N05 SING N N 37 A1EK4 C18 C17 DOUB Y N 38 A1EK4 C04 N05 SING N N 39 A1EK4 C04 O11 DOUB N N 40 A1EK4 C16 C17 SING Y N 41 A1EK4 C16 F20 SING N N 42 A1EK4 C38 N39 SING N N 43 A1EK4 C42 N41 SING N N 44 A1EK4 N05 C07 SING N N 45 A1EK4 C17 CL19 SING N N 46 A1EK4 C08 C07 SING N N 47 A1EK4 C08 C40 SING N N 48 A1EK4 N41 C40 SING N N 49 A1EK4 C40 O45 DOUB N N 50 A1EK4 C12 H122 SING N N 51 A1EK4 C15 H151 SING N N 52 A1EK4 C18 H181 SING N N 53 A1EK4 C22 H221 SING N N 54 A1EK4 C30 H301 SING N N 55 A1EK4 C30 H303 SING N N 56 A1EK4 C30 H302 SING N N 57 A1EK4 C07 H071 SING N N 58 A1EK4 C07 H072 SING N N 59 A1EK4 C25 H251 SING N N 60 A1EK4 C27 H271 SING N N 61 A1EK4 C36 H361 SING N N 62 A1EK4 C37 H371 SING N N 63 A1EK4 C42 H421 SING N N 64 A1EK4 C43 H431 SING N N 65 A1EK4 C44 H441 SING N N 66 A1EK4 C38 H2 SING N N 67 A1EK4 C38 H3 SING N N 68 A1EK4 N01 H4 SING N N 69 A1EK4 N39 H5 SING N N 70 A1EK4 N39 H6 SING N N 71 A1EK4 N41 H7 SING N N 72 A1EK4 C12 H8 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EK4 InChI InChI 1.06 "InChI=1S/C29H23Cl2FN8O4S/c1-38-12-16-8-23(20(31)9-22(16)37-38)35-27-36-28(42)40(13-15-3-2-6-34-26(15)41)29(43)39(27)14-17-7-19(30)21(32)10-24(17)44-25-5-4-18(11-33)45-25/h2-10,12H,11,13-14,33H2,1H3,(H,34,41)(H,35,36,42)" A1EK4 InChIKey InChI 1.06 ILCULUPLVYBALS-UHFFFAOYSA-N A1EK4 SMILES_CANONICAL CACTVS 3.385 "Cn1cc2cc(N=C3NC(=O)N(CC4=CC=CNC4=O)C(=O)N3Cc5cc(Cl)c(F)cc5Oc6sc(CN)cc6)c(Cl)cc2n1" A1EK4 SMILES CACTVS 3.385 "Cn1cc2cc(N=C3NC(=O)N(CC4=CC=CNC4=O)C(=O)N3Cc5cc(Cl)c(F)cc5Oc6sc(CN)cc6)c(Cl)cc2n1" A1EK4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc2cc(c(cc2n1)Cl)/N=C/3\NC(=O)N(C(=O)N3Cc4cc(c(cc4Oc5ccc(s5)CN)F)Cl)CC6=CC=CNC6=O" A1EK4 SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc2cc(c(cc2n1)Cl)N=C3NC(=O)N(C(=O)N3Cc4cc(c(cc4Oc5ccc(s5)CN)F)Cl)CC6=CC=CNC6=O" # _pdbx_chem_comp_identifier.comp_id A1EK4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{E})-1-[[2-[5-(aminomethyl)thiophen-2-yl]oxy-5-chloranyl-4-fluoranyl-phenyl]methyl]-6-(6-chloranyl-2-methyl-indazol-5-yl)imino-3-[(2-oxidanylidene-1~{H}-pyridin-3-yl)methyl]-1,3,5-triazinane-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EK4 "Create component" 2025-02-02 PDBC A1EK4 "Modify component atom id" 2026-01-12 PDBC A1EK4 "Initial release" 2026-01-21 RCSB #