data_A1EKQ # _chem_comp.id A1EKQ _chem_comp.name "(S)-N-((2R,3S,3a'R,4R,11'S)-3-((2-amino-6-oxo-1,6-dihydro-7H-purin-7-yl)methyl)-3,7',11'-trihydroxy-5',8'-dioxo-3a',4,5,5',8',9',10',11'-octahydro-3H,3'H-spiro[furan-2,2'-furo[2,3,4-de]naphtho[2,3-h]chromen]-4-yl)-1-methylpiperidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 N7 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-24 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 701.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EKQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KLX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EKQ C10 C1 C 0 1 Y N N N N N -10.947 -6.877 -5.118 -1.392 2.259 -0.727 C10 A1EKQ 1 A1EKQ C11 C2 C 0 1 Y N N N N N -11.005 -8.432 -1.469 -4.071 -0.122 0.342 C11 A1EKQ 2 A1EKQ C12 C3 C 0 1 Y N N N N N -10.881 -7.180 -0.727 -3.883 -1.154 -0.566 C12 A1EKQ 3 A1EKQ C13 C4 C 0 1 Y N N N N N -10.790 -5.938 -1.381 -2.953 -0.951 -1.581 C13 A1EKQ 4 A1EKQ C14 C5 C 0 1 Y N N N N N -10.809 -5.819 -2.839 -2.085 0.098 -1.642 C14 A1EKQ 5 A1EKQ C15 C6 C 0 1 N N R N N N -10.675 -4.842 -0.517 -3.013 -2.128 -2.534 C15 A1EKQ 6 A1EKQ C16 C7 C 0 1 N N N N N N -11.216 -3.626 -1.248 -1.559 -2.546 -2.728 C16 A1EKQ 7 A1EKQ C17 C8 C 0 1 N N R N N N -10.751 -3.486 -2.712 -0.600 -1.384 -2.750 C17 A1EKQ 8 A1EKQ C19 C9 C 0 1 N N S N N N -11.196 -2.115 -3.256 0.452 -1.586 -1.633 C19 A1EKQ 9 A1EKQ C20 C10 C 0 1 N N R N N N -9.899 -1.636 -3.952 1.777 -1.119 -2.275 C20 A1EKQ 10 A1EKQ C21 C11 C 0 1 N N N N N N -8.808 -2.462 -3.211 1.372 -0.693 -3.704 C21 A1EKQ 11 A1EKQ C26 C12 C 0 1 N N N N N N -10.909 -6.781 0.717 -4.407 -2.516 -0.757 C26 A1EKQ 12 A1EKQ C01 C13 C 0 1 Y N N N N N -11.152 -9.449 -5.230 -2.625 3.215 1.094 C01 A1EKQ 13 A1EKQ C02 C14 C 0 1 Y N N N N N -11.047 -8.108 -5.907 -1.580 3.280 0.152 C02 A1EKQ 14 A1EKQ C03 C15 C 0 1 N N S N N N -11.108 -8.089 -7.443 -0.651 4.464 0.095 C03 A1EKQ 15 A1EKQ C04 C16 C 0 1 N N N N N N -10.406 -9.219 -8.072 -1.303 5.706 0.694 C04 A1EKQ 16 A1EKQ C05 C17 C 0 1 N N N N N N -11.099 -10.466 -7.694 -1.775 5.396 2.120 C05 A1EKQ 17 A1EKQ C06 C18 C 0 1 N N N N N N -11.234 -10.707 -6.175 -2.849 4.333 2.023 C06 A1EKQ 18 A1EKQ C07 C19 C 0 1 Y N N N N N -11.126 -9.582 -3.755 -3.461 2.098 1.155 C07 A1EKQ 19 A1EKQ C08 C20 C 0 1 Y N N N N N -11.010 -8.356 -2.918 -3.259 1.025 0.261 C08 A1EKQ 20 A1EKQ C09 C21 C 0 1 Y N N N N N -10.918 -7.047 -3.653 -2.225 1.130 -0.715 C09 A1EKQ 21 A1EKQ C30 C22 C 0 1 N N N N N N -12.438 -2.467 -4.123 0.112 -0.726 -0.414 C30 A1EKQ 22 A1EKQ C32 C23 C 0 1 N N N N N N -9.515 -0.992 -6.481 3.658 0.095 -1.313 C32 A1EKQ 23 A1EKQ C33 C24 C 0 1 N N S N N N -9.127 0.502 -6.318 4.216 1.208 -0.465 C33 A1EKQ 24 A1EKQ C35 C25 C 0 1 N N N N N N -10.372 1.387 -6.591 4.481 2.434 -1.341 C35 A1EKQ 25 A1EKQ C36 C26 C 0 1 N N N N N N -10.152 2.563 -7.406 5.066 3.556 -0.479 C36 A1EKQ 26 A1EKQ C37 C27 C 0 1 N N N N N N -9.411 2.231 -8.600 6.348 3.055 0.193 C37 A1EKQ 27 A1EKQ C38 C28 C 0 1 N N N N N N -8.006 1.736 -8.218 6.029 1.811 1.026 C38 A1EKQ 28 A1EKQ C40 C29 C 0 1 N N N N N N -6.784 0.889 -6.377 5.284 -0.488 0.893 C40 A1EKQ 29 A1EKQ C42 C30 C 0 1 Y N N N N N -13.184 -0.243 -5.120 -1.551 -1.925 1.040 C42 A1EKQ 30 A1EKQ C44 C31 C 0 1 Y N N N N N -13.221 -0.755 -7.259 -0.266 -2.927 2.463 C44 A1EKQ 31 A1EKQ C46 C32 C 0 1 N N N N N N -13.046 -2.048 -9.494 1.677 -3.669 3.603 C46 A1EKQ 32 A1EKQ C49 C33 C 0 1 N N N N N N -12.510 -3.179 -7.328 1.954 -2.269 1.776 C49 A1EKQ 33 A1EKQ C51 C34 C 0 1 Y N N N N N -12.830 -1.865 -6.563 0.551 -2.217 1.593 C51 A1EKQ 34 A1EKQ N31 N1 N 0 1 N N N N N N -9.858 -1.928 -5.390 2.331 0.020 -1.538 N31 A1EKQ 35 A1EKQ N39 N2 N 0 1 N N N N N N -7.966 0.730 -7.173 5.473 0.768 0.155 N39 A1EKQ 36 A1EKQ N41 N3 N 0 1 Y N N N N N -13.436 0.241 -6.370 -1.530 -2.717 2.081 N41 A1EKQ 37 A1EKQ N43 N4 N 0 1 Y N N N N N -12.799 -1.544 -5.240 -0.289 -1.592 0.697 N43 A1EKQ 38 A1EKQ N45 N5 N 0 1 N N N N N N -13.339 -0.804 -8.767 0.323 -3.657 3.476 N45 A1EKQ 39 A1EKQ N47 N6 N 0 1 N N N N N N -13.164 -2.082 -10.951 2.244 -4.399 4.614 N47 A1EKQ 40 A1EKQ N48 N7 N 0 1 N N N N N N -12.624 -3.230 -8.766 2.458 -2.999 2.782 N48 A1EKQ 41 A1EKQ O18 O1 O 0 1 N N N N N N -10.733 -4.649 -3.558 -1.156 -0.075 -2.614 O18 A1EKQ 42 A1EKQ O22 O2 O 0 1 N N N N N N -9.469 -3.185 -2.149 0.161 -1.430 -3.978 O22 A1EKQ 43 A1EKQ O23 O3 O 0 1 N N N N N N -11.308 -11.784 -5.691 -3.861 4.402 2.689 O23 A1EKQ 44 A1EKQ O24 O4 O 0 1 N N N N N N -11.217 -10.857 -3.188 -4.455 2.042 2.072 O24 A1EKQ 45 A1EKQ O25 O5 O 0 1 N N N N N N -10.716 -6.781 -7.898 -0.310 4.726 -1.268 O25 A1EKQ 46 A1EKQ O27 O6 O 0 1 N N N N N N -11.143 -5.362 0.710 -3.821 -3.103 -1.831 O27 A1EKQ 47 A1EKQ O28 O7 O 0 1 N N N N N N -10.899 -7.506 1.660 -5.246 -3.041 -0.051 O28 A1EKQ 48 A1EKQ O29 O8 O 0 1 N N N N N N -11.486 -1.178 -2.248 0.533 -2.964 -1.265 O29 A1EKQ 49 A1EKQ O34 O9 O 0 1 N N N N N N -9.538 -1.439 -7.579 4.402 -0.733 -1.794 O34 A1EKQ 50 A1EKQ O50 O10 O 0 1 N N N N N N -12.179 -4.145 -6.727 2.697 -1.654 1.026 O50 A1EKQ 51 A1EKQ H1 H1 H 0 1 N N N N N N -10.897 -5.903 -5.582 -0.591 2.321 -1.449 H1 A1EKQ 52 A1EKQ H2 H2 H 0 1 N N N N N N -11.090 -9.380 -0.958 -4.822 -0.204 1.113 H2 A1EKQ 53 A1EKQ H3 H3 H 0 1 N N N N N N -9.599 -4.651 -0.388 -3.477 -1.845 -3.479 H3 A1EKQ 54 A1EKQ H4 H4 H 0 1 N N N N N N -10.895 -2.728 -0.700 -1.272 -3.209 -1.912 H4 A1EKQ 55 A1EKQ H5 H5 H 0 1 N N N N N N -12.314 -3.685 -1.243 -1.473 -3.090 -3.669 H5 A1EKQ 56 A1EKQ H6 H6 H 0 1 N N N N N N -9.747 -0.563 -3.762 2.494 -1.938 -2.310 H6 A1EKQ 57 A1EKQ H7 H7 H 0 1 N N N N N N -8.331 -3.167 -3.907 1.180 0.380 -3.740 H7 A1EKQ 58 A1EKQ H8 H8 H 0 1 N N N N N N -8.046 -1.789 -2.791 2.151 -0.964 -4.416 H8 A1EKQ 59 A1EKQ H9 H9 H 0 1 N N N N N N -12.172 -8.206 -7.698 0.257 4.233 0.652 H9 A1EKQ 60 A1EKQ H10 H10 H 0 1 N N N N N N -9.364 -9.252 -7.720 -0.579 6.521 0.719 H10 A1EKQ 61 A1EKQ H11 H11 H 0 1 N N N N N N -10.420 -9.103 -9.166 -2.158 5.998 0.083 H11 A1EKQ 62 A1EKQ H12 H12 H 0 1 N N N N N N -12.110 -10.438 -8.126 -0.940 5.024 2.714 H12 A1EKQ 63 A1EKQ H13 H13 H 0 1 N N N N N N -10.540 -11.310 -8.124 -2.185 6.296 2.579 H13 A1EKQ 64 A1EKQ H14 H14 H 0 1 N N N N N N -13.305 -2.517 -3.447 0.987 -0.144 -0.124 H14 A1EKQ 65 A1EKQ H15 H15 H 0 1 N N N N N N -12.259 -3.459 -4.564 -0.707 -0.051 -0.663 H15 A1EKQ 66 A1EKQ H16 H16 H 0 1 N N N N N N -8.831 0.657 -5.270 3.498 1.466 0.314 H16 A1EKQ 67 A1EKQ H17 H17 H 0 1 N N N N N N -10.767 1.720 -5.620 5.188 2.173 -2.128 H17 A1EKQ 68 A1EKQ H18 H18 H 0 1 N N N N N N -11.123 0.763 -7.097 3.545 2.770 -1.789 H18 A1EKQ 69 A1EKQ H19 H19 H 0 1 N N N N N N -9.584 3.304 -6.824 5.297 4.416 -1.107 H19 A1EKQ 70 A1EKQ H20 H20 H 0 1 N N N N N N -11.125 2.990 -7.693 4.343 3.845 0.284 H20 A1EKQ 71 A1EKQ H21 H21 H 0 1 N N N N N N -9.323 3.124 -9.236 7.085 2.804 -0.569 H21 A1EKQ 72 A1EKQ H22 H22 H 0 1 N N N N N N -9.940 1.439 -9.150 6.747 3.835 0.842 H22 A1EKQ 73 A1EKQ H23 H23 H 0 1 N N N N N N -7.539 1.310 -9.118 6.942 1.444 1.494 H23 A1EKQ 74 A1EKQ H24 H24 H 0 1 N N N N N N -7.421 2.603 -7.878 5.303 2.066 1.797 H24 A1EKQ 75 A1EKQ H25 H25 H 0 1 N N N N N N -6.766 0.121 -5.589 4.506 -0.354 1.645 H25 A1EKQ 76 A1EKQ H26 H26 H 0 1 N N N N N N -5.895 0.780 -7.015 4.987 -1.275 0.200 H26 A1EKQ 77 A1EKQ H27 H27 H 0 1 N N N N N N -6.784 1.888 -5.916 6.217 -0.767 1.381 H27 A1EKQ 78 A1EKQ H28 H28 H 0 1 N N N N N N -13.274 0.309 -4.196 -2.442 -1.593 0.529 H28 A1EKQ 79 A1EKQ H29 H29 H 0 1 N N N N N N -10.087 -2.863 -5.661 1.743 0.719 -1.212 H29 A1EKQ 80 A1EKQ H31 H31 H 0 1 N N N N N N -13.618 0.013 -9.271 -0.228 -4.160 4.096 H31 A1EKQ 81 A1EKQ H32 H32 H 0 1 N N N N N N -12.953 -2.923 -11.450 1.687 -4.955 5.181 H32 A1EKQ 82 A1EKQ H33 H33 H 0 1 N N N N N N -13.455 -1.265 -11.448 3.201 -4.359 4.762 H33 A1EKQ 83 A1EKQ H34 H34 H 0 1 N N N N N N -11.272 -11.508 -3.878 -5.296 2.407 1.763 H34 A1EKQ 84 A1EKQ H35 H35 H 0 1 N N N N N N -11.221 -6.121 -7.438 0.288 5.476 -1.386 H35 A1EKQ 85 A1EKQ H36 H36 H 0 1 N N N N N N -10.699 -0.996 -1.748 1.178 -3.148 -0.568 H36 A1EKQ 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EKQ N47 C46 SING N N 1 A1EKQ C46 N45 SING N N 2 A1EKQ C46 N48 DOUB N N 3 A1EKQ N45 C44 SING N N 4 A1EKQ N48 C49 SING N N 5 A1EKQ C37 C38 SING N N 6 A1EKQ C37 C36 SING N N 7 A1EKQ C38 N39 SING N N 8 A1EKQ C04 C05 SING N N 9 A1EKQ C04 C03 SING N N 10 A1EKQ O25 C03 SING N N 11 A1EKQ C05 C06 SING N N 12 A1EKQ O34 C32 DOUB N N 13 A1EKQ C03 C02 SING N N 14 A1EKQ C36 C35 SING N N 15 A1EKQ C49 O50 DOUB N N 16 A1EKQ C49 C51 SING N N 17 A1EKQ C44 C51 DOUB Y N 18 A1EKQ C44 N41 SING Y N 19 A1EKQ N39 C40 SING N N 20 A1EKQ N39 C33 SING N N 21 A1EKQ C35 C33 SING N N 22 A1EKQ C51 N43 SING Y N 23 A1EKQ C32 C33 SING N N 24 A1EKQ C32 N31 SING N N 25 A1EKQ N41 C42 DOUB Y N 26 A1EKQ C06 O23 DOUB N N 27 A1EKQ C06 C01 SING N N 28 A1EKQ C02 C01 DOUB Y N 29 A1EKQ C02 C10 SING Y N 30 A1EKQ N31 C20 SING N N 31 A1EKQ N43 C42 SING Y N 32 A1EKQ N43 C30 SING N N 33 A1EKQ C01 C07 SING Y N 34 A1EKQ C10 C09 DOUB Y N 35 A1EKQ C30 C19 SING N N 36 A1EKQ C20 C19 SING N N 37 A1EKQ C20 C21 SING N N 38 A1EKQ C07 O24 SING N N 39 A1EKQ C07 C08 DOUB Y N 40 A1EKQ C09 C08 SING Y N 41 A1EKQ C09 C14 SING Y N 42 A1EKQ O18 C14 SING N N 43 A1EKQ O18 C17 SING N N 44 A1EKQ C19 C17 SING N N 45 A1EKQ C19 O29 SING N N 46 A1EKQ C21 O22 SING N N 47 A1EKQ C08 C11 SING Y N 48 A1EKQ C14 C13 DOUB Y N 49 A1EKQ C17 O22 SING N N 50 A1EKQ C17 C16 SING N N 51 A1EKQ C11 C12 DOUB Y N 52 A1EKQ C13 C12 SING Y N 53 A1EKQ C13 C15 SING N N 54 A1EKQ C16 C15 SING N N 55 A1EKQ C12 C26 SING N N 56 A1EKQ C15 O27 SING N N 57 A1EKQ O27 C26 SING N N 58 A1EKQ C26 O28 DOUB N N 59 A1EKQ C10 H1 SING N N 60 A1EKQ C11 H2 SING N N 61 A1EKQ C15 H3 SING N N 62 A1EKQ C16 H4 SING N N 63 A1EKQ C16 H5 SING N N 64 A1EKQ C20 H6 SING N N 65 A1EKQ C21 H7 SING N N 66 A1EKQ C21 H8 SING N N 67 A1EKQ C03 H9 SING N N 68 A1EKQ C04 H10 SING N N 69 A1EKQ C04 H11 SING N N 70 A1EKQ C05 H12 SING N N 71 A1EKQ C05 H13 SING N N 72 A1EKQ C30 H14 SING N N 73 A1EKQ C30 H15 SING N N 74 A1EKQ C33 H16 SING N N 75 A1EKQ C35 H17 SING N N 76 A1EKQ C35 H18 SING N N 77 A1EKQ C36 H19 SING N N 78 A1EKQ C36 H20 SING N N 79 A1EKQ C37 H21 SING N N 80 A1EKQ C37 H22 SING N N 81 A1EKQ C38 H23 SING N N 82 A1EKQ C38 H24 SING N N 83 A1EKQ C40 H25 SING N N 84 A1EKQ C40 H26 SING N N 85 A1EKQ C40 H27 SING N N 86 A1EKQ C42 H28 SING N N 87 A1EKQ N31 H29 SING N N 88 A1EKQ N45 H31 SING N N 89 A1EKQ N47 H32 SING N N 90 A1EKQ N47 H33 SING N N 91 A1EKQ O24 H34 SING N N 92 A1EKQ O25 H35 SING N N 93 A1EKQ O29 H36 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EKQ InChI InChI 1.06 "InChI=1S/C34H35N7O10/c1-40-7-3-2-4-18(40)29(45)37-22-11-49-34(33(22,48)12-41-13-36-28-25(41)30(46)39-32(35)38-28)10-21-24-17(31(47)50-21)8-14-15(27(24)51-34)9-16-19(42)5-6-20(43)23(16)26(14)44/h8-9,13,18-19,21-22,42,44,48H,2-7,10-12H2,1H3,(H,37,45)(H3,35,38,39,46)/t18-,19-,21+,22+,33-,34+/m0/s1" A1EKQ InChIKey InChI 1.06 ZAMAXRNPOZTYRK-LMJWNRSFSA-N A1EKQ SMILES_CANONICAL CACTVS 3.385 "CN1CCCC[C@H]1C(=O)N[C@@H]2CO[C@@]3(C[C@H]4OC(=O)c5cc6c(O)c7C(=O)CC[C@H](O)c7cc6c(O3)c45)[C@]2(O)Cn8cnc9NC(=NC(=O)c89)N" A1EKQ SMILES CACTVS 3.385 "CN1CCCC[CH]1C(=O)N[CH]2CO[C]3(C[CH]4OC(=O)c5cc6c(O)c7C(=O)CC[CH](O)c7cc6c(O3)c45)[C]2(O)Cn8cnc9NC(=NC(=O)c89)N" A1EKQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCCC[C@H]1C(=O)N[C@@H]2CO[C@]3([C@@]2(Cn4cnc5c4C(=O)N=C(N5)N)O)C[C@@H]6c7c(cc8c(c7O3)cc9c(c8O)C(=O)CC[C@@H]9O)C(=O)O6" A1EKQ SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCCCC1C(=O)NC2COC3(C2(Cn4cnc5c4C(=O)N=C(N5)N)O)CC6c7c(cc8c(c7O3)cc9c(c8O)C(=O)CCC9O)C(=O)O6" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EKQ "Create component" 2025-01-24 PDBC A1EKQ "Initial release" 2025-08-20 RCSB #