data_A1EKY # _chem_comp.id A1EKY _chem_comp.name "3-(4-phenoxyphenyl)-1-piperidin-4-yl-pyrazolo[3,4-d]pyrimidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-piperidine Ibrutinib" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-29 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EKY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9LOT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EKY C5 C1 C 0 1 Y N N N N N -10.490 7.089 -0.180 -3.044 1.213 0.232 C5 A1EKY 1 A1EKY C7 C2 C 0 1 Y N N N N N -12.525 7.638 -0.858 -3.704 3.381 0.635 C7 A1EKY 2 A1EKY C1 C3 C 0 1 N N N N N N -7.334 10.119 -1.507 -5.567 -2.685 -1.142 C1 A1EKY 3 A1EKY C11 C4 C 0 1 Y N N N N N -10.896 5.789 0.162 -1.720 1.665 0.081 C11 A1EKY 4 A1EKY C12 C5 C 0 1 Y N N N N N -9.710 5.146 0.627 -0.910 0.483 -0.214 C12 A1EKY 5 A1EKY C13 C6 C 0 1 Y N N N N N -9.461 3.732 1.006 0.553 0.459 -0.453 C13 A1EKY 6 A1EKY C14 C7 C 0 1 Y N N N N N -8.688 3.418 2.119 1.407 1.198 0.364 C14 A1EKY 7 A1EKY C15 C8 C 0 1 Y N N N N N -8.389 2.101 2.421 2.767 1.173 0.139 C15 A1EKY 8 A1EKY C16 C9 C 0 1 Y N N N N N -8.863 1.085 1.608 3.286 0.413 -0.901 C16 A1EKY 9 A1EKY C18 C10 C 0 1 Y N N N N N -7.589 -0.619 2.740 5.395 -0.374 -0.301 C18 A1EKY 10 A1EKY C19 C11 C 0 1 Y N N N N N -7.984 -1.270 3.897 6.778 -0.325 -0.401 C19 A1EKY 11 A1EKY C2 C12 C 0 1 N N N N N N -8.530 9.261 -1.137 -4.381 -1.723 -1.237 C2 A1EKY 12 A1EKY C20 C13 C 0 1 Y N N N N N -7.021 -1.701 4.793 7.557 -1.100 0.437 C20 A1EKY 13 A1EKY C21 C14 C 0 1 Y N N N N N -5.680 -1.484 4.536 6.960 -1.923 1.374 C21 A1EKY 14 A1EKY C22 C15 C 0 1 Y N N N N N -5.297 -0.834 3.382 5.582 -1.973 1.474 C22 A1EKY 15 A1EKY C23 C16 C 0 1 Y N N N N N -6.246 -0.395 2.474 4.798 -1.201 0.639 C23 A1EKY 16 A1EKY C24 C17 C 0 1 Y N N N N N -9.636 1.383 0.499 2.438 -0.324 -1.716 C24 A1EKY 17 A1EKY C25 C18 C 0 1 Y N N N N N -9.932 2.700 0.203 1.077 -0.308 -1.492 C25 A1EKY 18 A1EKY C27 C19 C 0 1 N N N N N N -7.543 8.743 1.128 -3.985 -2.066 1.203 C27 A1EKY 19 A1EKY C28 C20 C 0 1 N N N N N N -6.560 9.854 0.813 -5.182 -3.019 1.227 C28 A1EKY 20 A1EKY C3 C21 C 0 1 N N N N N N -8.116 8.172 -0.163 -4.196 -1.016 0.109 C3 A1EKY 21 A1EKY C9 C22 C 0 1 Y N N N N N -12.265 5.485 -0.061 -1.458 3.037 0.228 C9 A1EKY 22 A1EKY N10 N1 N 0 1 N N N N N N -12.820 4.307 0.254 -0.176 3.532 0.089 N10 A1EKY 23 A1EKY N26 N2 N 0 1 Y N N N N N -8.682 5.984 0.576 -1.717 -0.551 -0.226 N26 A1EKY 24 A1EKY N29 N3 N 0 1 N N N N N N -6.178 9.809 -0.623 -5.317 -3.670 -0.082 N29 A1EKY 25 A1EKY N4 N4 N 0 1 Y N N N N N -9.158 7.166 0.077 -3.026 -0.136 0.043 N4 A1EKY 26 A1EKY N6 N5 N 0 1 Y N N N N N -11.267 8.053 -0.683 -3.996 2.105 0.505 N6 A1EKY 27 A1EKY N8 N6 N 0 1 Y N N N N N -13.058 6.443 -0.584 -2.475 3.848 0.505 N8 A1EKY 28 A1EKY O17 O1 O 0 1 N N N N N N -8.567 -0.255 1.823 4.627 0.391 -1.120 O17 A1EKY 29 A1EKY H1 H1 H 0 1 N N N N N N -13.203 8.367 -1.278 -4.501 4.075 0.855 H1 A1EKY 30 A1EKY H2 H2 H 0 1 N N N N N N -7.055 9.919 -2.552 -6.473 -2.125 -0.910 H2 A1EKY 31 A1EKY H3 H3 H 0 1 N N N N N N -7.601 11.180 -1.395 -5.693 -3.201 -2.094 H3 A1EKY 32 A1EKY H4 H4 H 0 1 N N N N N N -8.318 4.210 2.754 1.004 1.790 1.173 H4 A1EKY 33 A1EKY H5 H5 H 0 1 N N N N N N -7.788 1.866 3.287 3.429 1.745 0.772 H5 A1EKY 34 A1EKY H6 H6 H 0 1 N N N N N N -9.032 -1.439 4.098 7.245 0.317 -1.132 H6 A1EKY 35 A1EKY H7 H7 H 0 1 N N N N N N -9.299 9.893 -0.669 -3.478 -2.281 -1.482 H7 A1EKY 36 A1EKY H8 H8 H 0 1 N N N N N N -8.940 8.798 -2.047 -4.574 -0.983 -2.013 H8 A1EKY 37 A1EKY H9 H9 H 0 1 N N N N N N -7.319 -2.210 5.698 8.634 -1.062 0.360 H9 A1EKY 38 A1EKY H10 H10 H 0 1 N N N N N N -4.933 -1.823 5.239 7.571 -2.528 2.027 H10 A1EKY 39 A1EKY H11 H11 H 0 1 N N N N N N -4.249 -0.666 3.185 5.117 -2.618 2.207 H11 A1EKY 40 A1EKY H12 H12 H 0 1 N N N N N N -5.945 0.115 1.571 3.722 -1.241 0.718 H12 A1EKY 41 A1EKY H13 H13 H 0 1 N N N N N N -10.006 0.589 -0.133 2.845 -0.914 -2.524 H13 A1EKY 42 A1EKY H14 H14 H 0 1 N N N N N N -10.536 2.930 -0.662 0.418 -0.882 -2.127 H14 A1EKY 43 A1EKY H15 H15 H 0 1 N N N N N N -8.362 9.145 1.743 -3.895 -1.571 2.170 H15 A1EKY 44 A1EKY H16 H16 H 0 1 N N N N N N -7.026 7.945 1.681 -3.075 -2.630 0.997 H16 A1EKY 45 A1EKY H17 H17 H 0 1 N N N N N N -5.660 9.729 1.433 -5.029 -3.776 1.996 H17 A1EKY 46 A1EKY H18 H18 H 0 1 N N N N N N -7.026 10.825 1.035 -6.090 -2.456 1.448 H18 A1EKY 47 A1EKY H19 H19 H 0 1 N N N N N N -7.283 7.642 -0.647 -5.083 -0.425 0.336 H19 A1EKY 48 A1EKY H20 H20 H 0 1 N N N N N N -13.796 4.329 0.037 0.525 2.969 -0.277 H20 A1EKY 49 A1EKY H21 H21 H 0 1 N N N N N N -12.378 3.579 -0.271 0.024 4.443 0.357 H21 A1EKY 50 A1EKY H22 H22 H 0 1 N N N N N N -5.840 8.893 -0.840 -6.041 -4.373 -0.063 H22 A1EKY 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EKY C1 C2 SING N N 1 A1EKY C1 N29 SING N N 2 A1EKY C2 C3 SING N N 3 A1EKY C7 N6 DOUB Y N 4 A1EKY C7 N8 SING Y N 5 A1EKY N6 C5 SING Y N 6 A1EKY N29 C28 SING N N 7 A1EKY N8 C9 DOUB Y N 8 A1EKY C5 N4 SING Y N 9 A1EKY C5 C11 DOUB Y N 10 A1EKY C3 N4 SING N N 11 A1EKY C3 C27 SING N N 12 A1EKY C9 C11 SING Y N 13 A1EKY C9 N10 SING N N 14 A1EKY N4 N26 SING Y N 15 A1EKY C11 C12 SING Y N 16 A1EKY C25 C24 DOUB Y N 17 A1EKY C25 C13 SING Y N 18 A1EKY C24 C16 SING Y N 19 A1EKY N26 C12 DOUB Y N 20 A1EKY C12 C13 SING N N 21 A1EKY C28 C27 SING N N 22 A1EKY C13 C14 DOUB Y N 23 A1EKY C16 O17 SING N N 24 A1EKY C16 C15 DOUB Y N 25 A1EKY O17 C18 SING N N 26 A1EKY C14 C15 SING Y N 27 A1EKY C23 C18 DOUB Y N 28 A1EKY C23 C22 SING Y N 29 A1EKY C18 C19 SING Y N 30 A1EKY C22 C21 DOUB Y N 31 A1EKY C19 C20 DOUB Y N 32 A1EKY C21 C20 SING Y N 33 A1EKY C7 H1 SING N N 34 A1EKY C1 H2 SING N N 35 A1EKY C1 H3 SING N N 36 A1EKY C14 H4 SING N N 37 A1EKY C15 H5 SING N N 38 A1EKY C19 H6 SING N N 39 A1EKY C2 H7 SING N N 40 A1EKY C2 H8 SING N N 41 A1EKY C20 H9 SING N N 42 A1EKY C21 H10 SING N N 43 A1EKY C22 H11 SING N N 44 A1EKY C23 H12 SING N N 45 A1EKY C24 H13 SING N N 46 A1EKY C25 H14 SING N N 47 A1EKY C27 H15 SING N N 48 A1EKY C27 H16 SING N N 49 A1EKY C28 H17 SING N N 50 A1EKY C28 H18 SING N N 51 A1EKY C3 H19 SING N N 52 A1EKY N10 H20 SING N N 53 A1EKY N10 H21 SING N N 54 A1EKY N29 H22 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EKY InChI InChI 1.06 "InChI=1S/C22H22N6O/c23-21-19-20(15-6-8-18(9-7-15)29-17-4-2-1-3-5-17)27-28(22(19)26-14-25-21)16-10-12-24-13-11-16/h1-9,14,16,24H,10-13H2,(H2,23,25,26)" A1EKY InChIKey InChI 1.06 LGWZZMCTBPCKHR-UHFFFAOYSA-N A1EKY SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)C5CCNCC5" A1EKY SMILES CACTVS 3.385 "Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)C5CCNCC5" A1EKY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2ccc(cc2)c3c4c(ncnc4n(n3)C5CCNCC5)N" A1EKY SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2ccc(cc2)c3c4c(ncnc4n(n3)C5CCNCC5)N" # _pdbx_chem_comp_identifier.comp_id A1EKY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-(4-phenoxyphenyl)-1-piperidin-4-yl-pyrazolo[3,4-d]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EKY "Create component" 2025-01-29 PDBC A1EKY "Initial release" 2025-05-07 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1EKY _pdbx_chem_comp_synonyms.name "N-piperidine Ibrutinib" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #