data_A1EL0 # _chem_comp.id A1EL0 _chem_comp.name "(2~{S})-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methylsulfanyl]-2-azanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 N11 O11 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-13 _chem_comp.pdbx_modified_date 2025-11-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 713.617 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EL0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9LQC _chem_comp.pdbx_subcomponent_list "SAH AMP" _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EL0 N23 N2 N 0 1 N N N N N N -0.011 -9.980 29.485 -8.225 4.750 -0.437 N SAH 1 A1EL0 C22 C8 C 0 1 N N S N N N 0.695 -8.774 29.017 -8.842 3.479 -0.034 CA SAH 2 A1EL0 C21 C7 C 0 1 N N N N N N -0.044 -7.526 29.482 -7.822 2.639 0.737 CB SAH 3 A1EL0 C20 C6 C 0 1 N N N N N N -0.154 -6.533 28.329 -6.670 2.253 -0.194 CG SAH 4 A1EL0 S19 S1 S 0 1 N N N N N N -0.987 -5.076 28.869 -5.461 1.257 0.720 SD SAH 5 A1EL0 C24 C9 C 0 1 N N N N N N 2.101 -8.775 29.547 -10.033 3.755 0.846 C SAH 6 A1EL0 O26 O5 O 0 1 N N N N N N 3.007 -7.943 29.039 -10.137 4.821 1.405 O SAH 7 A1EL0 O25 O4 O 0 1 N N N N N N 2.439 -9.539 30.439 -10.979 2.817 1.009 OXT SAH 8 A1EL0 C18 C5 C 0 1 N N N N N N -0.388 -4.594 30.459 -4.195 0.904 -0.530 "C5'" SAH 9 A1EL0 C16 C4 C 0 1 N N S N N N -1.074 -3.286 30.843 -3.084 0.056 0.094 "C4'" SAH 10 A1EL0 O17 O3 O 0 1 N N N N N N -2.472 -3.531 31.050 -3.597 -1.240 0.444 "O4'" SAH 11 A1EL0 C14 C3 C 0 1 N N S N N N -0.535 -2.686 32.129 -1.952 -0.159 -0.928 "C3'" SAH 12 A1EL0 O15 O2 O 0 1 N N N N N N -0.744 -1.284 32.039 -0.723 0.376 -0.434 "O3'" SAH 13 A1EL0 C12 C2 C 0 1 N N R N N N -1.514 -3.186 33.157 -1.855 -1.698 -1.068 "C2'" SAH 14 A1EL0 O13 O1 O 0 1 N N N N N N -1.588 -2.286 34.262 -0.491 -2.119 -1.131 "O2'" SAH 15 A1EL0 C11 C1 C 0 1 N N R N N N -2.826 -3.192 32.395 -2.525 -2.186 0.241 "C1'" SAH 16 A1EL0 N10 N1 N 0 1 Y N N N N N -3.758 -4.180 32.982 -3.057 -3.541 0.075 N9 SAH 17 A1EL0 C68 C20 C 0 1 Y N N N N N -4.924 -3.895 33.582 -4.311 -3.869 -0.348 C8 SAH 18 A1EL0 N69 N8 N 0 1 Y N N N N N -5.534 -5.024 34.014 -4.445 -5.163 -0.380 N7 SAH 19 A1EL0 C70 C21 C 0 1 Y N N N N N -4.747 -6.064 33.689 -3.289 -5.746 0.020 C5 SAH 20 A1EL0 C75 C24 C 0 1 Y N N N N N -4.789 -7.532 33.848 -2.856 -7.073 0.181 C6 SAH 21 A1EL0 N76 N11 N 0 1 N N N N N N -5.825 -8.146 34.460 -3.701 -8.133 -0.096 N6 SAH 22 A1EL0 N74 N10 N 0 1 Y N N N N N -3.755 -8.249 33.361 -1.615 -7.287 0.606 N1 SAH 23 A1EL0 C73 C23 C 0 1 Y N N N N N -2.717 -7.655 32.750 -0.800 -6.282 0.872 C2 SAH 24 A1EL0 N72 N9 N 0 1 Y N N N N N -2.612 -6.331 32.570 -1.162 -5.024 0.735 N3 SAH 25 A1EL0 C71 C22 C 0 1 Y N N N N N -3.578 -5.496 33.011 -2.383 -4.712 0.310 C4 SAH 26 A1EL0 P27 P1 P 0 1 N N N N N N 0.295 -0.193 32.614 0.094 1.540 -1.191 P AMP 27 A1EL0 O28 O6 O 0 1 N N N N N N -0.300 1.152 32.497 0.367 1.124 -2.584 O1P AMP 28 A1EL0 O29 O7 O 0 1 N N N N N N 0.673 -0.527 34.145 -0.780 2.892 -1.196 O2P AMP 29 A1EL0 O30 O8 O 0 1 N N N N N N 1.628 -0.220 31.718 1.486 1.802 -0.426 "O5'" AMP 30 A1EL0 C31 C10 C 0 1 N N N N N N 1.545 -0.160 30.299 2.483 2.704 -0.912 "C5'" AMP 31 A1EL0 C32 C11 C 0 1 N N R N N N 2.851 -0.716 29.758 3.672 2.715 0.051 "C4'" AMP 32 A1EL0 O38 O11 O 0 1 N N N N N N 2.745 -0.901 28.345 4.381 1.459 -0.011 "O4'" AMP 33 A1EL0 C33 C12 C 0 1 N N S N N N 3.984 0.273 30.001 4.708 3.775 -0.387 "C3'" AMP 34 A1EL0 O34 O9 O 0 1 N N N N N N 5.179 -0.419 30.381 4.547 4.975 0.371 "O3'" AMP 35 A1EL0 C35 C13 C 0 1 N N R N N N 4.205 0.931 28.655 6.071 3.118 -0.077 "C2'" AMP 36 A1EL0 O36 O10 O 0 1 N N N N N N 5.596 1.207 28.463 6.795 3.894 0.879 "O2'" AMP 37 A1EL0 C37 C14 C 0 1 N N R N N N 3.718 -0.111 27.661 5.698 1.739 0.511 "C1'" AMP 38 A1EL0 N39 N3 N 0 1 Y N N N N N 3.079 0.511 26.481 6.651 0.719 0.065 N9 AMP 39 A1EL0 C40 C15 C 0 1 Y N N N N N 2.276 1.589 26.485 6.530 -0.070 -1.040 C8 AMP 40 A1EL0 N41 N4 N 0 1 Y N N N N N 1.865 1.877 25.226 7.557 -0.863 -1.134 N7 AMP 41 A1EL0 C42 C16 C 0 1 Y N N N N N 2.404 0.963 24.398 8.401 -0.634 -0.099 C5 AMP 42 A1EL0 C47 C19 C 0 1 Y N N N N N 2.385 0.685 22.947 9.633 -1.172 0.309 C6 AMP 43 A1EL0 N48 N7 N 0 1 N N N N N N 1.680 1.458 22.095 10.244 -2.177 -0.421 N6 AMP 44 A1EL0 N46 N6 N 0 1 Y N N N N N 3.095 -0.372 22.502 10.198 -0.694 1.413 N1 AMP 45 A1EL0 C45 C18 C 0 1 Y N N N N N 3.804 -1.152 23.337 9.623 0.265 2.115 C2 AMP 46 A1EL0 N44 N5 N 0 1 Y N N N N N 3.867 -0.957 24.661 8.469 0.798 1.771 N3 AMP 47 A1EL0 C43 C17 C 0 1 Y N N N N N 3.201 0.065 25.237 7.832 0.388 0.679 C4 AMP 48 A1EL0 H22 H22 H 0 1 N N N N N N 0.480 -10.795 29.176 -7.918 5.274 0.369 HN1 SAH 49 A1EL0 H23 H23 H 0 1 N N N N N N -0.053 -9.975 30.484 -7.463 4.595 -1.080 HN2 SAH 50 A1EL0 H11 H11 H 0 1 N N N N N N 0.728 -8.775 27.917 -9.164 2.934 -0.922 HA SAH 51 A1EL0 H9 H9 H 0 1 N N N N N N 0.509 -7.062 30.312 -7.433 3.218 1.574 HB1 SAH 52 A1EL0 H10 H10 H 0 1 N N N N N N -1.052 -7.804 29.822 -8.304 1.736 1.112 HB2 SAH 53 A1EL0 H7 H7 H 0 1 N N N N N N -0.720 -6.992 27.505 -7.059 1.674 -1.032 HG1 SAH 54 A1EL0 H8 H8 H 0 1 N N N N N N 0.854 -6.268 27.979 -6.188 3.156 -0.569 HG2 SAH 55 A1EL0 H30 H30 H 0 1 N N N N N N 3.358 -9.406 30.639 -11.725 3.040 1.583 HXT SAH 56 A1EL0 H5 H5 H 0 1 N N N N N N -0.626 -5.372 31.199 -4.645 0.359 -1.359 "H5'1" SAH 57 A1EL0 H6 H6 H 0 1 N N N N N N 0.701 -4.447 30.419 -3.775 1.840 -0.896 "H5'2" SAH 58 A1EL0 H4 H4 H 0 1 N N N N N N -0.936 -2.561 30.027 -2.695 0.553 0.983 "H4'" SAH 59 A1EL0 H3 H3 H 0 1 N N N N N N 0.503 -2.983 32.339 -2.210 0.295 -1.885 "H3'" SAH 60 A1EL0 H2 H2 H 0 1 N N N N N N -1.252 -4.205 33.478 -2.408 -2.045 -1.941 "H2'" SAH 61 A1EL0 H29 H29 H 0 1 N N N N N N -2.210 -2.617 34.900 -0.379 -3.076 -1.219 "HO2'" SAH 62 A1EL0 H1 H1 H 0 1 N N N N N N -3.274 -2.188 32.434 -1.820 -2.151 1.072 "H1'" SAH 63 A1EL0 H20 H20 H 0 1 N N N N N N -5.322 -2.899 33.704 -5.080 -3.159 -0.617 H8 SAH 64 A1EL0 H27 H27 H 0 1 N N N N N N -5.670 -9.134 34.469 -4.605 -7.964 -0.405 HN61 SAH 65 A1EL0 H28 H28 H 0 1 N N N N N N -5.902 -7.812 35.400 -3.391 -9.044 0.020 HN62 SAH 66 A1EL0 H21 H21 H 0 1 N N N N N N -1.919 -8.282 32.381 0.200 -6.500 1.215 H2 SAH 67 A1EL0 H31 H31 H 0 1 N N N N N N 0.441 0.211 34.697 -0.997 3.223 -0.313 HOP2 AMP 68 A1EL0 H12 H12 H 0 1 N N N N N N 1.412 0.882 29.971 2.816 2.380 -1.898 "H5'1" AMP 69 A1EL0 H13 H13 H 0 1 N N N N N N 0.699 -0.767 29.943 2.062 3.707 -0.982 "H5'2" AMP 70 A1EL0 H14 H14 H 0 1 N N N N N N 3.081 -1.667 30.260 3.334 2.913 1.068 "H4'" AMP 71 A1EL0 H15 H15 H 0 1 N N N N N N 3.688 1.020 30.752 4.615 3.982 -1.453 "H3'" AMP 72 A1EL0 H32 H32 H 0 1 N N N N N N 5.050 -0.835 31.225 5.172 5.675 0.137 "HO3'" AMP 73 A1EL0 H16 H16 H 0 1 N N N N N N 3.598 1.845 28.574 6.654 2.998 -0.991 "H2'" AMP 74 A1EL0 H33 H33 H 0 1 N N N N N N 5.880 1.859 29.093 7.003 4.790 0.582 "HO2'" AMP 75 A1EL0 H17 H17 H 0 1 N N N N N N 4.567 -0.733 27.342 5.673 1.785 1.600 "H1'" AMP 76 A1EL0 H18 H18 H 0 1 N N N N N N 1.998 2.147 27.367 5.703 -0.042 -1.734 H8 AMP 77 A1EL0 H25 H25 H 0 1 N N N N N N 1.788 1.112 21.163 9.821 -2.517 -1.225 HN61 AMP 78 A1EL0 H26 H26 H 0 1 N N N N N N 0.713 1.437 22.348 11.094 -2.540 -0.128 HN62 AMP 79 A1EL0 H19 H19 H 0 1 N N N N N N 4.353 -1.982 22.917 10.116 0.624 3.006 H2 AMP 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EL0 N48 C47 SING N N 1 A1EL0 N46 C47 DOUB Y N 2 A1EL0 N46 C45 SING Y N 3 A1EL0 C47 C42 SING Y N 4 A1EL0 C45 N44 DOUB Y N 5 A1EL0 C42 N41 SING Y N 6 A1EL0 C42 C43 DOUB Y N 7 A1EL0 N44 C43 SING Y N 8 A1EL0 N41 C40 DOUB Y N 9 A1EL0 C43 N39 SING Y N 10 A1EL0 N39 C40 SING Y N 11 A1EL0 N39 C37 SING N N 12 A1EL0 C37 O38 SING N N 13 A1EL0 C37 C35 SING N N 14 A1EL0 C20 S19 SING N N 15 A1EL0 C20 C21 SING N N 16 A1EL0 O38 C32 SING N N 17 A1EL0 O36 C35 SING N N 18 A1EL0 C35 C33 SING N N 19 A1EL0 S19 C18 SING N N 20 A1EL0 C22 C21 SING N N 21 A1EL0 C22 N23 SING N N 22 A1EL0 C22 C24 SING N N 23 A1EL0 O26 C24 DOUB N N 24 A1EL0 C24 O25 SING N N 25 A1EL0 C32 C33 SING N N 26 A1EL0 C32 C31 SING N N 27 A1EL0 C33 O34 SING N N 28 A1EL0 C31 O30 SING N N 29 A1EL0 C18 C16 SING N N 30 A1EL0 C16 O17 SING N N 31 A1EL0 C16 C14 SING N N 32 A1EL0 O17 C11 SING N N 33 A1EL0 O30 P27 SING N N 34 A1EL0 O15 C14 SING N N 35 A1EL0 O15 P27 SING N N 36 A1EL0 C14 C12 SING N N 37 A1EL0 C11 N10 SING N N 38 A1EL0 C11 C12 SING N N 39 A1EL0 O28 P27 DOUB N N 40 A1EL0 N72 C73 DOUB Y N 41 A1EL0 N72 C71 SING Y N 42 A1EL0 P27 O29 SING N N 43 A1EL0 C73 N74 SING Y N 44 A1EL0 N10 C71 SING Y N 45 A1EL0 N10 C68 SING Y N 46 A1EL0 C71 C70 DOUB Y N 47 A1EL0 C12 O13 SING N N 48 A1EL0 N74 C75 DOUB Y N 49 A1EL0 C68 N69 DOUB Y N 50 A1EL0 C70 C75 SING Y N 51 A1EL0 C70 N69 SING Y N 52 A1EL0 C75 N76 SING N N 53 A1EL0 C11 H1 SING N N 54 A1EL0 C12 H2 SING N N 55 A1EL0 C14 H3 SING N N 56 A1EL0 C16 H4 SING N N 57 A1EL0 C18 H5 SING N N 58 A1EL0 C18 H6 SING N N 59 A1EL0 C20 H7 SING N N 60 A1EL0 C20 H8 SING N N 61 A1EL0 C21 H9 SING N N 62 A1EL0 C21 H10 SING N N 63 A1EL0 C22 H11 SING N N 64 A1EL0 C31 H12 SING N N 65 A1EL0 C31 H13 SING N N 66 A1EL0 C32 H14 SING N N 67 A1EL0 C33 H15 SING N N 68 A1EL0 C35 H16 SING N N 69 A1EL0 C37 H17 SING N N 70 A1EL0 C40 H18 SING N N 71 A1EL0 C45 H19 SING N N 72 A1EL0 C68 H20 SING N N 73 A1EL0 C73 H21 SING N N 74 A1EL0 N23 H22 SING N N 75 A1EL0 N23 H23 SING N N 76 A1EL0 N48 H25 SING N N 77 A1EL0 N48 H26 SING N N 78 A1EL0 N76 H27 SING N N 79 A1EL0 N76 H28 SING N N 80 A1EL0 O13 H29 SING N N 81 A1EL0 O25 H30 SING N N 82 A1EL0 O29 H31 SING N N 83 A1EL0 O34 H32 SING N N 84 A1EL0 O36 H33 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EL0 InChI InChI 1.06 "InChI=1S/C24H32N11O11PS/c25-9(24(39)40)1-2-48-4-11-17(16(38)23(45-11)35-8-33-13-19(27)29-6-31-21(13)35)46-47(41,42)43-3-10-14(36)15(37)22(44-10)34-7-32-12-18(26)28-5-30-20(12)34/h5-11,14-17,22-23,36-38H,1-4,25H2,(H,39,40)(H,41,42)(H2,26,28,30)(H2,27,29,31)/t9-,10+,11+,14+,15+,16+,17+,22+,23+/m0/s1" A1EL0 InChIKey InChI 1.06 QBCXMARFZQJLMA-XPJWLEQASA-N A1EL0 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)n5cnc6c(N)ncnc56)C(O)=O" A1EL0 SMILES CACTVS 3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)n5cnc6c(N)ncnc56)C(O)=O" A1EL0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@H](O[C@H]([C@@H]4O)n5cnc6c5ncnc6N)CSCC[C@@H](C(=O)O)N)O)O)N" A1EL0 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(OC(C4O)n5cnc6c5ncnc6N)CSCCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1EL0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-oxolan-2-yl]methylsulfanyl]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EL0 "Create component" 2025-02-13 PDBC A1EL0 "Initial release" 2025-11-26 RCSB #