data_A1ELZ # _chem_comp.id A1ELZ _chem_comp.name "[(2R,3R,4R,5R)-5-[2-azanyl-6-(methylamino)purin-9-yl]-4-fluoranyl-4-(fluoranylmethyl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H17 F2 N6 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-13 _chem_comp.pdbx_modified_date 2025-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ELZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9L09 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ELZ C10 C1 C 0 1 N N R N N N 144.095 147.528 147.428 0.083 -1.936 0.326 C10 A1ELZ 1 A1ELZ C01 C2 C 0 1 Y N N N N N 146.069 149.548 144.133 3.187 1.171 0.228 C01 A1ELZ 2 A1ELZ C02 C3 C 0 1 Y N N N N N 146.181 150.734 143.465 4.578 1.319 0.091 C02 A1ELZ 3 A1ELZ C03 C4 C 0 1 Y N N N N N 143.944 151.151 143.944 4.606 -0.540 -1.283 C03 A1ELZ 4 A1ELZ C04 C5 C 0 1 Y N N N N N 144.815 149.194 144.711 2.562 0.104 -0.438 C04 A1ELZ 5 A1ELZ C05 C6 C 0 1 N N N N N N 147.574 152.528 142.413 6.695 2.489 0.578 C05 A1ELZ 6 A1ELZ C06 C7 C 0 1 Y N N N N N 146.291 147.561 145.124 1.069 1.275 0.687 C06 A1ELZ 7 A1ELZ C07 C8 C 0 1 N N R N N N 144.124 147.297 145.941 0.169 -0.704 -0.596 C07 A1ELZ 8 A1ELZ C08 C9 C 0 1 N N R N N N 141.895 147.254 146.581 -2.089 -1.038 -0.202 C08 A1ELZ 9 A1ELZ C09 C10 C 0 1 N N R N N N 142.668 147.620 147.800 -1.371 -1.912 0.857 C09 A1ELZ 10 A1ELZ C11 C11 C 0 1 N N N N N N 144.871 148.816 147.892 1.078 -1.808 1.482 C11 A1ELZ 11 A1ELZ C12 C12 C 0 1 N N N N N N 140.603 148.000 146.517 -3.339 -0.388 0.394 C12 A1ELZ 12 A1ELZ F01 F1 F 0 1 N N N N N N 144.631 146.443 148.055 0.322 -3.109 -0.396 F01 A1ELZ 13 A1ELZ F02 F2 F 0 1 N N N N N N 144.259 149.949 147.444 0.837 -0.617 2.175 F02 A1ELZ 14 A1ELZ N01 N1 N 0 1 Y N N N N N 145.110 151.500 143.393 5.238 0.450 -0.665 N01 A1ELZ 15 A1ELZ N02 N2 N 0 1 Y N N N N N 143.776 150.002 144.610 3.300 -0.721 -1.175 N02 A1ELZ 16 A1ELZ N03 N3 N 0 1 N N N N N N 142.821 152.061 143.809 5.341 -1.421 -2.059 N03 A1ELZ 17 A1ELZ N04 N4 N 0 1 N N N N N N 147.426 151.152 142.853 5.245 2.349 0.731 N04 A1ELZ 18 A1ELZ N05 N5 N 0 1 Y N N N N N 145.107 148.056 145.243 1.228 0.194 -0.131 N05 A1ELZ 19 A1ELZ N06 N6 N 0 1 Y N N N N N 147.047 148.441 144.419 2.219 1.846 0.896 N06 A1ELZ 20 A1ELZ O01 O1 O 0 1 N N N N N N 142.769 147.608 145.450 -1.103 -0.037 -0.537 O01 A1ELZ 21 A1ELZ O02 O2 O 0 1 N N N N N N 142.376 146.691 148.855 -1.923 -3.230 0.890 O02 A1ELZ 22 A1ELZ O03 O3 O 0 1 N N N N N N 140.846 149.378 146.485 -4.045 0.316 -0.630 O03 A1ELZ 23 A1ELZ O05 O4 O 0 1 N N N N N N 138.578 150.153 145.280 -6.404 0.214 0.262 O05 A1ELZ 24 A1ELZ O12 O5 O 0 1 N N N N N N 140.613 151.710 145.415 -5.121 2.356 0.633 O12 A1ELZ 25 A1ELZ P01 P1 P 0 1 N N N N N N 140.218 150.265 145.250 -5.412 1.121 -0.358 P01 A1ELZ 26 A1ELZ H06 H1 H 0 1 N N N N N N 148.574 152.668 141.976 6.937 2.632 -0.475 H06 A1ELZ 27 A1ELZ H04 H2 H 0 1 N N N N N N 146.808 152.755 141.657 7.040 3.350 1.150 H04 A1ELZ 28 A1ELZ H05 H3 H 0 1 N N N N N N 147.452 153.203 143.273 7.188 1.588 0.944 H05 A1ELZ 29 A1ELZ H07 H4 H 0 1 N N N N N N 146.624 146.612 145.517 0.128 1.607 1.099 H07 A1ELZ 30 A1ELZ H08 H5 H 0 1 N N N N N N 144.314 146.227 145.770 0.374 -1.021 -1.619 H08 A1ELZ 31 A1ELZ H09 H6 H 0 1 N N N N N N 141.698 146.172 146.578 -2.347 -1.631 -1.079 H09 A1ELZ 32 A1ELZ H10 H7 H 0 1 N N N N N N 142.422 148.647 148.106 -1.418 -1.447 1.842 H10 A1ELZ 33 A1ELZ H12 H8 H 0 1 N N N N N N 144.905 148.838 148.991 0.957 -2.654 2.160 H12 A1ELZ 34 A1ELZ H11 H9 H 0 1 N N N N N N 145.896 148.780 147.494 2.094 -1.801 1.088 H11 A1ELZ 35 A1ELZ H15 H10 H 0 1 N N N N N N 139.998 147.757 147.403 -3.984 -1.160 0.814 H15 A1ELZ 36 A1ELZ H14 H11 H 0 1 N N N N N N 140.057 147.705 145.609 -3.048 0.309 1.180 H14 A1ELZ 37 A1ELZ H01 H12 H 0 1 N N N N N N 143.105 152.867 143.290 4.897 -2.155 -2.512 H01 A1ELZ 38 A1ELZ H02 H13 H 0 1 N N N N N N 142.075 151.601 143.328 6.300 -1.304 -2.150 H02 A1ELZ 39 A1ELZ H03 H14 H 0 1 N N N N N N 147.566 150.572 142.050 4.753 2.978 1.281 H03 A1ELZ 40 A1ELZ H13 H15 H 0 1 N N N N N N 142.870 146.927 149.631 -2.833 -3.267 1.216 H13 A1ELZ 41 A1ELZ H2 H16 H 0 1 N N N N N N 139.832 152.244 145.501 -4.479 2.992 0.290 H2 A1ELZ 42 A1ELZ O1 O6 O 0 1 N N N N N N 139.654 149.453 144.048 -5.993 1.678 -1.753 O1 A1ELZ 43 A1ELZ H1 H17 H 0 1 N N N N N N 138.707 149.415 144.107 -6.818 2.174 -1.665 H1 A1ELZ 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ELZ C05 N04 SING N N 1 A1ELZ N04 C02 SING N N 2 A1ELZ N01 C02 DOUB Y N 3 A1ELZ N01 C03 SING Y N 4 A1ELZ C02 C01 SING Y N 5 A1ELZ N03 C03 SING N N 6 A1ELZ C03 N02 DOUB Y N 7 A1ELZ C01 N06 SING Y N 8 A1ELZ C01 C04 DOUB Y N 9 A1ELZ N06 C06 DOUB Y N 10 A1ELZ N02 C04 SING Y N 11 A1ELZ C04 N05 SING Y N 12 A1ELZ C06 N05 SING Y N 13 A1ELZ N05 C07 SING N N 14 A1ELZ P01 O05 DOUB N N 15 A1ELZ P01 O12 SING N N 16 A1ELZ P01 O03 SING N N 17 A1ELZ O01 C07 SING N N 18 A1ELZ O01 C08 SING N N 19 A1ELZ C07 C10 SING N N 20 A1ELZ O03 C12 SING N N 21 A1ELZ C12 C08 SING N N 22 A1ELZ C08 C09 SING N N 23 A1ELZ C10 C09 SING N N 24 A1ELZ C10 C11 SING N N 25 A1ELZ C10 F01 SING N N 26 A1ELZ F02 C11 SING N N 27 A1ELZ C09 O02 SING N N 28 A1ELZ C05 H06 SING N N 29 A1ELZ C05 H04 SING N N 30 A1ELZ C05 H05 SING N N 31 A1ELZ C06 H07 SING N N 32 A1ELZ C07 H08 SING N N 33 A1ELZ C08 H09 SING N N 34 A1ELZ C09 H10 SING N N 35 A1ELZ C11 H12 SING N N 36 A1ELZ C11 H11 SING N N 37 A1ELZ C12 H15 SING N N 38 A1ELZ C12 H14 SING N N 39 A1ELZ N03 H01 SING N N 40 A1ELZ N03 H02 SING N N 41 A1ELZ N04 H03 SING N N 42 A1ELZ O02 H13 SING N N 43 A1ELZ O12 H2 SING N N 44 A1ELZ P01 O1 SING N N 45 A1ELZ O1 H1 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ELZ InChI InChI 1.06 "InChI=1S/C12H17F2N6O6P/c1-16-8-6-9(19-11(15)18-8)20(4-17-6)10-12(14,3-13)7(21)5(26-10)2-25-27(22,23)24/h4-5,7,10,21H,2-3H2,1H3,(H2,22,23,24)(H3,15,16,18,19)/t5-,7-,10-,12-/m1/s1" A1ELZ InChIKey InChI 1.06 NNYBMAMVSKBZGQ-GSWPYSDESA-N A1ELZ SMILES_CANONICAL CACTVS 3.385 "CNc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@]3(F)CF" A1ELZ SMILES CACTVS 3.385 "CNc1nc(N)nc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[C]3(F)CF" A1ELZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)N)n(cn2)[C@H]3[C@]([C@@H]([C@H](O3)COP(=O)(O)O)O)(CF)F" A1ELZ SMILES "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)(CF)F" # _pdbx_chem_comp_identifier.comp_id A1ELZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{R},5~{R})-5-[2-azanyl-6-(methylamino)purin-9-yl]-4-fluoranyl-4-(fluoranylmethyl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ELZ "Create component" 2025-02-13 PDBC A1ELZ "Initial release" 2025-03-19 RCSB A1ELZ "Other modification" 2025-03-17 PDBC #