data_A1EM5 # _chem_comp.id A1EM5 _chem_comp.name "~{N}4-(9-ethylcarbazol-3-yl)-~{N}2-(3-morpholin-4-ylpropyl)pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-18 _chem_comp.pdbx_modified_date 2026-06-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EM5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MAK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EM5 N1 N1 N 0 1 Y N N N N N 82.562 81.139 97.121 4.687 1.860 -0.374 N1 A1EM5 1 A1EM5 N3 N2 N 0 1 Y N N N N N 77.121 74.610 97.133 -1.200 -3.898 0.351 N3 A1EM5 2 A1EM5 C4 C1 C 0 1 Y N N N N N 81.287 83.424 97.353 3.651 3.855 0.804 C4 A1EM5 3 A1EM5 C5 C2 C 0 1 Y N N N N N 80.024 83.887 97.781 2.628 4.244 1.642 C5 A1EM5 4 A1EM5 C6 C3 C 0 1 Y N N N N N 79.095 83.012 98.226 1.718 3.315 2.122 C6 A1EM5 5 A1EM5 C7 C4 C 0 1 Y N N N N N 79.262 81.694 98.307 1.827 1.988 1.766 C7 A1EM5 6 A1EM5 C8 C5 C 0 1 Y N N N N N 80.459 81.147 97.914 2.856 1.581 0.920 C8 A1EM5 7 A1EM5 C10 C6 C 0 1 Y N N N N N 80.516 78.467 98.184 2.732 -1.011 0.475 C10 A1EM5 8 A1EM5 C13 C7 C 0 1 Y N N N N N 78.923 74.565 98.617 0.943 -4.824 0.301 C13 A1EM5 9 A1EM5 C15 C8 C 0 1 Y N N N N N 77.752 75.564 96.414 -0.683 -2.698 0.128 C15 A1EM5 10 A1EM5 C17 C9 C 0 1 N N N N N N 75.816 77.637 96.711 -3.672 -0.429 0.052 C17 A1EM5 11 A1EM5 C20 C10 C 0 1 N N N N N N 75.467 82.316 96.255 -7.914 1.974 0.358 C20 A1EM5 12 A1EM5 C21 C11 C 0 1 N N N N N N 74.967 82.052 98.605 -6.373 2.591 -1.369 C21 A1EM5 13 A1EM5 C22 C12 C 0 1 N N N N N N 75.686 80.710 98.649 -5.714 1.211 -1.290 C22 A1EM5 14 A1EM5 C24 C13 C 0 1 Y N N N N N 83.137 78.692 97.169 4.986 -0.556 -1.096 C24 A1EM5 15 A1EM5 C1 C14 C 0 1 N N N N N N 83.669 81.979 95.078 5.362 2.956 -2.454 C1 A1EM5 16 A1EM5 C11 C15 C 0 1 Y N N N N N 81.350 77.319 97.991 3.341 -2.060 -0.193 C11 A1EM5 17 A1EM5 C12 C16 C 0 1 Y N N N N N 79.551 75.525 97.898 1.459 -3.547 0.068 C12 A1EM5 18 A1EM5 C14 C17 C 0 1 Y N N N N N 77.698 74.110 98.228 -0.423 -4.967 0.441 C14 A1EM5 19 A1EM5 C16 C18 C 0 1 N N N N N N 76.442 77.457 95.267 -2.974 -1.783 0.191 C16 A1EM5 20 A1EM5 C18 C19 C 0 1 N N N N N N 76.546 78.837 97.458 -5.183 -0.615 0.210 C18 A1EM5 21 A1EM5 C19 C20 C 0 1 N N N N N N 76.216 80.940 96.368 -7.270 0.589 0.455 C19 A1EM5 22 A1EM5 C2 C21 C 0 1 N N N N N N 83.849 81.638 96.578 5.811 2.498 -1.065 C2 A1EM5 23 A1EM5 C23 C22 C 0 1 Y N N N N N 82.650 77.454 97.488 4.468 -1.827 -0.976 C23 A1EM5 24 A1EM5 C25 C23 C 0 1 Y N N N N N 82.335 79.785 97.353 4.386 0.509 -0.432 C25 A1EM5 25 A1EM5 C3 C24 C 0 1 Y N N N N N 81.518 81.991 97.421 3.778 2.520 0.433 C3 A1EM5 26 A1EM5 C9 C25 C 0 1 Y N N N N N 81.010 79.758 97.857 3.250 0.276 0.359 C9 A1EM5 27 A1EM5 N2 N3 N 0 1 N N N N N N 80.858 75.993 98.326 2.824 -3.356 -0.079 N2 A1EM5 28 A1EM5 N4 N4 N 0 1 N N N N N N 77.098 76.121 95.190 -1.528 -1.605 0.039 N4 A1EM5 29 A1EM5 N5 N5 N 0 1 N N N N N N 75.695 80.044 97.377 -5.853 0.685 0.076 N5 A1EM5 30 A1EM5 N6 N6 N 0 1 Y N N N N N 78.970 76.020 96.801 0.622 -2.518 -0.012 N6 A1EM5 31 A1EM5 O1 O1 O 0 1 N N N N N N 75.426 82.856 97.567 -7.741 2.483 -0.968 O1 A1EM5 32 A1EM5 H1 H1 H 0 1 N N N N N N 82.046 84.103 96.992 4.355 4.587 0.436 H1 A1EM5 33 A1EM5 H2 H2 H 0 1 N N N N N N 79.800 84.943 97.753 2.534 5.281 1.926 H2 A1EM5 34 A1EM5 H3 H3 H 0 1 N N N N N N 78.143 83.414 98.540 0.920 3.632 2.778 H3 A1EM5 35 A1EM5 H4 H4 H 0 1 N N N N N N 78.467 81.063 98.677 1.117 1.266 2.142 H4 A1EM5 36 A1EM5 H5 H5 H 0 1 N N N N N N 79.516 78.352 98.576 1.858 -1.191 1.083 H5 A1EM5 37 A1EM5 H6 H6 H 0 1 N N N N N N 79.393 74.159 99.500 1.598 -5.680 0.371 H6 A1EM5 38 A1EM5 H7 H7 H 0 1 N N N N N N 74.743 77.860 96.620 -3.307 0.249 0.822 H7 A1EM5 39 A1EM5 H8 H8 H 0 1 N N N N N N 75.951 76.710 97.287 -3.459 -0.010 -0.932 H8 A1EM5 40 A1EM5 H9 H9 H 0 1 N N N N N N 76.013 82.993 95.581 -8.978 1.898 0.583 H9 A1EM5 41 A1EM5 H10 H10 H 0 1 N N N N N N 74.447 82.164 95.874 -7.438 2.648 1.071 H10 A1EM5 42 A1EM5 H11 H11 H 0 1 N N N N N N 75.132 82.575 99.559 -5.852 3.282 -0.706 H11 A1EM5 43 A1EM5 H12 H12 H 0 1 N N N N N N 73.890 81.874 98.466 -6.322 2.960 -2.394 H12 A1EM5 44 A1EM5 H13 H13 H 0 1 N N N N N N 75.180 80.064 99.381 -6.200 0.534 -1.992 H13 A1EM5 45 A1EM5 H14 H14 H 0 1 N N N N N N 76.726 80.878 98.965 -4.656 1.298 -1.541 H14 A1EM5 46 A1EM5 H15 H15 H 0 1 N N N N N N 84.138 78.805 96.779 5.861 -0.386 -1.706 H15 A1EM5 47 A1EM5 H16 H16 H 0 1 N N N N N N 84.620 82.350 94.669 6.198 3.430 -2.968 H16 A1EM5 48 A1EM5 H17 H17 H 0 1 N N N N N N 83.362 81.075 94.531 5.023 2.094 -3.029 H17 A1EM5 49 A1EM5 H18 H18 H 0 1 N N N N N N 82.896 82.754 94.968 4.544 3.670 -2.355 H18 A1EM5 50 A1EM5 H19 H19 H 0 1 N N N N N N 77.196 73.347 98.804 -0.854 -5.941 0.623 H19 A1EM5 51 A1EM5 H20 H20 H 0 1 N N N N N N 77.187 78.246 95.086 -3.187 -2.202 1.175 H20 A1EM5 52 A1EM5 H21 H21 H 0 1 N N N N N N 75.648 77.523 94.509 -3.340 -2.462 -0.580 H21 A1EM5 53 A1EM5 H22 H22 H 0 1 N N N N N N 76.708 78.570 98.513 -5.548 -1.294 -0.561 H22 A1EM5 54 A1EM5 H23 H23 H 0 1 N N N N N N 77.515 79.036 96.977 -5.396 -1.034 1.194 H23 A1EM5 55 A1EM5 H24 H24 H 0 1 N N N N N N 76.149 80.434 95.394 -7.349 0.221 1.478 H24 A1EM5 56 A1EM5 H25 H25 H 0 1 N N N N N N 77.271 81.144 96.604 -7.781 -0.098 -0.220 H25 A1EM5 57 A1EM5 H26 H26 H 0 1 N N N N N N 84.621 80.862 96.689 6.149 3.360 -0.490 H26 A1EM5 58 A1EM5 H27 H27 H 0 1 N N N N N N 84.155 82.541 97.127 6.628 1.784 -1.165 H27 A1EM5 59 A1EM5 H28 H28 H 0 1 N N N N N N 83.269 76.580 97.352 4.939 -2.649 -1.495 H28 A1EM5 60 A1EM5 H29 H29 H 0 1 N N N N N N 81.437 75.384 98.868 3.421 -4.121 -0.103 H29 A1EM5 61 A1EM5 H30 H30 H 0 1 N N N N N N 76.397 75.466 94.908 -1.163 -0.721 -0.123 H30 A1EM5 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EM5 C1 C2 SING N N 1 A1EM5 N4 C16 SING N N 2 A1EM5 N4 C15 SING N N 3 A1EM5 C16 C17 SING N N 4 A1EM5 C20 C19 SING N N 5 A1EM5 C20 O1 SING N N 6 A1EM5 C19 N5 SING N N 7 A1EM5 C15 N6 DOUB Y N 8 A1EM5 C15 N3 SING Y N 9 A1EM5 C2 N1 SING N N 10 A1EM5 C17 C18 SING N N 11 A1EM5 N6 C12 SING Y N 12 A1EM5 N1 C25 SING Y N 13 A1EM5 N1 C3 SING Y N 14 A1EM5 N3 C14 DOUB Y N 15 A1EM5 C24 C25 DOUB Y N 16 A1EM5 C24 C23 SING Y N 17 A1EM5 C25 C9 SING Y N 18 A1EM5 C4 C3 DOUB Y N 19 A1EM5 C4 C5 SING Y N 20 A1EM5 N5 C18 SING N N 21 A1EM5 N5 C22 SING N N 22 A1EM5 C3 C8 SING Y N 23 A1EM5 C23 C11 DOUB Y N 24 A1EM5 O1 C21 SING N N 25 A1EM5 C5 C6 DOUB Y N 26 A1EM5 C9 C8 SING Y N 27 A1EM5 C9 C10 DOUB Y N 28 A1EM5 C12 N2 SING N N 29 A1EM5 C12 C13 DOUB Y N 30 A1EM5 C8 C7 DOUB Y N 31 A1EM5 C11 C10 SING Y N 32 A1EM5 C11 N2 SING N N 33 A1EM5 C6 C7 SING Y N 34 A1EM5 C14 C13 SING Y N 35 A1EM5 C21 C22 SING N N 36 A1EM5 C4 H1 SING N N 37 A1EM5 C5 H2 SING N N 38 A1EM5 C6 H3 SING N N 39 A1EM5 C7 H4 SING N N 40 A1EM5 C10 H5 SING N N 41 A1EM5 C13 H6 SING N N 42 A1EM5 C17 H7 SING N N 43 A1EM5 C17 H8 SING N N 44 A1EM5 C20 H9 SING N N 45 A1EM5 C20 H10 SING N N 46 A1EM5 C21 H11 SING N N 47 A1EM5 C21 H12 SING N N 48 A1EM5 C22 H13 SING N N 49 A1EM5 C22 H14 SING N N 50 A1EM5 C24 H15 SING N N 51 A1EM5 C1 H16 SING N N 52 A1EM5 C1 H17 SING N N 53 A1EM5 C1 H18 SING N N 54 A1EM5 C14 H19 SING N N 55 A1EM5 C16 H20 SING N N 56 A1EM5 C16 H21 SING N N 57 A1EM5 C18 H22 SING N N 58 A1EM5 C18 H23 SING N N 59 A1EM5 C19 H24 SING N N 60 A1EM5 C19 H25 SING N N 61 A1EM5 C2 H26 SING N N 62 A1EM5 C2 H27 SING N N 63 A1EM5 C23 H28 SING N N 64 A1EM5 N2 H29 SING N N 65 A1EM5 N4 H30 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EM5 InChI InChI 1.06 "InChI=1S/C25H30N6O/c1-2-31-22-7-4-3-6-20(22)21-18-19(8-9-23(21)31)28-24-10-12-27-25(29-24)26-11-5-13-30-14-16-32-17-15-30/h3-4,6-10,12,18H,2,5,11,13-17H2,1H3,(H2,26,27,28,29)" A1EM5 InChIKey InChI 1.06 AFTZZRFCMOAFCR-UHFFFAOYSA-N A1EM5 SMILES_CANONICAL CACTVS 3.385 "CCn1c2ccccc2c3cc(Nc4ccnc(NCCCN5CCOCC5)n4)ccc13" A1EM5 SMILES CACTVS 3.385 "CCn1c2ccccc2c3cc(Nc4ccnc(NCCCN5CCOCC5)n4)ccc13" A1EM5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCn1c2ccccc2c3c1ccc(c3)Nc4ccnc(n4)NCCCN5CCOCC5" A1EM5 SMILES "OpenEye OEToolkits" 2.0.7 "CCn1c2ccccc2c3c1ccc(c3)Nc4ccnc(n4)NCCCN5CCOCC5" # _pdbx_chem_comp_identifier.comp_id A1EM5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}4-(9-ethylcarbazol-3-yl)-~{N}2-(3-morpholin-4-ylpropyl)pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EM5 "Create component" 2025-03-18 PDBC A1EM5 "Initial release" 2026-06-24 RCSB #