data_A1EM9 # _chem_comp.id A1EM9 _chem_comp.name "[4-(4-methyl-1,4-diazepan-1-yl)phenyl]methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H21 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-18 _chem_comp.pdbx_modified_date 2026-02-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 219.326 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EM9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EM9 N1 N1 N 0 1 N N N N N N ? ? ? -3.791 0.445 -0.086 N1 A1EM9 1 A1EM9 N3 N2 N 0 1 N N N N N N ? ? ? 5.428 0.195 0.985 N3 A1EM9 2 A1EM9 C4 C1 C 0 1 N N N N N N ? ? ? -1.239 -1.602 -0.003 C4 A1EM9 3 A1EM9 C5 C2 C 0 1 N N N N N N ? ? ? -1.482 0.690 -0.843 C5 A1EM9 4 A1EM9 C6 C3 C 0 1 N N N N N N ? ? ? -2.702 1.324 -0.146 C6 A1EM9 5 A1EM9 C7 C4 C 0 1 Y N N N N N ? ? ? 0.575 -0.073 -0.020 C7 A1EM9 6 A1EM9 C8 C5 C 0 1 Y N N N N N ? ? ? 1.178 1.176 0.044 C8 A1EM9 7 A1EM9 C10 C6 C 0 1 Y N N N N N ? ? ? 3.324 0.150 -0.231 C10 A1EM9 8 A1EM9 C13 C7 C 0 1 Y N N N N N ? ? ? 1.354 -1.210 -0.190 C13 A1EM9 9 A1EM9 C1 C8 C 0 1 N N N N N N ? ? ? -4.994 1.130 0.405 C1 A1EM9 10 A1EM9 C11 C9 C 0 1 N N N N N N ? ? ? 4.821 0.273 -0.351 C11 A1EM9 11 A1EM9 C12 C10 C 0 1 Y N N N N N ? ? ? 2.727 -1.095 -0.295 C12 A1EM9 12 A1EM9 C2 C11 C 0 1 N N N N N N ? ? ? -3.529 -0.788 0.688 C2 A1EM9 13 A1EM9 C3 C12 C 0 1 N N N N N N ? ? ? -2.759 -1.746 -0.185 C3 A1EM9 14 A1EM9 C9 C13 C 0 1 Y N N N N N ? ? ? 2.550 1.285 -0.067 C9 A1EM9 15 A1EM9 N2 N3 N 0 1 N N N N N N ? ? ? -0.813 -0.187 0.092 N2 A1EM9 16 A1EM9 H2 H2 H 0 1 N N N N N N ? ? ? 5.157 -0.655 1.456 H2 A1EM9 17 A1EM9 H3 H3 H 0 1 N N N N N N ? ? ? 6.432 0.275 0.931 H3 A1EM9 18 A1EM9 H5 H5 H 0 1 N N N N N N ? ? ? -0.942 -2.122 0.907 H5 A1EM9 19 A1EM9 H6 H6 H 0 1 N N N N N N ? ? ? -0.737 -2.063 -0.853 H6 A1EM9 20 A1EM9 H7 H7 H 0 1 N N N N N N ? ? ? -1.813 0.116 -1.708 H7 A1EM9 21 A1EM9 H8 H8 H 0 1 N N N N N N ? ? ? -0.797 1.474 -1.165 H8 A1EM9 22 A1EM9 H9 H9 H 0 1 N N N N N N ? ? ? -2.999 2.218 -0.694 H9 A1EM9 23 A1EM9 H10 H10 H 0 1 N N N N N N ? ? ? -2.422 1.610 0.868 H10 A1EM9 24 A1EM9 H11 H11 H 0 1 N N N N N N ? ? ? 0.575 2.062 0.181 H11 A1EM9 25 A1EM9 H12 H12 H 0 1 N N N N N N ? ? ? 0.888 -2.183 -0.240 H12 A1EM9 26 A1EM9 H13 H13 H 0 1 N N N N N N ? ? ? -5.204 1.993 -0.226 H13 A1EM9 27 A1EM9 H14 H14 H 0 1 N N N N N N ? ? ? -5.840 0.443 0.375 H14 A1EM9 28 A1EM9 H15 H15 H 0 1 N N N N N N ? ? ? -4.831 1.460 1.431 H15 A1EM9 29 A1EM9 H16 H16 H 0 1 N N N N N N ? ? ? 5.072 1.230 -0.809 H16 A1EM9 30 A1EM9 H17 H17 H 0 1 N N N N N N ? ? ? 5.204 -0.538 -0.971 H17 A1EM9 31 A1EM9 H18 H18 H 0 1 N N N N N N ? ? ? 3.334 -1.979 -0.424 H18 A1EM9 32 A1EM9 H19 H19 H 0 1 N N N N N N ? ? ? -2.941 -0.546 1.574 H19 A1EM9 33 A1EM9 H20 H20 H 0 1 N N N N N N ? ? ? -4.474 -1.239 0.988 H20 A1EM9 34 A1EM9 H21 H21 H 0 1 N N N N N N ? ? ? -3.010 -1.556 -1.228 H21 A1EM9 35 A1EM9 H22 H22 H 0 1 N N N N N N ? ? ? -3.050 -2.766 0.067 H22 A1EM9 36 A1EM9 H23 H23 H 0 1 N N N N N N ? ? ? 3.020 2.256 -0.017 H23 A1EM9 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EM9 C11 N3 SING N N 1 A1EM9 C11 C10 SING N N 2 A1EM9 C12 C10 DOUB Y N 3 A1EM9 C12 C13 SING Y N 4 A1EM9 C10 C9 SING Y N 5 A1EM9 C13 C7 DOUB Y N 6 A1EM9 C9 C8 DOUB Y N 7 A1EM9 C7 C8 SING Y N 8 A1EM9 C7 N2 SING N N 9 A1EM9 N2 C4 SING N N 10 A1EM9 N2 C5 SING N N 11 A1EM9 C4 C3 SING N N 12 A1EM9 C5 C6 SING N N 13 A1EM9 C3 C2 SING N N 14 A1EM9 C6 N1 SING N N 15 A1EM9 C2 N1 SING N N 16 A1EM9 N1 C1 SING N N 17 A1EM9 N3 H2 SING N N 18 A1EM9 N3 H3 SING N N 19 A1EM9 C4 H5 SING N N 20 A1EM9 C4 H6 SING N N 21 A1EM9 C5 H7 SING N N 22 A1EM9 C5 H8 SING N N 23 A1EM9 C6 H9 SING N N 24 A1EM9 C6 H10 SING N N 25 A1EM9 C8 H11 SING N N 26 A1EM9 C13 H12 SING N N 27 A1EM9 C1 H13 SING N N 28 A1EM9 C1 H14 SING N N 29 A1EM9 C1 H15 SING N N 30 A1EM9 C11 H16 SING N N 31 A1EM9 C11 H17 SING N N 32 A1EM9 C12 H18 SING N N 33 A1EM9 C2 H19 SING N N 34 A1EM9 C2 H20 SING N N 35 A1EM9 C3 H21 SING N N 36 A1EM9 C3 H22 SING N N 37 A1EM9 C9 H23 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EM9 InChI InChI 1.06 "InChI=1S/C13H21N3/c1-15-7-2-8-16(10-9-15)13-5-3-12(11-14)4-6-13/h3-6H,2,7-11,14H2,1H3" A1EM9 InChIKey InChI 1.06 GYRJZJZERXFNLI-UHFFFAOYSA-N A1EM9 SMILES_CANONICAL CACTVS 3.385 "CN1CCCN(CC1)c2ccc(CN)cc2" A1EM9 SMILES CACTVS 3.385 "CN1CCCN(CC1)c2ccc(CN)cc2" A1EM9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCCN(CC1)c2ccc(cc2)CN" A1EM9 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCCN(CC1)c2ccc(cc2)CN" # _pdbx_chem_comp_identifier.comp_id A1EM9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[4-(4-methyl-1,4-diazepan-1-yl)phenyl]methanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EM9 "Create component" 2025-03-18 PDBC A1EM9 "Modify coordinates" 2026-02-11 RCSB A1EM9 "Initial release" 2026-02-18 RCSB #