data_A1EMX # _chem_comp.id A1EMX _chem_comp.name "2,4-dimethyl-3-[2-(2-methylpyrimidin-5-yl)-1~{H}-pyrrolo[2,3-b]pyridin-5-yl]phenol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-11 _chem_comp.pdbx_modified_date 2025-10-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 330.383 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EMX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9M6P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EMX N3 N1 N 0 1 Y N N N N N 45.950 -10.016 -18.488 -0.448 -1.559 -1.381 N3 A1EMX 1 A1EMX C4 C1 C 0 1 Y N N N N N 46.065 -11.330 -18.444 -1.698 -1.210 -1.171 C4 A1EMX 2 A1EMX C5 C2 C 0 1 Y N N N N N 46.226 -12.021 -17.235 -2.025 -0.133 -0.343 C5 A1EMX 3 A1EMX C6 C3 C 0 1 Y N N N N N 46.263 -11.273 -16.052 -1.002 0.584 0.273 C6 A1EMX 4 A1EMX C7 C4 C 0 1 Y N N N N N 46.121 -8.795 -15.153 1.620 0.672 0.475 C7 A1EMX 5 A1EMX C8 C5 C 0 1 Y N N N N N 45.960 -7.631 -15.836 2.552 -0.127 -0.101 C8 A1EMX 6 A1EMX C10 C6 C 0 1 Y N N N N N 45.889 -6.272 -15.237 4.014 0.002 0.078 C10 A1EMX 7 A1EMX N12 N2 N 0 1 Y N N N N N 45.754 -3.922 -15.471 5.866 1.086 1.020 N12 A1EMX 8 A1EMX C13 C7 C 0 1 Y N N N N N 45.761 -3.791 -14.156 6.663 0.235 0.403 C13 A1EMX 9 A1EMX C15 C8 C 0 1 Y N N N N N 45.891 -6.079 -13.842 4.898 -0.875 -0.562 C15 A1EMX 10 A1EMX C17 C9 C 0 1 Y N N N N N 46.357 -13.511 -17.209 -3.444 0.241 -0.123 C17 A1EMX 11 A1EMX C20 C10 C 0 1 Y N N N N N 46.611 -16.291 -17.157 -6.093 0.946 0.286 C20 A1EMX 12 A1EMX C21 C11 C 0 1 Y N N N N N 45.372 -15.711 -16.930 -5.627 -0.281 0.737 C21 A1EMX 13 A1EMX C22 C12 C 0 1 Y N N N N N 45.238 -14.322 -16.956 -4.303 -0.636 0.534 C22 A1EMX 14 A1EMX C24 C13 C 0 1 N N N N N N 43.896 -13.677 -16.707 -3.795 -1.968 1.022 C24 A1EMX 15 A1EMX C1 C14 C 0 1 Y N N N N N 46.134 -9.878 -16.135 0.315 0.188 0.029 C1 A1EMX 16 A1EMX C2 C15 C 0 1 Y N N N N N 45.975 -9.267 -17.393 0.565 -0.910 -0.820 C2 A1EMX 17 A1EMX N9 N3 N 0 1 Y N N N N N 45.875 -7.915 -17.183 1.928 -1.076 -0.879 N9 A1EMX 18 A1EMX C11 C16 C 0 1 Y N N N N N 45.818 -5.119 -16.041 4.554 1.007 0.888 C11 A1EMX 19 A1EMX N14 N4 N 0 1 Y N N N N N 45.827 -4.843 -13.356 6.197 -0.723 -0.374 N14 A1EMX 20 A1EMX C16 C17 C 0 1 N N N N N N 45.690 -2.412 -13.551 8.153 0.367 0.585 C16 A1EMX 21 A1EMX C18 C18 C 0 1 Y N N N N N 47.601 -14.121 -17.432 -3.918 1.474 -0.567 C18 A1EMX 22 A1EMX C19 C19 C 0 1 Y N N N N N 47.718 -15.500 -17.402 -5.239 1.820 -0.361 C19 A1EMX 23 A1EMX O23 O1 O 0 1 N N N N N N 44.313 -16.529 -16.690 -6.469 -1.133 1.378 O23 A1EMX 24 A1EMX C25 C20 C 0 1 N N N N N N 48.831 -13.297 -17.712 -2.990 2.429 -1.272 C25 A1EMX 25 A1EMX H1 H1 H 0 1 N N N N N N 46.034 -11.890 -19.367 -2.489 -1.768 -1.650 H1 A1EMX 26 A1EMX H2 H2 H 0 1 N N N N N N 46.388 -11.759 -15.096 -1.221 1.422 0.918 H2 A1EMX 27 A1EMX H3 H3 H 0 1 N N N N N N 46.221 -8.900 -14.083 1.806 1.504 1.138 H3 A1EMX 28 A1EMX H4 H4 H 0 1 N N N N N N 45.944 -6.926 -13.174 4.523 -1.662 -1.199 H4 A1EMX 29 A1EMX H5 H5 H 0 1 N N N N N N 46.712 -17.366 -17.142 -7.125 1.222 0.445 H5 A1EMX 30 A1EMX H6 H6 H 0 1 N N N N N N 43.364 -13.557 -17.662 -3.420 -1.863 2.040 H6 A1EMX 31 A1EMX H7 H7 H 0 1 N N N N N N 43.303 -14.314 -16.034 -4.608 -2.694 1.007 H7 A1EMX 32 A1EMX H8 H8 H 0 1 N N N N N N 44.044 -12.691 -16.243 -2.990 -2.310 0.371 H8 A1EMX 33 A1EMX H9 H9 H 0 1 N N N N N N 45.757 -7.232 -17.904 2.383 -1.761 -1.393 H9 A1EMX 34 A1EMX H10 H10 H 0 1 N N N N N N 45.816 -5.208 -17.117 3.908 1.708 1.396 H10 A1EMX 35 A1EMX H11 H11 H 0 1 N N N N N N 45.639 -1.661 -14.353 8.468 -0.231 1.440 H11 A1EMX 36 A1EMX H12 H12 H 0 1 N N N N N N 44.793 -2.335 -12.919 8.661 0.014 -0.312 H12 A1EMX 37 A1EMX H13 H13 H 0 1 N N N N N N 46.586 -2.234 -12.939 8.406 1.413 0.759 H13 A1EMX 38 A1EMX H14 H14 H 0 1 N N N N N N 48.680 -15.961 -17.571 -5.605 2.776 -0.705 H14 A1EMX 39 A1EMX H15 H15 H 0 1 N N N N N N 43.532 -16.005 -16.553 -6.930 -1.747 0.789 H15 A1EMX 40 A1EMX H16 H16 H 0 1 N N N N N N 48.927 -13.137 -18.796 -2.515 3.081 -0.539 H16 A1EMX 41 A1EMX H17 H17 H 0 1 N N N N N N 48.744 -12.325 -17.204 -2.226 1.865 -1.806 H17 A1EMX 42 A1EMX H18 H18 H 0 1 N N N N N N 49.720 -13.827 -17.340 -3.559 3.032 -1.980 H18 A1EMX 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EMX N3 C4 DOUB Y N 1 A1EMX N3 C2 SING Y N 2 A1EMX C4 C5 SING Y N 3 A1EMX C25 C18 SING N N 4 A1EMX C18 C19 DOUB Y N 5 A1EMX C18 C17 SING Y N 6 A1EMX C19 C20 SING Y N 7 A1EMX C2 N9 SING Y N 8 A1EMX C2 C1 DOUB Y N 9 A1EMX C5 C17 SING N N 10 A1EMX C5 C6 DOUB Y N 11 A1EMX C17 C22 DOUB Y N 12 A1EMX N9 C8 SING Y N 13 A1EMX C20 C21 DOUB Y N 14 A1EMX C22 C21 SING Y N 15 A1EMX C22 C24 SING N N 16 A1EMX C21 O23 SING N N 17 A1EMX C1 C6 SING Y N 18 A1EMX C1 C7 SING Y N 19 A1EMX C11 N12 DOUB Y N 20 A1EMX C11 C10 SING Y N 21 A1EMX C8 C10 SING N N 22 A1EMX C8 C7 DOUB Y N 23 A1EMX N12 C13 SING Y N 24 A1EMX C10 C15 DOUB Y N 25 A1EMX C13 C16 SING N N 26 A1EMX C13 N14 DOUB Y N 27 A1EMX C15 N14 SING Y N 28 A1EMX C4 H1 SING N N 29 A1EMX C6 H2 SING N N 30 A1EMX C7 H3 SING N N 31 A1EMX C15 H4 SING N N 32 A1EMX C20 H5 SING N N 33 A1EMX C24 H6 SING N N 34 A1EMX C24 H7 SING N N 35 A1EMX C24 H8 SING N N 36 A1EMX N9 H9 SING N N 37 A1EMX C11 H10 SING N N 38 A1EMX C16 H11 SING N N 39 A1EMX C16 H12 SING N N 40 A1EMX C16 H13 SING N N 41 A1EMX C19 H14 SING N N 42 A1EMX O23 H15 SING N N 43 A1EMX C25 H16 SING N N 44 A1EMX C25 H17 SING N N 45 A1EMX C25 H18 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EMX InChI InChI 1.06 "InChI=1S/C20H18N4O/c1-11-4-5-18(25)12(2)19(11)15-6-14-7-17(24-20(14)23-8-15)16-9-21-13(3)22-10-16/h4-10,25H,1-3H3,(H,23,24)" A1EMX InChIKey InChI 1.06 CNUXOQDACVPLIG-UHFFFAOYSA-N A1EMX SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(O)c(C)c1c2cnc3[nH]c(cc3c2)c4cnc(C)nc4" A1EMX SMILES CACTVS 3.385 "Cc1ccc(O)c(C)c1c2cnc3[nH]c(cc3c2)c4cnc(C)nc4" A1EMX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1c2cc3cc([nH]c3nc2)c4cnc(nc4)C)C)O" A1EMX SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1c2cc3cc([nH]c3nc2)c4cnc(nc4)C)C)O" # _pdbx_chem_comp_identifier.comp_id A1EMX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2,4-dimethyl-3-[2-(2-methylpyrimidin-5-yl)-1~{H}-pyrrolo[2,3-b]pyridin-5-yl]phenol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EMX "Create component" 2025-03-11 PDBC A1EMX "Initial release" 2025-11-05 RCSB #