data_A1EN1 # _chem_comp.id A1EN1 _chem_comp.name "2-azanyl-4-[6-chloranyl-4-[(1S,5R)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoranyl-2-[[(5S,7R)-3-oxidanyl-1-adamantyl]methoxy]quinazolin-7-yl]-1-benzoselenophene-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H34 Cl F N6 O2 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-24 _chem_comp.pdbx_modified_date 2026-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 692.084 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EN1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9U41 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EN1 C4 C1 C 0 1 Y N N N N N 73.816 39.808 3.645 0.902 -2.752 0.038 C4 A1EN1 1 A1EN1 C5 C2 C 0 1 Y N N N N N 73.996 39.066 4.849 -0.261 -2.017 0.376 C5 A1EN1 2 A1EN1 C6 C3 C 0 1 Y N N N N N 74.865 39.629 5.803 -0.131 -0.624 0.598 C6 A1EN1 3 A1EN1 N1 N1 N 0 1 Y N N N N N 75.491 40.809 5.531 1.082 -0.060 0.479 N1 A1EN1 4 A1EN1 N3 N2 N 0 1 Y N N N N N 74.483 40.969 3.431 2.054 -2.103 -0.049 N3 A1EN1 5 A1EN1 C2 C4 C 0 1 Y N N N N N 75.290 41.433 4.370 2.129 -0.793 0.162 C2 A1EN1 6 A1EN1 CAA C5 C 0 1 Y N N N N N 74.160 37.375 9.814 -4.484 0.870 0.371 CAA A1EN1 7 A1EN1 CAB C6 C 0 1 Y N N N N N 74.571 36.826 11.097 -5.603 1.597 0.799 CAB A1EN1 8 A1EN1 CAC C7 C 0 1 Y N N N N N 75.733 36.087 11.107 -5.935 1.746 2.116 CAC A1EN1 9 A1EN1 CAD C8 C 0 1 Y N N N N N 76.482 35.885 9.913 -5.152 1.165 3.104 CAD A1EN1 10 A1EN1 CAE C9 C 0 1 Y N N N N N 76.078 36.450 8.744 -4.038 0.438 2.735 CAE A1EN1 11 A1EN1 CAF C10 C 0 1 Y N N N N N 74.918 37.166 8.666 -3.696 0.283 1.403 CAF A1EN1 12 A1EN1 CAG C11 C 0 1 Y N N N N N 72.940 38.107 9.999 -4.237 0.778 -1.073 CAG A1EN1 13 A1EN1 CAH C12 C 0 1 Y N N N N N 72.481 38.084 11.277 -5.042 1.364 -1.995 CAH A1EN1 14 A1EN1 CAK C13 C 0 1 N N N N N N 72.224 38.809 8.942 -3.098 0.039 -1.528 CAK A1EN1 15 A1EN1 CAL C14 C 0 1 Y N N N N N 74.573 37.758 7.367 -2.493 -0.504 1.045 CAL A1EN1 16 A1EN1 CAM C15 C 0 1 Y N N N N N 75.124 39.018 7.041 -1.263 0.129 0.935 CAM A1EN1 17 A1EN1 CAP C16 C 0 1 Y N N N N N 73.374 37.870 5.236 -1.514 -2.630 0.493 CAP A1EN1 18 A1EN1 CAQ C17 C 0 1 Y N N N N N 73.584 37.295 6.489 -2.607 -1.886 0.821 CAQ A1EN1 19 A1EN1 CAZ C18 C 0 1 N N N N N N 72.470 40.421 1.488 1.232 -4.433 -1.568 CAZ A1EN1 20 A1EN1 CBA C19 C 0 1 N N R N N N 73.010 39.908 0.178 2.737 -4.167 -1.732 CBA A1EN1 21 A1EN1 CBC C20 C 0 1 N N S N N N 73.317 37.778 0.733 3.133 -4.565 0.529 CBC A1EN1 22 A1EN1 CBD C21 C 0 1 N N N N N N 72.806 37.845 2.141 1.645 -4.848 0.792 CBD A1EN1 23 A1EN1 CBE C22 C 0 1 N N N N N N 74.680 38.360 0.579 3.297 -3.035 0.364 CBE A1EN1 24 A1EN1 CBF C23 C 0 1 N N N N N N 74.475 39.688 0.246 3.035 -2.772 -1.134 CBF A1EN1 25 A1EN1 CBG C24 C 0 1 N N N N N N 76.811 44.591 3.073 4.814 1.724 0.122 CBG A1EN1 26 A1EN1 CBH C25 C 0 1 N N N N N N 76.632 45.170 1.783 4.860 3.231 0.379 CBH A1EN1 27 A1EN1 CBI C26 C 0 1 N N N N N N 77.503 46.290 1.964 6.295 3.734 0.209 CBI A1EN1 28 A1EN1 CBJ C27 C 0 1 N N N N N N 78.853 45.981 1.934 6.772 3.445 -1.216 CBJ A1EN1 29 A1EN1 CBK C28 C 0 1 N N S N N N 78.978 45.221 3.177 6.725 1.937 -1.473 CBK A1EN1 30 A1EN1 CBL C29 C 0 1 N N N N N N 78.107 44.041 3.154 5.290 1.434 -1.303 CBL A1EN1 31 A1EN1 CBM C30 C 0 1 N N N N N N 76.332 45.321 4.175 5.726 1.008 1.120 CBM A1EN1 32 A1EN1 CBN C31 C 0 1 N N R N N N 77.197 46.508 4.161 7.161 1.511 0.950 CBN A1EN1 33 A1EN1 CBO C32 C 0 1 N N N N N N 78.599 46.087 4.310 7.638 1.221 -0.475 CBO A1EN1 34 A1EN1 CBP C33 C 0 1 N N N N N N 77.071 47.254 2.904 7.207 3.018 1.207 CBP A1EN1 35 A1EN1 CBR C34 C 0 1 N N N N N N 75.908 43.432 3.004 3.379 1.221 0.291 CBR A1EN1 36 A1EN1 FAX F1 F 0 1 N N N N N N 76.093 39.508 7.825 -1.159 1.458 1.151 FAX A1EN1 37 A1EN1 NAJ N3 N 0 1 N N N N N N 71.267 38.743 11.621 -4.927 1.355 -3.357 NAJ A1EN1 38 A1EN1 NAR N4 N 0 1 N N N N N N 71.660 39.352 8.097 -2.194 -0.547 -1.888 NAR A1EN1 39 A1EN1 NAY N5 N 0 1 N N N N N N 73.010 39.368 2.543 0.837 -4.111 -0.190 NAY A1EN1 40 A1EN1 NBB N6 N 0 1 N N N N N N 72.470 38.613 -0.070 3.446 -5.108 -0.822 NBB A1EN1 41 A1EN1 OBQ O1 O 0 1 N N N N N N 76.009 42.657 4.216 3.336 -0.187 0.051 OBQ A1EN1 42 A1EN1 OBS O2 O 0 1 N N N N N N 77.319 47.007 0.704 6.338 5.142 0.449 OBS A1EN1 43 A1EN1 CLAS CL1 CL 0 0 N N N N N N 72.728 35.850 6.891 -4.157 -2.654 0.966 CLAS A1EN1 44 A1EN1 SEAI SE1 SE 0 0 Y N N N N N 73.471 37.232 12.419 -6.422 2.240 -0.878 SEAI A1EN1 45 A1EN1 HAC H1 H 0 1 N N N N N N 76.081 35.655 12.033 -6.809 2.318 2.389 HAC A1EN1 46 A1EN1 HAD H2 H 0 1 N N N N N N 77.376 35.280 9.936 -5.411 1.281 4.146 HAD A1EN1 47 A1EN1 HAE H3 H 0 1 N N N N N N 76.687 36.330 7.860 -3.424 -0.016 3.499 HAE A1EN1 48 A1EN1 HAP H4 H 0 1 N N N N N N 72.710 37.378 4.540 -1.615 -3.692 0.324 HAP A1EN1 49 A1EN1 HA0 H5 H 0 1 N N N N N N 71.370 40.442 1.480 0.673 -3.807 -2.264 HA0 A1EN1 50 A1EN1 HAZ H6 H 0 1 N N N N N N 72.854 41.429 1.705 1.022 -5.483 -1.773 HAZ A1EN1 51 A1EN1 HBA H7 H 0 1 N N N N N N 72.763 40.608 -0.634 3.065 -4.265 -2.768 HBA A1EN1 52 A1EN1 HBC H8 H 0 1 N N N N N N 73.303 36.738 0.374 3.777 -4.981 1.304 HBC A1EN1 53 A1EN1 HBE H9 H 0 1 N N N N N N 73.387 37.184 2.801 1.454 -5.917 0.693 HBE A1EN1 54 A1EN1 HBD H10 H 0 1 N N N N N N 71.743 37.566 2.186 1.384 -4.523 1.799 HBD A1EN1 55 A1EN1 HBG H11 H 0 1 N N N N N N 75.232 37.843 -0.220 2.566 -2.507 0.976 HBG A1EN1 56 A1EN1 HBF H12 H 0 1 N N N N N N 75.241 38.281 1.522 4.308 -2.730 0.633 HBF A1EN1 57 A1EN1 HBI H13 H 0 1 N N N N N N 74.933 39.906 -0.730 3.917 -2.338 -1.604 HBI A1EN1 58 A1EN1 HBH H14 H 0 1 N N N N N N 74.918 40.340 1.013 2.174 -2.114 -1.259 HBH A1EN1 59 A1EN1 HBJ H15 H 0 1 N N N N N N 76.967 44.504 0.974 4.210 3.741 -0.332 HBJ A1EN1 60 A1EN1 HBK H16 H 0 1 N N N N N N 75.591 45.474 1.600 4.521 3.437 1.394 HBK A1EN1 61 A1EN1 HBM H17 H 0 1 N N N N N N 79.111 45.370 1.056 6.121 3.954 -1.927 HBM A1EN1 62 A1EN1 HBL H18 H 0 1 N N N N N N 79.478 46.886 1.947 7.794 3.803 -1.337 HBL A1EN1 63 A1EN1 HBN H19 H 0 1 N N N N N N 80.022 44.899 3.303 7.065 1.731 -2.488 HBN A1EN1 64 A1EN1 HBO H20 H 0 1 N N N N N N 78.225 43.447 4.072 5.258 0.360 -1.487 HBO A1EN1 65 A1EN1 HBP H21 H 0 1 N N N N N N 78.322 43.410 2.279 4.640 1.944 -2.014 HBP A1EN1 66 A1EN1 HBQ H22 H 0 1 N N N N N N 75.275 45.596 4.042 5.387 1.214 2.135 HBQ A1EN1 67 A1EN1 HBR H23 H 0 1 N N N N N N 76.449 44.754 5.110 5.694 -0.066 0.936 HBR A1EN1 68 A1EN1 HBS H24 H 0 1 N N N N N N 76.925 47.164 5.001 7.812 1.001 1.661 HBS A1EN1 69 A1EN1 HBU H25 H 0 1 N N N N N N 78.716 45.530 5.252 7.605 0.147 -0.658 HBU A1EN1 70 A1EN1 HBT H26 H 0 1 N N N N N N 79.248 46.975 4.326 8.660 1.579 -0.596 HBT A1EN1 71 A1EN1 HBW H27 H 0 1 N N N N N N 77.720 48.142 2.896 8.230 3.376 1.086 HBW A1EN1 72 A1EN1 HBV H28 H 0 1 N N N N N N 76.030 47.558 2.719 6.868 3.224 2.222 HBV A1EN1 73 A1EN1 HBX H29 H 0 1 N N N N N N 76.186 42.804 2.145 3.039 1.427 1.306 HBX A1EN1 74 A1EN1 HBY H30 H 0 1 N N N N N N 74.873 43.783 2.881 2.729 1.731 -0.420 HBY A1EN1 75 A1EN1 HB3 H31 H 0 1 N N N N N N 71.093 38.632 12.599 -4.191 0.883 -3.778 HB3 A1EN1 76 A1EN1 HAJ H32 H 0 1 N N N N N N 71.343 39.716 11.404 -5.580 1.820 -3.902 HAJ A1EN1 77 A1EN1 HBB H33 H 0 1 N N N N N N 71.516 38.554 0.225 3.091 -6.047 -0.925 HBB A1EN1 78 A1EN1 H1 H35 H 0 1 N N N N N N 77.858 47.789 0.703 7.219 5.530 0.359 H1 A1EN1 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EN1 NAR CAK TRIP N N 1 A1EN1 CAK CAG SING N N 2 A1EN1 CAG CAA SING Y N 3 A1EN1 CAG CAH DOUB Y N 4 A1EN1 CAA CAB DOUB Y N 5 A1EN1 CAA CAF SING Y N 6 A1EN1 CAH NAJ SING N N 7 A1EN1 CAH SEAI SING Y N 8 A1EN1 SEAI CAB SING Y N 9 A1EN1 CAB CAC SING Y N 10 A1EN1 CAC CAD DOUB Y N 11 A1EN1 CAD CAE SING Y N 12 A1EN1 CAE CAF DOUB Y N 13 A1EN1 CAF CAL SING N N 14 A1EN1 CAL CAQ DOUB Y N 15 A1EN1 CAL CAM SING Y N 16 A1EN1 CAQ CLAS SING N N 17 A1EN1 CAQ CAP SING Y N 18 A1EN1 CAP C5 DOUB Y N 19 A1EN1 CAM FAX SING N N 20 A1EN1 CAM C6 DOUB Y N 21 A1EN1 C6 N1 SING Y N 22 A1EN1 C6 C5 SING Y N 23 A1EN1 N1 C2 DOUB Y N 24 A1EN1 C5 C4 SING Y N 25 A1EN1 C4 NAY SING N N 26 A1EN1 C4 N3 DOUB Y N 27 A1EN1 NAY CAZ SING N N 28 A1EN1 NAY CBD SING N N 29 A1EN1 CAZ CBA SING N N 30 A1EN1 CBA NBB SING N N 31 A1EN1 CBA CBF SING N N 32 A1EN1 NBB CBC SING N N 33 A1EN1 CBF CBE SING N N 34 A1EN1 CBE CBC SING N N 35 A1EN1 CBC CBD SING N N 36 A1EN1 N3 C2 SING Y N 37 A1EN1 C2 OBQ SING N N 38 A1EN1 OBQ CBR SING N N 39 A1EN1 CBR CBG SING N N 40 A1EN1 CBG CBL SING N N 41 A1EN1 CBG CBH SING N N 42 A1EN1 CBG CBM SING N N 43 A1EN1 CBL CBK SING N N 44 A1EN1 CBH CBI SING N N 45 A1EN1 CBI OBS SING N N 46 A1EN1 CBI CBP SING N N 47 A1EN1 CBI CBJ SING N N 48 A1EN1 CBP CBN SING N N 49 A1EN1 CBJ CBK SING N N 50 A1EN1 CBK CBO SING N N 51 A1EN1 CBO CBN SING N N 52 A1EN1 CBN CBM SING N N 53 A1EN1 CAC HAC SING N N 54 A1EN1 CAD HAD SING N N 55 A1EN1 CAE HAE SING N N 56 A1EN1 CAP HAP SING N N 57 A1EN1 CAZ HA0 SING N N 58 A1EN1 CAZ HAZ SING N N 59 A1EN1 CBA HBA SING N N 60 A1EN1 CBC HBC SING N N 61 A1EN1 CBD HBE SING N N 62 A1EN1 CBD HBD SING N N 63 A1EN1 CBE HBG SING N N 64 A1EN1 CBE HBF SING N N 65 A1EN1 CBF HBI SING N N 66 A1EN1 CBF HBH SING N N 67 A1EN1 CBH HBJ SING N N 68 A1EN1 CBH HBK SING N N 69 A1EN1 CBJ HBM SING N N 70 A1EN1 CBJ HBL SING N N 71 A1EN1 CBK HBN SING N N 72 A1EN1 CBL HBO SING N N 73 A1EN1 CBL HBP SING N N 74 A1EN1 CBM HBQ SING N N 75 A1EN1 CBM HBR SING N N 76 A1EN1 CBN HBS SING N N 77 A1EN1 CBO HBU SING N N 78 A1EN1 CBO HBT SING N N 79 A1EN1 CBP HBW SING N N 80 A1EN1 CBP HBV SING N N 81 A1EN1 CBR HBX SING N N 82 A1EN1 CBR HBY SING N N 83 A1EN1 NAJ HB3 SING N N 84 A1EN1 NAJ HAJ SING N N 85 A1EN1 NBB HBB SING N N 86 A1EN1 OBS H1 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EN1 InChI InChI 1.06 "InChI=1S/C34H34ClFN6O2Se/c35-24-7-22-29(28(36)27(24)21-2-1-3-25-26(21)23(12-37)30(38)45-25)40-32(41-31(22)42-13-19-4-5-20(14-42)39-19)44-16-33-8-17-6-18(9-33)11-34(43,10-17)15-33/h1-3,7,17-20,39,43H,4-6,8-11,13-16,38H2/t17-,18+,19-,20+,33+,34-" A1EN1 InChIKey InChI 1.06 MHRKBIZRFCHSLF-JFSCTVAGSA-N A1EN1 SMILES_CANONICAL CACTVS 3.385 "Nc1[se]c2cccc(c3c(Cl)cc4c(nc(OCC56C[C@@H]7C[C@@H](CC(O)(C7)C5)C6)nc4c3F)N8C[C@@H]9CC[C@H](C8)N9)c2c1C#N" A1EN1 SMILES CACTVS 3.385 "Nc1[se]c2cccc(c3c(Cl)cc4c(nc(OCC56C[CH]7C[CH](CC(O)(C7)C5)C6)nc4c3F)N8C[CH]9CC[CH](C8)N9)c2c1C#N" A1EN1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)[se]c(c2C#N)N)c3c(cc4c(c3F)nc(nc4N5C[C@H]6CC[C@@H](C5)N6)OCC78C[C@H]9C[C@@H](C7)CC(C9)(C8)O)Cl" A1EN1 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)[se]c(c2C#N)N)c3c(cc4c(c3F)nc(nc4N5CC6CCC(C5)N6)OCC78CC9CC(C7)CC(C9)(C8)O)Cl" # _pdbx_chem_comp_identifier.comp_id A1EN1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-4-[6-chloranyl-4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoranyl-2-[[(5~{S},7~{R})-3-oxidanyl-1-adamantyl]methoxy]quinazolin-7-yl]-1-benzoselenophene-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EN1 "Create component" 2025-03-24 PDBC A1EN1 "Initial release" 2026-09-23 RCSB #