data_A1EOQ # _chem_comp.id A1EOQ _chem_comp.name Kinsenoside _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(4R)-4-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxolan-2-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-04 _chem_comp.pdbx_modified_date 2026-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EOQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9M82 _chem_comp.pdbx_subcomponent_list "BGC A1EOP" _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EOQ C2 C1 C 0 1 N N R N N N 14.097 -9.178 32.036 -1.152 -1.611 0.192 C2 BGC 1 A1EOQ C3 C5 C 0 1 N N S N N N 12.843 -9.774 32.514 -2.609 -1.248 -0.112 C3 BGC 2 A1EOQ C4 C6 C 0 1 N N S N N N 12.215 -8.958 33.592 -2.889 0.167 0.402 C4 BGC 3 A1EOQ C5 C7 C 0 1 N N R N N N 12.285 -7.430 33.433 -1.900 1.141 -0.243 C5 BGC 4 A1EOQ C6 C3 C 0 1 N N N N N N 12.001 -6.815 34.777 -2.135 2.548 0.312 C6 BGC 5 A1EOQ C1 C2 C 0 1 N N R N N N 13.900 -7.691 31.681 -0.230 -0.568 -0.445 C1 BGC 6 A1EOQ O2 O4 O 0 1 N N N N N N 14.641 -9.949 30.941 -0.859 -2.902 -0.347 O2 BGC 7 A1EOQ O3 O3 O 0 1 N N N N N N 13.095 -11.129 33.037 -3.478 -2.175 0.540 O3 BGC 8 A1EOQ O4 O5 O 0 1 N N N N N N 10.825 -9.334 33.630 -4.224 0.544 0.059 O4 BGC 9 A1EOQ O5 O1 O 0 1 N N N N N N 13.593 -6.974 32.933 -0.565 0.729 0.054 O5 BGC 10 A1EOQ O6 O7 O 0 1 N N N N N N 13.036 -7.069 35.692 -1.293 3.477 -0.374 O6 BGC 11 A1EOQ C17 C4 C 0 1 N N N N N N 15.800 -6.545 28.906 2.407 1.201 0.130 C17 A1EOP 12 A1EOQ C14 C8 C 0 1 N N R N N N 14.548 -6.966 29.711 2.082 -0.018 -0.758 C14 A1EOP 13 A1EOQ C16 C9 C 0 1 N N N N N N 14.016 -8.099 28.902 3.447 -0.730 -0.888 C16 A1EOP 14 A1EOQ C18 C10 C 0 1 N N N N N N 15.210 -8.650 28.283 4.272 -0.123 0.232 C18 A1EOP 15 A1EOQ O1 O2 O 0 1 N Y N N N N 14.999 -7.270 31.001 1.128 -0.869 -0.118 O1 A1EOP 16 A1EOQ O06 O6 O 0 1 N N N N N N 16.249 -7.609 28.379 3.834 1.136 0.410 O06 A1EOP 17 A1EOQ O08 O8 O 0 1 N N N N N N 15.403 -9.718 27.804 5.157 -0.669 0.848 O08 A1EOP 18 A1EOQ H2 H1 H 0 1 N N N N N N 14.819 -9.213 32.865 -0.997 -1.623 1.271 H2 BGC 19 A1EOQ H3 H7 H 0 1 N N N N N N 12.139 -9.844 31.672 -2.776 -1.286 -1.189 H3 BGC 20 A1EOQ H4 H8 H 0 1 N N N N N N 12.687 -9.221 34.550 -2.771 0.190 1.486 H4 BGC 21 A1EOQ H5 H9 H 0 1 N N N N N N 11.500 -7.119 32.728 -2.048 1.147 -1.323 H5 BGC 22 A1EOQ H61 H3 H 0 1 N N N N N N 11.891 -5.727 34.656 -3.178 2.827 0.165 H61 BGC 23 A1EOQ H62 H4 H 0 1 N N N N N N 11.065 -7.236 35.172 -1.901 2.562 1.376 H62 BGC 24 A1EOQ H1 H2 H 0 1 N N N N N N 13.017 -7.627 31.028 -0.356 -0.585 -1.528 H1 BGC 25 A1EOQ HO2 H14 H 0 1 N Y N N N N 14.743 -10.854 31.210 0.049 -3.196 -0.191 HO2 BGC 26 A1EOQ HO3 H13 H 0 1 N Y N N N N 12.279 -11.507 33.344 -3.351 -3.094 0.266 HO3 BGC 27 A1EOQ HO4 H15 H 0 1 N Y N N N N 10.380 -8.837 34.307 -4.904 -0.034 0.431 HO4 BGC 28 A1EOQ HO6 H16 H 0 1 N Y N N N N 12.826 -6.668 36.527 -1.389 4.391 -0.073 HO6 BGC 29 A1EOQ H172 H5 H 0 0 N N N N N N 16.553 -6.102 29.574 2.171 2.123 -0.402 H172 A1EOP 30 A1EOQ H171 H6 H 0 0 N N N N N N 15.527 -5.818 28.127 1.839 1.150 1.059 H171 A1EOP 31 A1EOQ H141 H10 H 0 0 N N N N N N 13.826 -6.137 29.722 1.717 0.302 -1.734 H141 A1EOP 32 A1EOQ H162 H11 H 0 0 N N N N N N 13.306 -7.742 28.142 3.335 -1.805 -0.743 H162 A1EOP 33 A1EOQ H161 H12 H 0 0 N N N N N N 13.523 -8.845 29.543 3.899 -0.520 -1.857 H161 A1EOP 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EOQ O08 C18 DOUB N N 1 A1EOQ C18 O06 SING N N 2 A1EOQ C18 C16 SING N N 3 A1EOQ O06 C17 SING N N 4 A1EOQ C16 C14 SING N N 5 A1EOQ C17 C14 SING N N 6 A1EOQ C14 O1 SING N N 7 A1EOQ O2 C2 SING N N 8 A1EOQ O1 C1 SING N N 9 A1EOQ C1 C2 SING N N 10 A1EOQ C1 O5 SING N N 11 A1EOQ C2 C3 SING N N 12 A1EOQ C3 O3 SING N N 13 A1EOQ C3 C4 SING N N 14 A1EOQ O5 C5 SING N N 15 A1EOQ C5 C4 SING N N 16 A1EOQ C5 C6 SING N N 17 A1EOQ C4 O4 SING N N 18 A1EOQ C6 O6 SING N N 19 A1EOQ C2 H2 SING N N 20 A1EOQ C1 H1 SING N N 21 A1EOQ C6 H61 SING N N 22 A1EOQ C6 H62 SING N N 23 A1EOQ C17 H172 SING N N 24 A1EOQ C17 H171 SING N N 25 A1EOQ C3 H3 SING N N 26 A1EOQ C4 H4 SING N N 27 A1EOQ C5 H5 SING N N 28 A1EOQ C14 H141 SING N N 29 A1EOQ C16 H162 SING N N 30 A1EOQ C16 H161 SING N N 31 A1EOQ O3 HO3 SING N N 32 A1EOQ O2 HO2 SING N N 33 A1EOQ O4 HO4 SING N N 34 A1EOQ O6 HO6 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EOQ InChI InChI 1.06 "InChI=1S/C10H16O8/c11-2-5-7(13)8(14)9(15)10(18-5)17-4-1-6(12)16-3-4/h4-5,7-11,13-15H,1-3H2/t4-,5-,7-,8+,9-,10-/m1/s1" A1EOQ InChIKey InChI 1.06 MQEPWBMWFIVRPS-ZGSHZZHUSA-N A1EOQ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O[C@H]2COC(=O)C2)[C@H](O)[C@@H](O)[C@@H]1O" A1EOQ SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2COC(=O)C2)[CH](O)[CH](O)[CH]1O" A1EOQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H](COC1=O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" A1EOQ SMILES "OpenEye OEToolkits" 2.0.7 "C1C(COC1=O)OC2C(C(C(C(O2)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1EOQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R})-4-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyoxolan-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EOQ "Create component" 2025-04-04 PDBC A1EOQ "Modify internal type" 2025-09-17 PDBC A1EOQ "Initial release" 2026-03-18 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1EOQ _pdbx_chem_comp_synonyms.name "(4R)-4-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxolan-2-one" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #