data_A1EOR # _chem_comp.id A1EOR _chem_comp.name "(2~{R},4~{S})-2-[(1~{R})-1-[[(2~{R})-2-azanyl-2-(4-hydroxyphenyl)ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H21 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Amoxicilloic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-04 _chem_comp.pdbx_modified_date 2025-07-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EOR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9U9C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EOR C4 C1 C 0 1 N N R N N N -18.276 18.399 -25.133 -0.663 1.668 -0.129 C4 A1EOR 1 A1EOR N3 N1 N 0 1 N N N N N N -19.660 18.051 -25.393 0.610 1.366 0.530 N3 A1EOR 2 A1EOR C2 C2 C 0 1 N N N N N N -20.368 17.180 -24.683 1.763 1.846 0.021 C2 A1EOR 3 A1EOR N6 N2 N 0 1 N N N N N N -15.890 17.937 -25.709 -1.249 -0.745 -0.318 N6 A1EOR 4 A1EOR C5 C3 C 0 1 N N R N N N -17.243 17.417 -25.706 -1.683 0.579 0.209 C5 A1EOR 5 A1EOR C8 C4 C 0 1 N N N N N N -14.030 18.673 -27.156 -2.526 -2.404 0.891 C8 A1EOR 6 A1EOR C11 C5 C 0 1 N N N N N N -15.928 17.147 -28.004 -3.712 -0.951 -0.729 C11 A1EOR 7 A1EOR C12 C6 C 0 1 N N N N N N -15.115 15.861 -27.812 -4.751 -1.243 0.355 C12 A1EOR 8 A1EOR C13 C7 C 0 1 N N N N N N -15.972 17.549 -29.476 -4.240 -1.366 -2.104 C13 A1EOR 9 A1EOR C15 C8 C 0 1 N N N N N N -18.105 19.850 -25.619 -1.174 3.002 0.353 C15 A1EOR 10 A1EOR C18 C9 C 0 1 N N R N N N -21.830 17.026 -25.136 3.072 1.535 0.699 C18 A1EOR 11 A1EOR C20 C10 C 0 1 Y N N N N N -22.024 16.070 -26.303 3.522 0.150 0.312 C20 A1EOR 12 A1EOR C21 C11 C 0 1 Y N N N N N -23.202 16.115 -27.040 3.314 -0.910 1.175 C21 A1EOR 13 A1EOR C22 C12 C 0 1 Y N N N N N -23.418 15.249 -28.098 3.726 -2.180 0.823 C22 A1EOR 14 A1EOR C23 C13 C 0 1 Y N N N N N -22.449 14.315 -28.434 4.348 -2.393 -0.399 C23 A1EOR 15 A1EOR C25 C14 C 0 1 Y N N N N N -21.269 14.258 -27.706 4.555 -1.328 -1.264 C25 A1EOR 16 A1EOR C26 C15 C 0 1 Y N N N N N -21.066 15.131 -26.651 4.137 -0.060 -0.909 C26 A1EOR 17 A1EOR C7 C16 C 0 1 N N S N N N -15.508 18.263 -27.079 -2.384 -1.668 -0.416 C7 A1EOR 18 A1EOR N19 N3 N 0 1 N N N N N N -22.563 16.651 -24.179 4.085 2.514 0.280 N19 A1EOR 19 A1EOR O1 O1 O 0 1 N N N N N N -19.985 16.734 -23.605 1.745 2.528 -0.982 O1 A1EOR 20 A1EOR O10 O2 O 0 1 N N N N N N -13.663 19.325 -28.155 -2.007 -1.967 1.891 O10 A1EOR 21 A1EOR O16 O3 O 0 1 N N N N N N -19.093 20.377 -26.187 -2.003 3.721 -0.419 O16 A1EOR 22 A1EOR O17 O4 O 0 1 N N N N N N -17.065 20.448 -25.339 -0.836 3.423 1.434 O17 A1EOR 23 A1EOR O24 O5 O 0 1 N N N N N N -22.643 13.455 -29.478 4.753 -3.642 -0.748 O24 A1EOR 24 A1EOR O9 O6 O 0 1 N N N N N N -13.314 18.362 -26.173 -3.230 -3.546 0.946 O9 A1EOR 25 A1EOR S14 S1 S 0 1 N N N N N N -17.654 16.886 -27.408 -3.252 0.827 -0.722 S14 A1EOR 26 A1EOR H4 H1 H 0 1 N N N N N N -18.132 18.411 -24.043 -0.514 1.704 -1.208 H4 A1EOR 27 A1EOR H3 H2 H 0 1 N N N N N N -20.114 18.500 -26.163 0.624 0.821 1.332 H3 A1EOR 28 A1EOR H6 H3 H 0 1 N N N N N N -15.846 18.761 -25.144 -0.786 -0.646 -1.209 H6 A1EOR 29 A1EOR H5 H5 H 0 1 N N N N N N -17.276 16.497 -25.103 -1.865 0.534 1.283 H5 A1EOR 30 A1EOR H12A H6 H 0 0 N N N N N N -15.472 15.093 -28.514 -4.963 -2.312 0.377 H12A A1EOR 31 A1EOR H12C H7 H 0 0 N N N N N N -14.052 16.068 -28.004 -4.362 -0.930 1.324 H12C A1EOR 32 A1EOR H12B H8 H 0 0 N N N N N N -15.238 15.500 -26.780 -5.667 -0.696 0.137 H12B A1EOR 33 A1EOR H13A H9 H 0 0 N N N N N N -16.285 16.687 -30.083 -5.156 -0.818 -2.322 H13A A1EOR 34 A1EOR H13B H10 H 0 0 N N N N N N -16.690 18.371 -29.610 -3.492 -1.139 -2.864 H13B A1EOR 35 A1EOR H13C H11 H 0 0 N N N N N N -14.973 17.879 -29.796 -4.447 -2.436 -2.106 H13C A1EOR 36 A1EOR H18 H12 H 0 1 N N N N N N -22.150 18.018 -25.488 2.943 1.587 1.780 H18 A1EOR 37 A1EOR H21 H13 H 0 1 N N N N N N -23.962 16.838 -26.783 2.830 -0.743 2.126 H21 A1EOR 38 A1EOR H22 H14 H 0 1 N N N N N N -24.339 15.300 -28.660 3.563 -3.008 1.498 H22 A1EOR 39 A1EOR H25 H15 H 0 1 N N N N N N -20.510 13.534 -27.962 5.039 -1.491 -2.215 H25 A1EOR 40 A1EOR H26 H16 H 0 1 N N N N N N -20.145 15.079 -26.089 4.298 0.769 -1.582 H26 A1EOR 41 A1EOR H7 H17 H 0 1 N N N N N N -16.089 19.149 -27.374 -2.182 -2.391 -1.206 H7 A1EOR 42 A1EOR H19B H18 H 0 0 N N N N N N -23.506 16.558 -24.498 4.955 2.366 0.769 H19B A1EOR 43 A1EOR H9 H19 H 0 1 N N N N N N -22.239 15.769 -23.837 4.223 2.486 -0.720 H9 A1EOR 44 A1EOR H8 H21 H 0 1 N N N N N N -18.908 21.293 -26.360 -2.305 4.570 -0.068 H8 A1EOR 45 A1EOR H24 H22 H 0 1 N N N N N N -21.886 12.888 -29.567 4.085 -4.155 -1.223 H24 A1EOR 46 A1EOR H2 H23 H 0 1 N N N N N N -12.436 18.701 -26.301 -3.293 -3.982 1.806 H2 A1EOR 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EOR O1 C2 DOUB N N 1 A1EOR C2 N3 SING N N 2 A1EOR N3 C4 SING N N 3 A1EOR C4 C5 SING N N 4 A1EOR C5 N6 SING N N 5 A1EOR N6 C7 SING N N 6 A1EOR C7 C8 SING N N 7 A1EOR C8 O9 SING N N 8 A1EOR C8 O10 DOUB N N 9 A1EOR C7 C11 SING N N 10 A1EOR C11 C12 SING N N 11 A1EOR C11 C13 SING N N 12 A1EOR C11 S14 SING N N 13 A1EOR C4 C15 SING N N 14 A1EOR C15 O16 SING N N 15 A1EOR C15 O17 DOUB N N 16 A1EOR C2 C18 SING N N 17 A1EOR C18 N19 SING N N 18 A1EOR C18 C20 SING N N 19 A1EOR C20 C21 DOUB Y N 20 A1EOR C21 C22 SING Y N 21 A1EOR C22 C23 DOUB Y N 22 A1EOR C23 O24 SING N N 23 A1EOR C23 C25 SING Y N 24 A1EOR C25 C26 DOUB Y N 25 A1EOR S14 C5 SING N N 26 A1EOR C26 C20 SING Y N 27 A1EOR C4 H4 SING N N 28 A1EOR N3 H3 SING N N 29 A1EOR N6 H6 SING N N 30 A1EOR C5 H5 SING N N 31 A1EOR C12 H12A SING N N 32 A1EOR C12 H12C SING N N 33 A1EOR C12 H12B SING N N 34 A1EOR C13 H13A SING N N 35 A1EOR C13 H13B SING N N 36 A1EOR C13 H13C SING N N 37 A1EOR C18 H18 SING N N 38 A1EOR C21 H21 SING N N 39 A1EOR C22 H22 SING N N 40 A1EOR C25 H25 SING N N 41 A1EOR C26 H26 SING N N 42 A1EOR C7 H7 SING N N 43 A1EOR N19 H19B SING N N 44 A1EOR N19 H9 SING N N 45 A1EOR O16 H8 SING N N 46 A1EOR O24 H24 SING N N 47 A1EOR O9 H2 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EOR InChI InChI 1.06 "InChI=1S/C16H21N3O6S/c1-16(2)11(15(24)25)19-13(26-16)10(14(22)23)18-12(21)9(17)7-3-5-8(20)6-4-7/h3-6,9-11,13,19-20H,17H2,1-2H3,(H,18,21)(H,22,23)(H,24,25)/t9-,10+,11+,13-/m1/s1" A1EOR InChIKey InChI 1.06 LHHKJQFIKHAUIA-MPPDQPJWSA-N A1EOR SMILES_CANONICAL CACTVS 3.385 "CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC(=O)[C@H](N)c2ccc(O)cc2)C(O)=O" A1EOR SMILES CACTVS 3.385 "CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC(=O)[CH](N)c2ccc(O)cc2)C(O)=O" A1EOR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H](N[C@H](S1)[C@@H](C(=O)O)NC(=O)[C@@H](c2ccc(cc2)O)N)C(=O)O)C" A1EOR SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(NC(S1)C(C(=O)O)NC(=O)C(c2ccc(cc2)O)N)C(=O)O)C" # _pdbx_chem_comp_identifier.comp_id A1EOR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-2-[(1~{R})-1-[[(2~{R})-2-azanyl-2-(4-hydroxyphenyl)ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1EOR _pdbx_chem_comp_synonyms.name "Amoxicilloic acid" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EOR "Create component" 2025-04-04 PDBC A1EOR "Initial release" 2025-07-09 RCSB #