data_A1EP2 # _chem_comp.id A1EP2 _chem_comp.name "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (1~{Z})-5-methylsulfanyl-~{N}-sulfooxy-pentanimidothioate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H23 N O9 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-Methylthiobutyl glucosinolate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-01 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.507 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EP2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UIF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EP2 C4 C1 C 0 1 N N N N N N 133.198 133.792 136.309 -1.717 2.789 0.404 C4 A1EP2 1 A1EP2 C5 C2 C 0 1 N N N N N N 132.206 133.835 135.161 -1.871 1.275 0.250 C5 A1EP2 2 A1EP2 C6 C3 C 0 1 N N N N N N 132.288 135.145 134.404 -0.488 0.620 0.240 C6 A1EP2 3 A1EP2 C7 C4 C 0 1 N N N N N N 132.276 134.959 132.918 -0.641 -0.872 0.088 C7 A1EP2 4 A1EP2 C15 C5 C 0 1 N N S N N N 135.290 134.961 133.008 2.077 -0.666 0.334 C15 A1EP2 5 A1EP2 C17 C6 C 0 1 N N S N N N 137.744 134.835 132.857 4.478 -0.321 0.921 C17 A1EP2 6 A1EP2 C21 C7 C 0 1 N N N N N N 136.423 138.383 133.585 3.405 1.868 -2.058 C21 A1EP2 7 A1EP2 C1 C8 C 0 1 N N N N N N 134.279 131.206 136.989 -4.633 5.828 0.587 C1 A1EP2 8 A1EP2 S2 S1 S 0 1 N N N N N N 133.642 132.077 138.417 -2.917 5.240 0.596 S2 A1EP2 9 A1EP2 C3 C9 C 0 1 N N N N N N 132.610 133.322 137.622 -3.099 3.444 0.414 C3 A1EP2 10 A1EP2 N8 N1 N 0 1 N N N N N N 131.233 135.215 132.216 -1.819 -1.395 -0.009 N8 A1EP2 11 A1EP2 O9 O1 O 0 1 N N N N N N 131.358 134.783 130.819 -1.959 -2.781 -0.261 O9 A1EP2 12 A1EP2 S10 S2 S 0 1 N N N N N N 130.830 135.930 129.798 -3.399 -3.273 -0.230 S10 A1EP2 13 A1EP2 O11 O2 O 0 1 N N N N N N 131.805 136.892 129.848 -4.035 -2.588 0.840 O11 A1EP2 14 A1EP2 O12 O3 O 0 1 N N N N N N 129.563 136.112 130.186 -4.068 -2.789 -1.509 O12 A1EP2 15 A1EP2 O13 O4 O 0 1 N N N N N N 130.825 135.262 128.505 -3.341 -4.690 -0.320 O13 A1EP2 16 A1EP2 S14 S3 S 0 1 N N N N N N 133.760 134.377 132.236 0.788 -1.903 0.043 S14 A1EP2 17 A1EP2 C16 C10 C 0 1 N N R N N N 136.455 134.370 132.225 3.377 -1.369 0.735 C16 A1EP2 18 A1EP2 C18 C11 C 0 1 N N S N N N 137.785 136.349 132.970 4.628 0.482 -0.375 C18 A1EP2 19 A1EP2 C19 C12 C 0 1 N N R N N N 136.520 136.879 133.635 3.279 1.114 -0.733 C19 A1EP2 20 A1EP2 O20 O5 O 0 1 N N N N N N 135.359 136.373 132.960 2.293 0.087 -0.861 O20 A1EP2 21 A1EP2 O22 O6 O 0 1 N N N N N N 135.318 138.834 134.341 2.181 2.553 -2.334 O22 A1EP2 22 A1EP2 O23 O7 O 0 1 N N N N N N 138.897 136.740 133.765 5.602 1.511 -0.189 O23 A1EP2 23 A1EP2 O24 O8 O 0 1 N N N N N N 138.800 134.368 132.042 5.714 -0.972 1.225 O24 A1EP2 24 A1EP2 O25 O9 O 0 1 N N N N N N 136.426 132.953 132.262 3.179 -2.076 1.961 O25 A1EP2 25 A1EP2 H1 H1 H 0 1 N N N N N N 134.015 133.109 136.033 -1.204 3.009 1.340 H1 A1EP2 26 A1EP2 H2 H2 H 0 1 N N N N N N 133.601 134.805 136.455 -1.135 3.182 -0.430 H2 A1EP2 27 A1EP2 H3 H3 H 0 1 N N N N N N 131.189 133.718 135.563 -2.453 0.882 1.084 H3 A1EP2 28 A1EP2 H4 H4 H 0 1 N N N N N N 132.424 133.008 134.469 -2.384 1.055 -0.686 H4 A1EP2 29 A1EP2 H5 H5 H 0 1 N N N N N N 133.220 135.656 134.687 0.093 1.012 -0.594 H5 A1EP2 30 A1EP2 H6 H6 H 0 1 N N N N N N 131.427 135.769 134.687 0.025 0.840 1.176 H6 A1EP2 31 A1EP2 H7 H7 H 0 1 N N N N N N 135.293 134.584 134.041 1.764 0.004 1.135 H7 A1EP2 32 A1EP2 H8 H8 H 0 1 N N N N N N 137.822 134.403 133.865 4.209 0.350 1.737 H8 A1EP2 33 A1EP2 H9 H9 H 0 1 N N N N N N 137.345 138.819 133.997 4.218 2.591 -1.989 H9 A1EP2 34 A1EP2 H10 H10 H 0 1 N N N N N N 136.301 138.703 132.540 3.615 1.161 -2.860 H10 A1EP2 35 A1EP2 H11 H11 H 0 1 N N N N N N 134.944 130.395 137.320 -4.646 6.913 0.692 H11 A1EP2 36 A1EP2 H12 H12 H 0 1 N N N N N N 133.442 130.783 136.414 -5.107 5.548 -0.354 H12 A1EP2 37 A1EP2 H13 H13 H 0 1 N N N N N N 134.843 131.906 136.354 -5.176 5.376 1.417 H13 A1EP2 38 A1EP2 H14 H14 H 0 1 N N N N N N 132.512 134.185 138.296 -3.613 3.224 -0.522 H14 A1EP2 39 A1EP2 H15 H15 H 0 1 N N N N N N 131.616 132.891 137.432 -3.681 3.052 1.248 H15 A1EP2 40 A1EP2 H16 H16 H 0 1 N N N N N N 136.410 134.730 131.187 3.668 -2.070 -0.047 H16 A1EP2 41 A1EP2 H17 H17 H 0 1 N N N N N N 137.865 136.781 131.962 4.945 -0.180 -1.180 H17 A1EP2 42 A1EP2 H18 H18 H 0 1 N N N N N N 136.512 136.556 134.686 2.982 1.807 0.054 H18 A1EP2 43 A1EP2 H19 H19 H 0 1 N N N N N N 135.271 139.782 134.299 2.189 3.054 -3.161 H19 A1EP2 44 A1EP2 H20 H20 H 0 1 N N N N N N 138.920 137.687 133.834 6.481 1.183 0.045 H20 A1EP2 45 A1EP2 H21 H21 H 0 1 N N N N N N 139.631 134.643 132.411 5.691 -1.500 2.035 H21 A1EP2 46 A1EP2 H22 H22 H 0 1 N N N N N N 135.620 132.642 131.867 2.494 -2.757 1.916 H22 A1EP2 47 A1EP2 H23 H23 H 0 1 N N N N N N 128.976 135.762 129.526 -4.996 -3.050 -1.590 H23 A1EP2 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EP2 O13 S10 DOUB N N 1 A1EP2 S10 O11 DOUB N N 2 A1EP2 S10 O12 SING N N 3 A1EP2 S10 O9 SING N N 4 A1EP2 O9 N8 SING N N 5 A1EP2 O24 C17 SING N N 6 A1EP2 N8 C7 DOUB N Z 7 A1EP2 C16 O25 SING N N 8 A1EP2 C16 C17 SING N N 9 A1EP2 C16 C15 SING N N 10 A1EP2 S14 C7 SING N N 11 A1EP2 S14 C15 SING N N 12 A1EP2 C17 C18 SING N N 13 A1EP2 C7 C6 SING N N 14 A1EP2 O20 C15 SING N N 15 A1EP2 O20 C19 SING N N 16 A1EP2 C18 C19 SING N N 17 A1EP2 C18 O23 SING N N 18 A1EP2 C21 C19 SING N N 19 A1EP2 C21 O22 SING N N 20 A1EP2 C6 C5 SING N N 21 A1EP2 C5 C4 SING N N 22 A1EP2 C4 C3 SING N N 23 A1EP2 C1 S2 SING N N 24 A1EP2 C3 S2 SING N N 25 A1EP2 C4 H1 SING N N 26 A1EP2 C4 H2 SING N N 27 A1EP2 C5 H3 SING N N 28 A1EP2 C5 H4 SING N N 29 A1EP2 C6 H5 SING N N 30 A1EP2 C6 H6 SING N N 31 A1EP2 C15 H7 SING N N 32 A1EP2 C17 H8 SING N N 33 A1EP2 C21 H9 SING N N 34 A1EP2 C21 H10 SING N N 35 A1EP2 C1 H11 SING N N 36 A1EP2 C1 H12 SING N N 37 A1EP2 C1 H13 SING N N 38 A1EP2 C3 H14 SING N N 39 A1EP2 C3 H15 SING N N 40 A1EP2 C16 H16 SING N N 41 A1EP2 C18 H17 SING N N 42 A1EP2 C19 H18 SING N N 43 A1EP2 O22 H19 SING N N 44 A1EP2 O23 H20 SING N N 45 A1EP2 O24 H21 SING N N 46 A1EP2 O25 H22 SING N N 47 A1EP2 O12 H23 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EP2 InChI InChI 1.06 "InChI=1S/C12H23NO9S3/c1-23-5-3-2-4-8(13-22-25(18,19)20)24-12-11(17)10(16)9(15)7(6-14)21-12/h7,9-12,14-17H,2-6H2,1H3,(H,18,19,20)/b13-8-/t7-,9-,10+,11-,12+/m1/s1" A1EP2 InChIKey InChI 1.06 GKUMMDFLKGFCKH-AHMUMSBHSA-N A1EP2 SMILES_CANONICAL CACTVS 3.385 "CSCCCC/C(S[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)=N/O[S](O)(=O)=O" A1EP2 SMILES CACTVS 3.385 "CSCCCCC(S[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)=NO[S](O)(=O)=O" A1EP2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSCCCC/C(=N/OS(=O)(=O)O)/S[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O" A1EP2 SMILES "OpenEye OEToolkits" 2.0.7 "CSCCCCC(=NOS(=O)(=O)O)SC1C(C(C(C(O1)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1EP2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (1~{Z})-5-methylsulfanyl-~{N}-sulfooxy-pentanimidothioate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1EP2 _pdbx_chem_comp_synonyms.name "4-Methylthiobutyl glucosinolate" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EP2 "Create component" 2025-05-01 PDBC A1EP2 "Initial release" 2026-04-22 RCSB #