data_A1EPW # _chem_comp.id A1EPW _chem_comp.name "(2~{S})-2-azanyl-6-[4-[2-[[5-chloranyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]amino]phenyl]-4-oxidanylidene-1,4$l^{5}-azaphosphinan-1-yl]hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C31 H42 Cl N8 O3 P" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-04-29 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 641.144 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EPW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UG8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EPW C10 C1 C 0 1 Y N N N N N 133.911 113.101 114.480 -7.918 -0.915 0.450 C10 A1EPW 1 A1EPW C13 C2 C 0 1 N N N N N N 137.361 112.075 113.671 -11.343 0.439 0.078 C13 A1EPW 2 A1EPW C15 C3 C 0 1 N N N N N N 137.121 113.033 111.499 -13.438 -0.702 -0.341 C15 A1EPW 3 A1EPW C17 C4 C 0 1 N N N N N N 134.850 111.448 112.995 -9.943 -2.059 0.026 C17 A1EPW 4 A1EPW C21 C5 C 0 1 Y N N N N N 132.102 115.681 120.165 -0.982 1.031 -0.430 C21 A1EPW 5 A1EPW C24 C6 C 0 1 Y N N N N N 134.949 115.813 119.623 0.407 -1.441 -0.594 C24 A1EPW 6 A1EPW C26 C7 C 0 1 Y N N N N N 137.020 116.783 119.373 2.304 -2.696 0.153 C26 A1EPW 7 A1EPW C28 C8 C 0 1 Y N N N N N 135.419 117.880 120.840 2.316 -0.308 0.330 C28 A1EPW 8 A1EPW CL01 CL1 CL 0 0 N N N N N N 130.835 116.228 122.369 -0.723 3.660 -1.116 CL01 A1EPW 9 A1EPW C02 C9 C 0 1 Y N N N N N 130.935 115.535 120.817 -1.631 2.228 -0.743 C02 A1EPW 10 A1EPW N N1 N 0 1 N N N Y Y N 134.297 111.998 127.014 9.075 -3.064 -0.710 N A1EPW 11 A1EPW C03 C10 C 0 1 Y N N N N N 129.842 114.909 120.349 -3.013 2.246 -0.749 C03 A1EPW 12 A1EPW CA C11 C 0 1 N N S N Y N 135.443 112.855 127.058 10.009 -1.934 -0.813 CA A1EPW 13 A1EPW N04 N2 N 0 1 Y N N N N N 129.938 114.410 119.179 -3.677 1.136 -0.460 N04 A1EPW 14 A1EPW C C12 C 0 1 N N N N Y Y 136.220 112.529 128.270 11.362 -2.351 -0.297 C A1EPW 15 A1EPW C05 C13 C 0 1 Y N N N N N 131.021 114.512 118.521 -3.035 0.015 -0.167 C05 A1EPW 16 A1EPW O O1 O 0 1 N N N N Y Y 135.695 112.661 129.267 11.461 -3.310 0.432 O A1EPW 17 A1EPW N06 N3 N 0 1 N N N N N N 130.874 113.889 117.230 -3.765 -1.125 0.124 N06 A1EPW 18 A1EPW CB C14 C 0 1 N N N N N N 135.024 114.218 127.192 9.484 -0.762 0.019 CB A1EPW 19 A1EPW C07 C15 C 0 1 Y N N N N N 131.951 113.673 116.295 -5.160 -1.055 0.233 C07 A1EPW 20 A1EPW CG C16 C 0 1 N N N N N N 135.821 115.347 126.608 8.170 -0.258 -0.582 CG A1EPW 21 A1EPW C08 C17 C 0 1 Y N N N N N 131.816 112.608 115.480 -5.757 0.070 0.788 C08 A1EPW 22 A1EPW CD C18 C 0 1 N N N N N N 134.886 116.543 126.480 7.646 0.914 0.250 CD A1EPW 23 A1EPW C09 C19 C 0 1 Y N N N N N 132.786 112.314 114.576 -7.132 0.140 0.895 C09 A1EPW 24 A1EPW CE C20 C 0 1 N N N N N N 135.651 117.845 126.425 6.332 1.418 -0.350 CE A1EPW 25 A1EPW N11 N4 N 0 1 N N N N N N 134.985 112.799 113.504 -9.311 -0.842 0.554 N11 A1EPW 26 A1EPW NZ N5 N 0 1 N N N N N N 135.032 118.836 125.495 5.829 2.544 0.448 NZ A1EPW 27 A1EPW C12 C21 C 0 1 N N N N N N 136.251 112.972 114.190 -9.828 0.354 -0.126 C12 A1EPW 28 A1EPW N14 N6 N 0 1 N N N N N N 137.187 111.791 112.267 -11.975 -0.779 -0.450 N14 A1EPW 29 A1EPW C16 C22 C 0 1 N N N N N N 135.978 111.033 112.059 -11.458 -1.974 0.230 C16 A1EPW 30 A1EPW C18 C23 C 0 1 Y N N N N N 134.042 114.185 115.311 -7.320 -2.040 -0.104 C18 A1EPW 31 A1EPW C19 C24 C 0 1 Y N N N N N 133.057 114.469 116.218 -5.946 -2.110 -0.212 C19 A1EPW 32 A1EPW N20 N7 N 0 1 Y N N N N N 132.101 115.132 118.973 -1.712 -0.045 -0.155 N20 A1EPW 33 A1EPW N22 N8 N 0 1 N N N N N N 133.152 116.477 120.907 0.403 0.966 -0.411 N22 A1EPW 34 A1EPW C23 C25 C 0 1 Y N N N N N 134.529 116.807 120.470 1.043 -0.263 -0.225 C23 A1EPW 35 A1EPW C25 C26 C 0 1 Y N N N N N 136.175 115.784 119.064 1.040 -2.654 -0.404 C25 A1EPW 36 A1EPW C27 C27 C 0 1 Y N N N N N 136.634 117.782 120.226 2.940 -1.525 0.522 C27 A1EPW 37 A1EPW P29 P1 P 0 1 N N N N N N 135.300 119.468 121.941 3.151 1.228 0.814 P29 A1EPW 38 A1EPW C30 C28 C 0 1 N N N N N N 136.228 119.798 123.322 3.687 2.147 -0.680 C30 A1EPW 39 A1EPW C31 C29 C 0 1 N N N N N N 136.245 118.795 124.543 4.706 3.203 -0.223 C31 A1EPW 40 A1EPW C42 C30 C 0 1 N N N N N N 133.941 119.096 124.425 5.517 2.120 1.815 C42 A1EPW 41 A1EPW C43 C31 C 0 1 N N N N N N 134.280 118.591 122.969 4.664 0.842 1.775 C43 A1EPW 42 A1EPW O44 O2 O 0 1 N N N N N N 134.308 120.357 121.384 2.238 2.065 1.624 O44 A1EPW 43 A1EPW H1 H1 H 0 1 N N N N N N 137.351 111.129 114.233 -11.562 0.530 1.142 H1 A1EPW 44 A1EPW H10 H2 H 0 1 N N N N N N 138.328 112.578 113.818 -11.732 1.309 -0.450 H10 A1EPW 45 A1EPW H3 H3 H 0 1 N N N N N N 138.043 113.612 111.657 -13.800 0.155 -0.909 H3 A1EPW 46 A1EPW H4 H4 H 0 1 N N N N N N 137.015 112.798 110.430 -13.880 -1.615 -0.739 H4 A1EPW 47 A1EPW H5 H5 H 0 1 N N N N N N 136.255 113.624 111.832 -13.718 -0.589 0.706 H5 A1EPW 48 A1EPW H6 H6 H 0 1 N N N N N N 133.899 111.376 112.447 -9.724 -2.151 -1.038 H6 A1EPW 49 A1EPW H7 H7 H 0 1 N N N N N N 134.834 110.755 113.849 -9.553 -2.930 0.553 H7 A1EPW 50 A1EPW H8 H8 H 0 1 N N N N N N 134.262 115.012 119.392 -0.583 -1.409 -1.026 H8 A1EPW 51 A1EPW H9 H9 H 0 1 N N N N N N 138.011 116.798 118.945 2.795 -3.646 0.305 H9 A1EPW 52 A1EPW H H10 H 0 1 N N N Y Y N 134.594 111.048 126.920 8.977 -3.365 0.248 H A1EPW 53 A1EPW H2 H11 H 0 1 N N N Y Y N 133.771 112.101 127.858 8.179 -2.830 -1.109 H2 A1EPW 54 A1EPW H13 H13 H 0 1 N N N N N N 128.935 114.833 120.930 -3.546 3.155 -0.987 H13 A1EPW 55 A1EPW HA H14 H 0 1 N N N N Y N 136.065 112.723 126.161 10.096 -1.629 -1.856 HA A1EPW 56 A1EPW H16 H16 H 0 1 N N N N N N 129.960 113.585 116.963 -3.311 -1.973 0.252 H16 A1EPW 57 A1EPW HB2 H17 H 0 1 N N N N N N 134.953 114.415 128.272 9.313 -1.091 1.043 HB2 A1EPW 58 A1EPW HB3 H18 H 0 1 N N N N N N 134.023 114.280 126.741 10.219 0.044 0.014 HB3 A1EPW 59 A1EPW HG2 H19 H 0 1 N N N N N N 136.206 115.063 125.618 8.342 0.072 -1.607 HG2 A1EPW 60 A1EPW HG3 H20 H 0 1 N N N N N N 136.662 115.596 127.271 7.436 -1.063 -0.577 HG3 A1EPW 61 A1EPW H21 H21 H 0 1 N N N N N N 130.935 111.987 115.546 -5.146 0.890 1.135 H21 A1EPW 62 A1EPW HD2 H22 H 0 1 N N N N N N 134.211 116.562 127.348 7.475 0.585 1.275 HD2 A1EPW 63 A1EPW HD3 H23 H 0 1 N N N N N N 134.295 116.437 125.558 8.380 1.720 0.245 HD3 A1EPW 64 A1EPW H24 H24 H 0 1 N N N N N N 132.674 111.457 113.928 -7.596 1.015 1.326 H24 A1EPW 65 A1EPW HE2 H25 H 0 1 N N N N N N 136.677 117.637 126.086 6.504 1.748 -1.375 HE2 A1EPW 66 A1EPW HE3 H26 H 0 1 N N N N N N 135.680 118.280 127.435 5.598 0.613 -0.346 HE3 A1EPW 67 A1EPW H28 H28 H 0 1 N N N N N N 136.568 114.019 114.072 -9.608 0.290 -1.192 H28 A1EPW 68 A1EPW H29 H29 H 0 1 N N N N N N 136.099 112.753 115.257 -9.355 1.242 0.291 H29 A1EPW 69 A1EPW H31 H31 H 0 1 N N N N N N 135.645 111.181 111.021 -11.931 -2.863 -0.187 H31 A1EPW 70 A1EPW H32 H32 H 0 1 N N N N N N 136.198 109.968 112.225 -11.678 -1.911 1.295 H32 A1EPW 71 A1EPW H33 H33 H 0 1 N N N N N N 134.919 114.812 115.250 -7.931 -2.861 -0.451 H33 A1EPW 72 A1EPW H34 H34 H 0 1 N N N N N N 133.155 115.323 116.872 -5.481 -2.984 -0.643 H34 A1EPW 73 A1EPW H35 H35 H 0 1 N N N N N N 132.883 116.824 121.805 0.928 1.774 -0.527 H35 A1EPW 74 A1EPW H36 H36 H 0 1 N N N N N N 136.467 114.989 118.394 0.546 -3.571 -0.691 H36 A1EPW 75 A1EPW H37 H37 H 0 1 N N N N N N 137.354 118.561 120.431 3.926 -1.561 0.962 H37 A1EPW 76 A1EPW H38 H38 H 0 1 N N N N N N 137.270 119.898 122.984 4.155 1.462 -1.388 H38 A1EPW 77 A1EPW H39 H39 H 0 1 N N N N N N 135.875 120.763 123.714 2.830 2.634 -1.144 H39 A1EPW 78 A1EPW H40 H40 H 0 1 N N N N N N 136.313 117.776 124.135 4.226 3.896 0.468 H40 A1EPW 79 A1EPW H41 H41 H 0 1 N N N N N N 137.143 119.012 125.139 5.074 3.752 -1.090 H41 A1EPW 80 A1EPW H42 H42 H 0 1 N N N N N N 133.768 120.181 124.375 6.444 1.922 2.354 H42 A1EPW 81 A1EPW H43 H43 H 0 1 N N N N N N 133.019 118.592 124.752 4.964 2.910 2.323 H43 A1EPW 82 A1EPW H44 H44 H 0 1 N N N N N N 133.319 118.494 122.443 4.394 0.544 2.788 H44 A1EPW 83 A1EPW H45 H45 H 0 1 N N N N N N 134.737 117.597 123.084 5.219 0.040 1.287 H45 A1EPW 84 A1EPW OXT O3 O 0 1 N N N N Y Y 137.509 112.304 128.236 12.456 -1.657 -0.646 OXT A1EPW 85 A1EPW HXT H12 H 0 1 N N N N Y Y 137.850 112.281 129.122 13.302 -1.963 -0.290 HXT A1EPW 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EPW C15 N14 SING N N 1 A1EPW C16 N14 SING N N 2 A1EPW C16 C17 SING N N 3 A1EPW N14 C13 SING N N 4 A1EPW C17 N11 SING N N 5 A1EPW N11 C12 SING N N 6 A1EPW N11 C10 SING N N 7 A1EPW C13 C12 SING N N 8 A1EPW C10 C09 DOUB Y N 9 A1EPW C10 C18 SING Y N 10 A1EPW C09 C08 SING Y N 11 A1EPW C18 C19 DOUB Y N 12 A1EPW C08 C07 DOUB Y N 13 A1EPW C19 C07 SING Y N 14 A1EPW C07 N06 SING N N 15 A1EPW N06 C05 SING N N 16 A1EPW C05 N20 DOUB Y N 17 A1EPW C05 N04 SING Y N 18 A1EPW N20 C21 SING Y N 19 A1EPW C25 C26 DOUB Y N 20 A1EPW C25 C24 SING Y N 21 A1EPW N04 C03 DOUB Y N 22 A1EPW C26 C27 SING Y N 23 A1EPW C24 C23 DOUB Y N 24 A1EPW C21 C02 DOUB Y N 25 A1EPW C21 N22 SING N N 26 A1EPW C27 C28 DOUB Y N 27 A1EPW C03 C02 SING Y N 28 A1EPW C23 C28 SING Y N 29 A1EPW C23 N22 SING N N 30 A1EPW C02 CL01 SING N N 31 A1EPW C28 P29 SING N N 32 A1EPW O44 P29 DOUB N N 33 A1EPW P29 C43 SING N N 34 A1EPW P29 C30 SING N N 35 A1EPW C43 C42 SING N N 36 A1EPW C30 C31 SING N N 37 A1EPW C42 NZ SING N N 38 A1EPW C31 NZ SING N N 39 A1EPW NZ CE SING N N 40 A1EPW CE CD SING N N 41 A1EPW CD CG SING N N 42 A1EPW CG CB SING N N 43 A1EPW N CA SING N N 44 A1EPW CA CB SING N N 45 A1EPW CA C SING N N 46 A1EPW C O DOUB N N 47 A1EPW C13 H1 SING N N 48 A1EPW C13 H10 SING N N 49 A1EPW C15 H3 SING N N 50 A1EPW C15 H4 SING N N 51 A1EPW C15 H5 SING N N 52 A1EPW C17 H6 SING N N 53 A1EPW C17 H7 SING N N 54 A1EPW C24 H8 SING N N 55 A1EPW C26 H9 SING N N 56 A1EPW N H SING N N 57 A1EPW N H2 SING N N 58 A1EPW C03 H13 SING N N 59 A1EPW CA HA SING N N 60 A1EPW N06 H16 SING N N 61 A1EPW CB HB2 SING N N 62 A1EPW CB HB3 SING N N 63 A1EPW CG HG2 SING N N 64 A1EPW CG HG3 SING N N 65 A1EPW C08 H21 SING N N 66 A1EPW CD HD2 SING N N 67 A1EPW CD HD3 SING N N 68 A1EPW C09 H24 SING N N 69 A1EPW CE HE2 SING N N 70 A1EPW CE HE3 SING N N 71 A1EPW C12 H28 SING N N 72 A1EPW C12 H29 SING N N 73 A1EPW C16 H31 SING N N 74 A1EPW C16 H32 SING N N 75 A1EPW C18 H33 SING N N 76 A1EPW C19 H34 SING N N 77 A1EPW N22 H35 SING N N 78 A1EPW C25 H36 SING N N 79 A1EPW C27 H37 SING N N 80 A1EPW C30 H38 SING N N 81 A1EPW C30 H39 SING N N 82 A1EPW C31 H40 SING N N 83 A1EPW C31 H41 SING N N 84 A1EPW C42 H42 SING N N 85 A1EPW C42 H43 SING N N 86 A1EPW C43 H44 SING N N 87 A1EPW C43 H45 SING N N 88 A1EPW C OXT SING N N 89 A1EPW OXT HXT SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EPW InChI InChI 1.06 "InChI=1S/C31H42ClN8O3P/c1-38-14-16-40(17-15-38)24-11-9-23(10-12-24)35-31-34-22-25(32)29(37-31)36-27-7-2-3-8-28(27)44(43)20-18-39(19-21-44)13-5-4-6-26(33)30(41)42/h2-3,7-12,22,26H,4-6,13-21,33H2,1H3,(H,41,42)(H2,34,35,36,37)/t26-/m0/s1" A1EPW InChIKey InChI 1.06 OPBIVRUVYREHLQ-SANMLTNESA-N A1EPW SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(Nc3ncc(Cl)c(Nc4ccccc4[P]5(=O)CCN(CCCC[C@H](N)C(O)=O)CC5)n3)cc2" A1EPW SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(Nc3ncc(Cl)c(Nc4ccccc4[P]5(=O)CCN(CCCC[CH](N)C(O)=O)CC5)n3)cc2" A1EPW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)Nc3ncc(c(n3)Nc4ccccc4P5(=O)CCN(CC5)CCCC[C@@H](C(=O)O)N)Cl" A1EPW SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc(cc2)Nc3ncc(c(n3)Nc4ccccc4P5(=O)CCN(CC5)CCCCC(C(=O)O)N)Cl" # _pdbx_chem_comp_identifier.comp_id A1EPW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[4-[2-[[5-chloranyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]amino]phenyl]-4-oxidanylidene-1,4$l^{5}-azaphosphinan-1-yl]hexanoic acid" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EPW _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EPW "Create component" 2025-04-29 PDBC A1EPW "Initial release" 2026-10-28 RCSB #