data_A1EQF # _chem_comp.id A1EQF _chem_comp.name "(5~{S},16~{S})-16-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylamino]-2,11,12,17-tetraoxa-5,8-diaza-1$l^{4}-manganatricyclo[6.3.3.3^{1,5}]heptadecane-3,10,13-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H22 Mn N4 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-13 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.305 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EQF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UV6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EQF C1 C1 C 0 1 N N N N N N 29.970 42.772 16.417 -6.169 0.423 0.781 C1 A1EQF 1 A1EQF C2 C2 C 0 1 N N N N N N 29.121 44.008 16.630 -7.280 -0.585 0.984 C2 A1EQF 2 A1EQF C3 C3 C 0 1 N N N N N N 28.498 44.324 15.282 -7.020 -1.635 -0.116 C3 A1EQF 3 A1EQF C4 C4 C 0 1 N N N N N N 29.081 43.322 14.300 -5.790 -1.110 -0.824 C4 A1EQF 4 A1EQF C7 C5 C 0 1 N N N N N N 31.883 41.715 13.596 -2.990 0.318 0.060 C7 A1EQF 5 A1EQF MN MN1 MN 0 0 N N N N N N 36.378 41.363 11.307 1.916 -0.103 -0.463 MN A1EQF 6 A1EQF C6 C6 C 0 1 N N N N N N 30.660 41.347 14.430 -4.233 0.793 -0.695 C6 A1EQF 7 A1EQF O1 O1 O 0 1 N N N N N N 30.567 42.135 17.251 -5.999 1.423 1.444 O1 A1EQF 8 A1EQF O4 O2 O 0 1 N N N N N N 28.877 43.252 13.114 -5.242 -1.641 -1.766 O4 A1EQF 9 A1EQF N5 N1 N 0 1 N N N N N N 29.930 42.463 15.035 -5.400 0.031 -0.242 N5 A1EQF 10 A1EQF N8 N2 N 0 1 N N N N N N 32.455 40.527 12.992 -1.820 1.082 -0.394 N8 A1EQF 11 A1EQF CY5 C7 C 0 1 N N S N N N 33.481 40.682 11.891 -0.605 0.652 0.311 CY5 A1EQF 12 A1EQF OY1 O3 O 0 1 N N N N N N 34.359 41.550 12.338 0.117 -0.228 -0.537 OY1 A1EQF 13 A1EQF CY1 C8 C 0 1 N N N N N N 34.157 39.233 11.773 0.163 1.894 0.747 CY1 A1EQF 14 A1EQF NYA N3 N 0 1 N N S N N N 35.108 39.483 10.684 1.504 1.603 1.163 NYA A1EQF 15 A1EQF CYA C9 C 0 1 N N N N N N 34.365 39.753 9.432 1.769 0.838 2.324 CYA A1EQF 16 A1EQF CYB C10 C 0 1 N N N N N N 35.186 40.566 8.447 3.106 0.110 2.316 CYB A1EQF 17 A1EQF NYB N4 N 0 1 N N N N N N 35.678 41.818 9.054 3.168 -0.938 1.349 NYB A1EQF 18 A1EQF CY3 C11 C 0 1 N N N N N N 34.656 42.870 9.158 2.315 -2.095 1.444 CY3 A1EQF 19 A1EQF CY7 C12 C 0 1 N N N N N N 35.059 43.830 10.276 2.104 -2.708 0.070 CY7 A1EQF 20 A1EQF OY7 O4 O 0 1 N N N N N N 34.369 44.902 10.378 2.104 -3.904 -0.103 OY7 A1EQF 21 A1EQF OY3 O5 O 0 1 N N N N N N 35.992 43.542 11.043 1.914 -1.835 -0.953 OY3 A1EQF 22 A1EQF CY2 C13 C 0 1 N N N N N N 36.875 42.292 8.342 4.436 -1.265 0.749 CY2 A1EQF 23 A1EQF CY6 C14 C 0 1 N N N N N N 38.146 41.630 8.847 4.613 -0.444 -0.499 CY6 A1EQF 24 A1EQF OY6 O6 O 0 1 N N N N N N 39.176 41.793 8.164 5.721 -0.310 -0.961 OY6 A1EQF 25 A1EQF OY2 O7 O 0 1 N N N N N N 38.081 40.993 9.937 3.584 0.139 -1.107 OY2 A1EQF 26 A1EQF CY4 C15 C 0 1 N N N N N N 36.081 38.378 10.581 2.474 2.416 0.496 CY4 A1EQF 27 A1EQF CY8 C16 C 0 1 N N N N N N 37.057 38.482 11.743 1.804 2.519 -0.864 CY8 A1EQF 28 A1EQF OY8 O8 O 0 1 N N N N N N 37.760 37.439 11.969 1.604 3.581 -1.404 OY8 A1EQF 29 A1EQF OY4 O9 O 0 1 N N N N N N 37.130 39.533 12.409 1.444 1.337 -1.436 OY4 A1EQF 30 A1EQF H1 H1 H 0 1 N N N N N N 28.338 43.810 17.376 -7.210 -1.039 1.972 H1 A1EQF 31 A1EQF H2 H2 H 0 1 N N N N N N 29.746 44.847 16.969 -8.253 -0.115 0.844 H2 A1EQF 32 A1EQF H32 H3 H 0 1 N N N N N N 27.404 44.216 15.333 -6.822 -2.611 0.325 H32 A1EQF 33 A1EQF H31 H4 H 0 1 N N N N N N 28.752 45.350 14.976 -7.865 -1.687 -0.803 H31 A1EQF 34 A1EQF H71 H5 H 0 1 N N N N N N 31.584 42.417 12.804 -3.133 0.473 1.129 H71 A1EQF 35 A1EQF H72 H6 H 0 1 N N N N N N 32.634 42.191 14.244 -2.829 -0.743 -0.135 H72 A1EQF 36 A1EQF H62 H7 H 0 1 N N N N N N 29.961 40.803 13.778 -4.394 1.853 -0.500 H62 A1EQF 37 A1EQF H61 H8 H 0 1 N N N N N N 30.995 40.685 15.242 -4.090 0.638 -1.764 H61 A1EQF 38 A1EQF H3 H9 H 0 1 N N N N N N 32.890 40.006 13.726 -1.704 1.006 -1.393 H3 A1EQF 39 A1EQF H5 H11 H 0 1 N N N N N N 33.006 40.956 10.937 -0.902 0.103 1.204 H5 A1EQF 40 A1EQF HY12 H12 H 0 0 N N N N N N 34.668 38.944 12.703 0.199 2.596 -0.086 HY12 A1EQF 41 A1EQF HY11 H13 H 0 0 N N N N N N 33.422 38.460 11.504 -0.367 2.362 1.576 HY11 A1EQF 42 A1EQF HYA2 H14 H 0 0 N N N N N N 34.097 38.794 8.964 1.744 1.503 3.187 HYA2 A1EQF 43 A1EQF HYA1 H15 H 0 0 N N N N N N 33.449 40.311 9.676 0.975 0.100 2.439 HYA1 A1EQF 44 A1EQF HYB2 H16 H 0 0 N N N N N N 36.047 39.966 8.119 3.896 0.830 2.103 HYB2 A1EQF 45 A1EQF HYB1 H17 H 0 0 N N N N N N 34.559 40.813 7.578 3.280 -0.315 3.304 HYB1 A1EQF 46 A1EQF HY31 H19 H 0 0 N N N N N N 34.588 43.417 8.206 2.778 -2.832 2.100 HY31 A1EQF 47 A1EQF HY32 H20 H 0 0 N N N N N N 33.681 42.418 9.391 1.352 -1.800 1.860 HY32 A1EQF 48 A1EQF HY21 H21 H 0 0 N N N N N N 36.761 42.069 7.271 5.240 -1.042 1.451 HY21 A1EQF 49 A1EQF HY22 H22 H 0 0 N N N N N N 36.963 43.379 8.482 4.456 -2.325 0.495 HY22 A1EQF 50 A1EQF HY41 H23 H 0 0 N N N N N N 35.553 37.414 10.625 2.569 3.393 0.969 HY41 A1EQF 51 A1EQF HY42 H24 H 0 0 N N N N N N 36.628 38.453 9.630 3.438 1.913 0.429 HY42 A1EQF 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EQF C1 C2 SING N N 1 A1EQF C1 O1 DOUB N N 2 A1EQF C1 N5 SING N N 3 A1EQF C2 C3 SING N N 4 A1EQF C3 C4 SING N N 5 A1EQF C4 O4 DOUB N N 6 A1EQF C4 N5 SING N N 7 A1EQF C7 C6 SING N N 8 A1EQF C7 N8 SING N N 9 A1EQF MN OY1 SING N N 10 A1EQF MN OY3 SING N N 11 A1EQF MN OY2 SING N N 12 A1EQF MN OY4 SING N N 13 A1EQF C6 N5 SING N N 14 A1EQF N8 CY5 SING N N 15 A1EQF CY5 OY1 SING N N 16 A1EQF CY5 CY1 SING N N 17 A1EQF CY1 NYA SING N N 18 A1EQF NYA CYA SING N N 19 A1EQF NYA CY4 SING N N 20 A1EQF CYA CYB SING N N 21 A1EQF CYB NYB SING N N 22 A1EQF NYB CY3 SING N N 23 A1EQF NYB CY2 SING N N 24 A1EQF CY3 CY7 SING N N 25 A1EQF CY7 OY7 DOUB N N 26 A1EQF CY7 OY3 SING N N 27 A1EQF CY2 CY6 SING N N 28 A1EQF CY6 OY6 DOUB N N 29 A1EQF CY6 OY2 SING N N 30 A1EQF CY4 CY8 SING N N 31 A1EQF CY8 OY8 DOUB N N 32 A1EQF CY8 OY4 SING N N 33 A1EQF C2 H1 SING N N 34 A1EQF C2 H2 SING N N 35 A1EQF C3 H32 SING N N 36 A1EQF C3 H31 SING N N 37 A1EQF C7 H71 SING N N 38 A1EQF C7 H72 SING N N 39 A1EQF C6 H62 SING N N 40 A1EQF C6 H61 SING N N 41 A1EQF N8 H3 SING N N 42 A1EQF CY5 H5 SING N N 43 A1EQF CY1 HY12 SING N N 44 A1EQF CY1 HY11 SING N N 45 A1EQF CYA HYA2 SING N N 46 A1EQF CYA HYA1 SING N N 47 A1EQF CYB HYB2 SING N N 48 A1EQF CYB HYB1 SING N N 49 A1EQF CY3 HY31 SING N N 50 A1EQF CY3 HY32 SING N N 51 A1EQF CY2 HY21 SING N N 52 A1EQF CY2 HY22 SING N N 53 A1EQF CY4 HY41 SING N N 54 A1EQF CY4 HY42 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EQF InChI InChI 1.06 "InChI=1S/C16H25N4O9.Mn/c21-11(17-3-4-20-12(22)1-2-13(20)23)7-18(8-14(24)25)5-6-19(9-15(26)27)10-16(28)29;/h11,17H,1-10H2,(H,24,25)(H,26,27)(H,28,29);/q-1;+4/p-3/t11-;/m0./s1" A1EQF InChIKey InChI 1.06 MONZMKOQRHPWJD-MERQFXBCSA-K A1EQF SMILES_CANONICAL CACTVS 3.385 "O=C1C[N@]2CCN3CC(=O)O[Mn](O[C@@H](C2)NCCN4C(=O)CCC4=O)(O1)OC(=O)C3" A1EQF SMILES CACTVS 3.385 "O=C1C[N]2CCN3CC(=O)O[Mn](O[CH](C2)NCCN4C(=O)CCC4=O)(O1)OC(=O)C3" A1EQF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC(=O)N(C1=O)CCN[C@@H]2C[N@@]3CCN4CC(=O)O[Mn](O2)(OC(=O)C3)OC(=O)C4" A1EQF SMILES "OpenEye OEToolkits" 2.0.7 "C1CC(=O)N(C1=O)CCNC2CN3CCN4CC(=O)O[Mn](O2)(OC(=O)C3)OC(=O)C4" # _pdbx_chem_comp_identifier.comp_id A1EQF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S},16~{S})-16-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylamino]-2,11,12,17-tetraoxa-5,8-diaza-1$l^{4}-manganatricyclo[6.3.3.3^{1,5}]heptadecane-3,10,13-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EQF "Create component" 2025-05-13 PDBC A1EQF "Modify coordinates" 2025-07-17 PDBC A1EQF "Modify name" 2025-07-17 PDBC A1EQF "Initial release" 2025-07-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EQF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #