data_A1ER0 # _chem_comp.id A1ER0 _chem_comp.name "N-[5-[[4-[[(3R,3aR,6R,6aR)-3-methoxy-2,3,3a,5,6,6a-hexahydrofuro[3,2-b]furan-6-yl]oxy]-5-chloranyl-pyrimidin-2-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]-2-azanyl-ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 Cl N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-17 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 536.024 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ER0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VFO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ER0 C4 C1 C 0 1 Y N N N N N -12.864 -33.532 -17.733 -2.735 -1.316 -0.217 C4 A1ER0 1 A1ER0 C5 C2 C 0 1 Y N N N N N -11.549 -34.019 -17.615 -2.190 -2.597 -0.304 C5 A1ER0 2 A1ER0 C6 C3 C 0 1 Y N N N N N -10.747 -33.605 -16.533 -0.816 -2.735 -0.225 C6 A1ER0 3 A1ER0 N1 N1 N 0 1 Y N N N N N -11.316 -32.750 -15.666 -0.064 -1.656 -0.071 N1 A1ER0 4 A1ER0 N3 N2 N 0 1 Y N N N N N -13.327 -32.682 -16.800 -1.922 -0.278 -0.062 N3 A1ER0 5 A1ER0 CAY C4 C 0 1 N N N N N N -15.808 -30.550 -24.278 -10.219 1.747 0.478 CAY A1ER0 6 A1ER0 OAX O1 O 0 1 N N N N N N -15.397 -31.587 -23.237 -8.833 1.546 0.762 OAX A1ER0 7 A1ER0 CAU C5 C 0 1 N N R N N N -14.731 -30.977 -21.914 -8.064 1.125 -0.367 CAU A1ER0 8 A1ER0 CAV C6 C 0 1 N N N N N N -13.400 -31.435 -21.908 -8.007 -0.414 -0.447 CAV A1ER0 9 A1ER0 OAW O2 O 0 1 N N N N N N -13.139 -32.073 -20.537 -6.678 -0.780 -0.828 OAW A1ER0 10 A1ER0 CAT C7 C 0 1 N N R N N N -14.440 -31.858 -19.738 -5.866 0.386 -1.002 CAT A1ER0 11 A1ER0 CAS C8 C 0 1 N N R N N N -15.414 -31.412 -20.730 -6.575 1.514 -0.192 CAS A1ER0 12 A1ER0 OAR O3 O 0 1 N N N N N N -16.375 -32.657 -20.993 -6.196 1.303 1.172 OAR A1ER0 13 A1ER0 CAQ C9 C 0 1 N N N N N N -15.679 -33.823 -20.126 -4.995 0.529 1.247 CAQ A1ER0 14 A1ER0 CAP C10 C 0 1 N N R N N N -14.870 -33.075 -19.133 -4.554 0.210 -0.196 CAP A1ER0 15 A1ER0 OAG O4 O 0 1 N N N N N N -13.634 -33.987 -18.831 -4.076 -1.133 -0.294 OAG A1ER0 16 A1ER0 CL5 CL1 CL 0 0 N N N N N N -10.941 -35.116 -18.813 -3.212 -3.985 -0.506 CL5 A1ER0 17 A1ER0 C2 C11 C 0 1 Y N N N N N -12.560 -32.301 -15.785 -0.611 -0.452 0.009 C2 A1ER0 18 A1ER0 NAH N3 N 0 1 N N N N N N -13.023 -31.389 -14.784 0.209 0.653 0.171 NAH A1ER0 19 A1ER0 CAI C12 C 0 1 Y N N N N N -14.372 -31.024 -14.478 1.587 0.481 0.356 CAI A1ER0 20 A1ER0 CAJ C13 C 0 1 Y N N N N N -15.390 -31.016 -15.433 2.477 1.420 -0.148 CAJ A1ER0 21 A1ER0 CAK C14 C 0 1 Y N N N N N -16.690 -30.630 -15.091 3.840 1.250 0.036 CAK A1ER0 22 A1ER0 NAZ N4 N 0 1 N N N N N N -17.676 -30.692 -16.148 4.741 2.196 -0.471 NAZ A1ER0 23 A1ER0 C C15 C 0 1 N N N N N N -18.192 -29.562 -16.881 4.391 3.496 -0.528 C A1ER0 24 A1ER0 O O5 O 0 1 N N N N N N -17.826 -28.422 -16.630 3.268 3.836 -0.220 O A1ER0 25 A1ER0 CA C16 C 0 1 N N N N N N -19.228 -29.828 -17.985 5.396 4.528 -0.973 CA A1ER0 26 A1ER0 N N5 N 0 1 N N N N N N -19.071 -31.164 -18.505 4.774 5.859 -0.949 N A1ER0 27 A1ER0 CAN C17 C 0 1 Y N N N N N -14.665 -30.623 -13.166 2.061 -0.624 1.049 CAN A1ER0 28 A1ER0 CAM C18 C 0 1 Y N N N N N -15.958 -30.235 -12.812 3.420 -0.797 1.234 CAM A1ER0 29 A1ER0 CAL C19 C 0 1 Y N N N N N -16.987 -30.239 -13.759 4.314 0.135 0.728 CAL A1ER0 30 A1ER0 NBA N6 N 0 1 N N N N N N -18.306 -29.833 -13.307 5.692 -0.041 0.916 NBA A1ER0 31 A1ER0 CBG C20 C 0 1 N N N N N N -18.516 -28.514 -12.752 6.039 0.010 2.342 CBG A1ER0 32 A1ER0 CBF C21 C 0 1 N N N N N N -19.421 -30.756 -13.365 6.150 -1.297 0.306 CBF A1ER0 33 A1ER0 CBH C22 C 0 1 N N N N N N -19.675 -31.350 -11.963 7.679 -1.337 0.310 CBH A1ER0 34 A1ER0 NBI N7 N 0 1 N N N N N N -20.644 -30.566 -11.228 8.138 -2.592 -0.300 NBI A1ER0 35 A1ER0 CBK C23 C 0 1 N N N N N N -20.498 -30.793 -9.807 7.790 -2.643 -1.726 CBK A1ER0 36 A1ER0 CBJ C24 C 0 1 N N N N N N -21.977 -30.925 -11.656 9.582 -2.776 -0.103 CBJ A1ER0 37 A1ER0 H1 H1 H 0 1 N N N N N N -9.733 -33.955 -16.407 -0.361 -3.713 -0.289 H1 A1ER0 38 A1ER0 H2 H2 H 0 1 N N N N N N -16.253 -31.058 -25.146 -10.656 0.814 0.121 H2 A1ER0 39 A1ER0 H3 H3 H 0 1 N N N N N N -16.545 -29.862 -23.839 -10.733 2.065 1.385 H3 A1ER0 40 A1ER0 H4 H4 H 0 1 N N N N N N -14.922 -29.983 -24.600 -10.325 2.515 -0.288 H4 A1ER0 41 A1ER0 H5 H5 H 0 1 N N N N N N -14.763 -29.880 -21.991 -8.470 1.545 -1.287 H5 A1ER0 42 A1ER0 H6 H6 H 0 1 N N N N N N -13.256 -32.181 -22.703 -8.244 -0.844 0.527 H6 A1ER0 43 A1ER0 H7 H7 H 0 1 N N N N N N -12.712 -30.592 -22.067 -8.718 -0.772 -1.192 H7 A1ER0 44 A1ER0 H8 H8 H 0 1 N N N N N N -14.277 -31.077 -18.980 -5.695 0.633 -2.050 H8 A1ER0 45 A1ER0 H9 H9 H 0 1 N N N N N N -16.020 -30.592 -20.317 -6.348 2.516 -0.558 H9 A1ER0 46 A1ER0 H10 H10 H 0 1 N N N N N N -16.435 -34.448 -19.628 -4.217 1.101 1.753 H10 A1ER0 47 A1ER0 H11 H11 H 0 1 N N N N N N -15.039 -34.456 -20.759 -5.185 -0.397 1.788 H11 A1ER0 48 A1ER0 H12 H12 H 0 1 N N N N N N -15.441 -32.898 -18.209 -3.796 0.917 -0.534 H12 A1ER0 49 A1ER0 H13 H13 H 0 1 N N N N N N -12.315 -30.952 -14.229 -0.171 1.545 0.156 H13 A1ER0 50 A1ER0 H14 H14 H 0 1 N N N N N N -15.171 -31.312 -16.448 2.108 2.282 -0.683 H14 A1ER0 51 A1ER0 H15 H15 H 0 1 N N N N N N -18.030 -31.595 -16.391 5.616 1.915 -0.781 H15 A1ER0 52 A1ER0 H16 H16 H 0 1 N N N N N N -19.086 -29.102 -18.799 6.253 4.515 -0.300 H16 A1ER0 53 A1ER0 H17 H17 H 0 1 N N N N N N -20.240 -29.717 -17.568 5.726 4.299 -1.986 H17 A1ER0 54 A1ER0 H18 H18 H 0 1 N N N N N N -19.750 -31.325 -19.222 5.428 6.568 -1.244 H18 A1ER0 55 A1ER0 H19 H19 H 0 1 N N N N N N -18.152 -31.267 -18.887 3.940 5.878 -1.515 H19 A1ER0 56 A1ER0 H21 H21 H 0 1 N N N N N N -13.882 -30.614 -12.422 1.367 -1.351 1.445 H21 A1ER0 57 A1ER0 H22 H22 H 0 1 N N N N N N -16.166 -29.929 -11.797 3.786 -1.658 1.774 H22 A1ER0 58 A1ER0 H23 H23 H 0 1 N N N N N N -19.573 -28.398 -12.470 5.510 -0.782 2.873 H23 A1ER0 59 A1ER0 H24 H24 H 0 1 N N N N N N -17.883 -28.386 -11.861 7.114 -0.130 2.459 H24 A1ER0 60 A1ER0 H25 H25 H 0 1 N N N N N N -18.251 -27.754 -13.502 5.752 0.978 2.752 H25 A1ER0 61 A1ER0 H26 H26 H 0 1 N N N N N N -20.321 -30.222 -13.705 5.763 -2.140 0.878 H26 A1ER0 62 A1ER0 H27 H27 H 0 1 N N N N N N -19.188 -31.568 -14.070 5.787 -1.356 -0.720 H27 A1ER0 63 A1ER0 H28 H28 H 0 1 N N N N N N -20.054 -32.377 -12.072 8.066 -0.493 -0.262 H28 A1ER0 64 A1ER0 H29 H29 H 0 1 N N N N N N -18.728 -31.366 -11.403 8.042 -1.277 1.336 H29 A1ER0 65 A1ER0 H31 H31 H 0 1 N N N N N N -21.240 -30.192 -9.261 8.263 -1.809 -2.245 H31 A1ER0 66 A1ER0 H32 H32 H 0 1 N N N N N N -20.657 -31.859 -9.588 8.141 -3.583 -2.152 H32 A1ER0 67 A1ER0 H33 H33 H 0 1 N N N N N N -19.485 -30.501 -9.491 6.708 -2.574 -1.839 H33 A1ER0 68 A1ER0 H34 H34 H 0 1 N N N N N N -22.715 -30.330 -11.098 9.802 -2.805 0.964 H34 A1ER0 69 A1ER0 H35 H35 H 0 1 N N N N N N -22.083 -30.724 -12.732 9.895 -3.714 -0.564 H35 A1ER0 70 A1ER0 H36 H36 H 0 1 N N N N N N -22.148 -31.994 -11.464 10.120 -1.948 -0.563 H36 A1ER0 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ER0 CAY OAX SING N N 1 A1ER0 OAX CAU SING N N 2 A1ER0 CAU CAV SING N N 3 A1ER0 CAU CAS SING N N 4 A1ER0 CAV OAW SING N N 5 A1ER0 OAR CAS SING N N 6 A1ER0 OAR CAQ SING N N 7 A1ER0 CAS CAT SING N N 8 A1ER0 OAW CAT SING N N 9 A1ER0 CAQ CAP SING N N 10 A1ER0 CAT CAP SING N N 11 A1ER0 CAP OAG SING N N 12 A1ER0 OAG C4 SING N N 13 A1ER0 CL5 C5 SING N N 14 A1ER0 N CA SING N N 15 A1ER0 CA C SING N N 16 A1ER0 C4 C5 DOUB Y N 17 A1ER0 C4 N3 SING Y N 18 A1ER0 C5 C6 SING Y N 19 A1ER0 C O DOUB N N 20 A1ER0 C NAZ SING N N 21 A1ER0 N3 C2 DOUB Y N 22 A1ER0 C6 N1 DOUB Y N 23 A1ER0 NAZ CAK SING N N 24 A1ER0 C2 N1 SING Y N 25 A1ER0 C2 NAH SING N N 26 A1ER0 CAJ CAK DOUB Y N 27 A1ER0 CAJ CAI SING Y N 28 A1ER0 CAK CAL SING Y N 29 A1ER0 NAH CAI SING N N 30 A1ER0 CAI CAN DOUB Y N 31 A1ER0 CAL NBA SING N N 32 A1ER0 CAL CAM DOUB Y N 33 A1ER0 CBF NBA SING N N 34 A1ER0 CBF CBH SING N N 35 A1ER0 NBA CBG SING N N 36 A1ER0 CAN CAM SING Y N 37 A1ER0 CBH NBI SING N N 38 A1ER0 CBJ NBI SING N N 39 A1ER0 NBI CBK SING N N 40 A1ER0 C6 H1 SING N N 41 A1ER0 CAY H2 SING N N 42 A1ER0 CAY H3 SING N N 43 A1ER0 CAY H4 SING N N 44 A1ER0 CAU H5 SING N N 45 A1ER0 CAV H6 SING N N 46 A1ER0 CAV H7 SING N N 47 A1ER0 CAT H8 SING N N 48 A1ER0 CAS H9 SING N N 49 A1ER0 CAQ H10 SING N N 50 A1ER0 CAQ H11 SING N N 51 A1ER0 CAP H12 SING N N 52 A1ER0 NAH H13 SING N N 53 A1ER0 CAJ H14 SING N N 54 A1ER0 NAZ H15 SING N N 55 A1ER0 CA H16 SING N N 56 A1ER0 CA H17 SING N N 57 A1ER0 N H18 SING N N 58 A1ER0 N H19 SING N N 59 A1ER0 CAN H21 SING N N 60 A1ER0 CAM H22 SING N N 61 A1ER0 CBG H23 SING N N 62 A1ER0 CBG H24 SING N N 63 A1ER0 CBG H25 SING N N 64 A1ER0 CBF H26 SING N N 65 A1ER0 CBF H27 SING N N 66 A1ER0 CBH H28 SING N N 67 A1ER0 CBH H29 SING N N 68 A1ER0 CBK H31 SING N N 69 A1ER0 CBK H32 SING N N 70 A1ER0 CBK H33 SING N N 71 A1ER0 CBJ H34 SING N N 72 A1ER0 CBJ H35 SING N N 73 A1ER0 CBJ H36 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ER0 InChI InChI 1.06 "InChI=1S/C24H34ClN7O5/c1-31(2)7-8-32(3)17-6-5-14(9-16(17)29-20(33)10-26)28-24-27-11-15(25)23(30-24)37-19-13-36-21-18(34-4)12-35-22(19)21/h5-6,9,11,18-19,21-22H,7-8,10,12-13,26H2,1-4H3,(H,29,33)(H,27,28,30)/t18-,19-,21-,22-/m1/s1" A1ER0 InChIKey InChI 1.06 MSCASMOGANVWIT-UGESXGAOSA-N A1ER0 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1CO[C@@H]2[C@@H](CO[C@H]12)Oc3nc(Nc4ccc(N(C)CCN(C)C)c(NC(=O)CN)c4)ncc3Cl" A1ER0 SMILES CACTVS 3.385 "CO[CH]1CO[CH]2[CH](CO[CH]12)Oc3nc(Nc4ccc(N(C)CCN(C)C)c(NC(=O)CN)c4)ncc3Cl" A1ER0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCN(C)c1ccc(cc1NC(=O)CN)Nc2ncc(c(n2)O[C@@H]3CO[C@H]4[C@@H]3OC[C@H]4OC)Cl" A1ER0 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCN(C)c1ccc(cc1NC(=O)CN)Nc2ncc(c(n2)OC3COC4C3OCC4OC)Cl" # _pdbx_chem_comp_identifier.comp_id A1ER0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[5-[[4-[[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-3-methoxy-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]furan-6-yl]oxy]-5-chloranyl-pyrimidin-2-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]-2-azanyl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ER0 "Create component" 2025-06-17 PDBC A1ER0 "Initial release" 2026-04-22 RCSB #