data_A1ER9 # _chem_comp.id A1ER9 _chem_comp.name "N-[5-[[4-[[(3R,3aR,6R,6aR)-3-methoxy-2,3,3a,5,6,6a-hexahydrofuro[3,2-b]furan-6-yl]oxy]-5-chloranyl-pyrimidin-2-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]-1-methyl-pyrazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H35 Cl N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-24 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.070 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ER9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VGR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ER9 C4 C1 C 0 1 Y N N N N N -12.713 -33.366 -17.890 -3.573 -1.071 -0.867 C4 A1ER9 1 A1ER9 C5 C2 C 0 1 Y N N N N N -11.413 -33.917 -17.744 -3.252 -2.163 -1.674 C5 A1ER9 2 A1ER9 C6 C3 C 0 1 Y N N N N N -10.645 -33.545 -16.658 -1.919 -2.492 -1.840 C6 A1ER9 3 A1ER9 N1 N1 N 0 1 Y N N N N N -11.216 -32.684 -15.772 -0.993 -1.766 -1.232 N1 A1ER9 4 A1ER9 N3 N2 N 0 1 Y N N N N N -13.184 -32.518 -16.948 -2.593 -0.388 -0.288 N3 A1ER9 5 A1ER9 CBO C4 C 0 1 N N N N N N -14.497 -31.223 -24.208 -10.414 2.046 2.191 CBO A1ER9 6 A1ER9 OBN O1 O 0 1 N N N N N N -15.479 -31.275 -23.189 -9.073 1.554 2.164 OBN A1ER9 7 A1ER9 CBM C5 C 0 1 N N R N N N -14.982 -31.026 -21.839 -8.421 1.711 0.902 CBM A1ER9 8 A1ER9 CBL C6 C 0 1 N N N N N N -13.435 -31.519 -21.633 -8.625 0.460 0.023 CBL A1ER9 9 A1ER9 OBK O2 O 0 1 N N N N N N -13.340 -31.524 -20.068 -7.389 0.193 -0.645 OBK A1ER9 10 A1ER9 CBG C7 C 0 1 N N R N N N -14.614 -31.760 -19.599 -6.399 1.160 -0.276 CBG A1ER9 11 A1ER9 CBH C8 C 0 1 N N R N N N -15.639 -31.744 -20.930 -6.883 1.758 1.080 CBH A1ER9 12 A1ER9 OBI O3 O 0 1 N N N N N N -15.750 -33.040 -21.267 -6.501 0.804 2.078 OBI A1ER9 13 A1ER9 CBJ C9 C 0 1 N N N N N N -15.769 -33.833 -19.916 -5.445 -0.032 1.596 CBJ A1ER9 14 A1ER9 CBF C10 C 0 1 N N R N N N -14.751 -32.966 -19.025 -5.110 0.419 0.160 CBF A1ER9 15 A1ER9 OAH O4 O 0 1 N N N N N N -13.512 -33.741 -19.014 -4.866 -0.711 -0.681 OAH A1ER9 16 A1ER9 CL5 CL1 CL 0 0 N N N N N N -10.790 -35.019 -18.943 -4.498 -3.088 -2.452 CL5 A1ER9 17 A1ER9 C2 C11 C 0 1 Y N N N N N -12.442 -32.201 -15.922 -1.328 -0.734 -0.471 C2 A1ER9 18 A1ER9 NAI N3 N 0 1 N N N N N N -12.908 -31.268 -14.925 -0.330 0.001 0.149 NAI A1ER9 19 A1ER9 CAJ C12 C 0 1 Y N N N N N -14.243 -30.814 -14.762 1.004 -0.417 0.061 CAJ A1ER9 20 A1ER9 CAO C13 C 0 1 Y N N N N N -15.140 -30.576 -15.818 2.024 0.524 0.021 CAO A1ER9 21 A1ER9 CAK C14 C 0 1 Y N N N N N -14.615 -30.592 -13.452 1.306 -1.772 0.021 CAK A1ER9 22 A1ER9 CAL C15 C 0 1 Y N N N N N -15.926 -30.126 -13.157 2.621 -2.187 -0.064 CAL A1ER9 23 A1ER9 CAM C16 C 0 1 Y N N N N N -16.836 -29.888 -14.178 3.644 -1.252 -0.110 CAM A1ER9 24 A1ER9 NAY N4 N 0 1 N N N N N N -18.176 -29.432 -13.767 4.977 -1.674 -0.196 NAY A1ER9 25 A1ER9 CBC C17 C 0 1 N N N N N N -18.334 -28.192 -13.077 5.224 -2.387 -1.457 CBC A1ER9 26 A1ER9 CAZ C18 C 0 1 N N N N N N -19.321 -30.279 -14.019 5.342 -2.506 0.959 CAZ A1ER9 27 A1ER9 CBA C19 C 0 1 N N N N N N -20.261 -29.655 -15.091 6.854 -2.739 0.962 CBA A1ER9 28 A1ER9 NBB N5 N 0 1 N N N N N N -21.595 -30.185 -14.965 7.219 -3.570 2.117 NBB A1ER9 29 A1ER9 CBE C20 C 0 1 N N N N N N -21.564 -31.633 -15.075 6.657 -4.922 1.992 CBE A1ER9 30 A1ER9 CBD C21 C 0 1 N N N N N N -22.157 -29.792 -13.686 8.677 -3.621 2.290 CBD A1ER9 31 A1ER9 CAN C22 C 0 1 Y N N N N N -16.479 -30.113 -15.507 3.344 0.110 -0.065 CAN A1ER9 32 A1ER9 NAP N6 N 0 1 N N N N N N -17.432 -29.827 -16.527 4.376 1.057 -0.106 NAP A1ER9 33 A1ER9 CAQ C23 C 0 1 N N N N N N -17.798 -30.704 -17.585 4.108 2.329 -0.461 CAQ A1ER9 34 A1ER9 OAW O5 O 0 1 N N N N N N -17.292 -31.793 -17.698 2.993 2.634 -0.838 OAW A1ER9 35 A1ER9 CAR C24 C 0 1 Y N N N N N -18.859 -30.229 -18.615 5.168 3.352 -0.394 CAR A1ER9 36 A1ER9 CAS C25 C 0 1 Y N N N N N -19.493 -31.010 -19.647 5.042 4.686 -0.724 CAS A1ER9 37 A1ER9 CAV C26 C 0 1 Y N N N N N -19.421 -28.903 -18.765 6.502 3.150 0.026 CAV A1ER9 38 A1ER9 NAU N7 N 0 1 Y N N N N N -20.300 -28.955 -19.792 7.128 4.292 -0.054 NAU A1ER9 39 A1ER9 NAT N8 N 0 1 Y N N N N N -20.337 -30.169 -20.300 6.236 5.265 -0.520 NAT A1ER9 40 A1ER9 CAX C27 C 0 1 N N N N N N -21.175 -30.564 -21.416 6.553 6.677 -0.748 CAX A1ER9 41 A1ER9 H1 H1 H 0 1 N N N N N N -9.641 -33.919 -16.519 -1.636 -3.331 -2.457 H1 A1ER9 42 A1ER9 H2 H2 H 0 1 N N N N N N -14.968 -31.422 -25.182 -10.415 3.111 1.959 H2 A1ER9 43 A1ER9 H3 H3 H 0 1 N N N N N N -14.035 -30.225 -24.222 -11.012 1.512 1.452 H3 A1ER9 44 A1ER9 H4 H4 H 0 1 N N N N N N -13.725 -31.981 -24.012 -10.838 1.890 3.183 H4 A1ER9 45 A1ER9 H5 H5 H 0 1 N N N N N N -15.022 -29.949 -21.618 -8.781 2.604 0.392 H5 A1ER9 46 A1ER9 H6 H6 H 0 1 N N N N N N -13.270 -32.522 -22.053 -8.899 -0.390 0.647 H6 A1ER9 47 A1ER9 H7 H7 H 0 1 N N N N N N -12.721 -30.812 -22.081 -9.409 0.648 -0.711 H7 A1ER9 48 A1ER9 H8 H8 H 0 1 N N N N N N -14.943 -30.953 -18.928 -6.223 1.906 -1.051 H8 A1ER9 49 A1ER9 H9 H9 H 0 1 N N N N N N -16.595 -31.293 -20.625 -6.504 2.762 1.269 H9 A1ER9 50 A1ER9 H10 H10 H 0 1 N N N N N N -16.776 -33.850 -19.474 -4.567 0.079 2.233 H10 A1ER9 51 A1ER9 H11 H11 H 0 1 N N N N N N -15.409 -34.864 -20.049 -5.770 -1.072 1.591 H11 A1ER9 52 A1ER9 H12 H12 H 0 1 N N N N N N -15.161 -32.893 -18.007 -4.256 1.095 0.157 H12 A1ER9 53 A1ER9 H13 H13 H 0 1 N N N N N N -12.226 -30.907 -14.289 -0.555 0.804 0.643 H13 A1ER9 54 A1ER9 H14 H14 H 0 1 N N N N N N -14.838 -30.735 -16.843 1.789 1.577 0.056 H14 A1ER9 55 A1ER9 H15 H15 H 0 1 N N N N N N -13.912 -30.772 -12.652 0.511 -2.502 0.057 H15 A1ER9 56 A1ER9 H16 H16 H 0 1 N N N N N N -16.216 -29.956 -12.131 2.853 -3.242 -0.095 H16 A1ER9 57 A1ER9 H17 H17 H 0 1 N N N N N N -19.399 -28.027 -12.857 5.012 -1.725 -2.296 H17 A1ER9 58 A1ER9 H18 H18 H 0 1 N N N N N N -17.766 -28.221 -12.136 6.266 -2.704 -1.497 H18 A1ER9 59 A1ER9 H19 H19 H 0 1 N N N N N N -17.958 -27.372 -13.707 4.576 -3.262 -1.512 H19 A1ER9 60 A1ER9 H20 H20 H 0 1 N N N N N N -19.883 -30.410 -13.082 5.051 -1.998 1.878 H20 A1ER9 61 A1ER9 H21 H21 H 0 1 N N N N N N -18.970 -31.258 -14.376 4.826 -3.464 0.894 H21 A1ER9 62 A1ER9 H22 H22 H 0 1 N N N N N N -19.872 -29.889 -16.093 7.145 -3.247 0.043 H22 A1ER9 63 A1ER9 H23 H23 H 0 1 N N N N N N -20.291 -28.564 -14.955 7.370 -1.781 1.027 H23 A1ER9 64 A1ER9 H25 H25 H 0 1 N N N N N N -22.585 -32.031 -14.978 7.041 -5.392 1.087 H25 A1ER9 65 A1ER9 H26 H26 H 0 1 N N N N N N -21.151 -31.917 -16.054 6.942 -5.516 2.860 H26 A1ER9 66 A1ER9 H27 H27 H 0 1 N N N N N N -20.932 -32.048 -14.276 5.570 -4.859 1.935 H27 A1ER9 67 A1ER9 H28 H28 H 0 1 N N N N N N -23.175 -30.198 -13.592 9.058 -2.612 2.451 H28 A1ER9 68 A1ER9 H29 H29 H 0 1 N N N N N N -21.529 -30.186 -12.873 8.919 -4.242 3.152 H29 A1ER9 69 A1ER9 H30 H30 H 0 1 N N N N N N -22.192 -28.694 -13.623 9.134 -4.044 1.396 H30 A1ER9 70 A1ER9 H31 H31 H 0 1 N N N N N N -17.881 -28.934 -16.496 5.282 0.797 0.121 H31 A1ER9 71 A1ER9 H32 H32 H 0 1 N N N N N N -19.330 -32.056 -19.859 4.147 5.175 -1.080 H32 A1ER9 72 A1ER9 H33 H33 H 0 1 N N N N N N -19.183 -28.035 -18.168 6.929 2.215 0.357 H33 A1ER9 73 A1ER9 H34 H34 H 0 1 N N N N N N -21.761 -29.699 -21.759 6.901 6.811 -1.772 H34 A1ER9 74 A1ER9 H35 H35 H 0 1 N N N N N N -20.542 -30.928 -22.239 5.660 7.280 -0.587 H35 A1ER9 75 A1ER9 H36 H36 H 0 1 N N N N N N -21.857 -31.366 -21.096 7.333 6.991 -0.055 H36 A1ER9 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ER9 CBO OBN SING N N 1 A1ER9 OBN CBM SING N N 2 A1ER9 CBM CBL SING N N 3 A1ER9 CBM CBH SING N N 4 A1ER9 CBL OBK SING N N 5 A1ER9 CAX NAT SING N N 6 A1ER9 OBI CBH SING N N 7 A1ER9 OBI CBJ SING N N 8 A1ER9 CBH CBG SING N N 9 A1ER9 NAT NAU SING Y N 10 A1ER9 NAT CAS SING Y N 11 A1ER9 OBK CBG SING N N 12 A1ER9 CBJ CBF SING N N 13 A1ER9 NAU CAV DOUB Y N 14 A1ER9 CAS CAR DOUB Y N 15 A1ER9 CBG CBF SING N N 16 A1ER9 CBF OAH SING N N 17 A1ER9 OAH C4 SING N N 18 A1ER9 CL5 C5 SING N N 19 A1ER9 CAV CAR SING Y N 20 A1ER9 CAR CAQ SING N N 21 A1ER9 C4 C5 DOUB Y N 22 A1ER9 C4 N3 SING Y N 23 A1ER9 C5 C6 SING Y N 24 A1ER9 OAW CAQ DOUB N N 25 A1ER9 CAQ NAP SING N N 26 A1ER9 N3 C2 DOUB Y N 27 A1ER9 C6 N1 DOUB Y N 28 A1ER9 NAP CAN SING N N 29 A1ER9 C2 N1 SING Y N 30 A1ER9 C2 NAI SING N N 31 A1ER9 CAO CAN DOUB Y N 32 A1ER9 CAO CAJ SING Y N 33 A1ER9 CAN CAM SING Y N 34 A1ER9 CBA NBB SING N N 35 A1ER9 CBA CAZ SING N N 36 A1ER9 CBE NBB SING N N 37 A1ER9 NBB CBD SING N N 38 A1ER9 NAI CAJ SING N N 39 A1ER9 CAJ CAK DOUB Y N 40 A1ER9 CAM NAY SING N N 41 A1ER9 CAM CAL DOUB Y N 42 A1ER9 CAZ NAY SING N N 43 A1ER9 NAY CBC SING N N 44 A1ER9 CAK CAL SING Y N 45 A1ER9 C6 H1 SING N N 46 A1ER9 CBO H2 SING N N 47 A1ER9 CBO H3 SING N N 48 A1ER9 CBO H4 SING N N 49 A1ER9 CBM H5 SING N N 50 A1ER9 CBL H6 SING N N 51 A1ER9 CBL H7 SING N N 52 A1ER9 CBG H8 SING N N 53 A1ER9 CBH H9 SING N N 54 A1ER9 CBJ H10 SING N N 55 A1ER9 CBJ H11 SING N N 56 A1ER9 CBF H12 SING N N 57 A1ER9 NAI H13 SING N N 58 A1ER9 CAO H14 SING N N 59 A1ER9 CAK H15 SING N N 60 A1ER9 CAL H16 SING N N 61 A1ER9 CBC H17 SING N N 62 A1ER9 CBC H18 SING N N 63 A1ER9 CBC H19 SING N N 64 A1ER9 CAZ H20 SING N N 65 A1ER9 CAZ H21 SING N N 66 A1ER9 CBA H22 SING N N 67 A1ER9 CBA H23 SING N N 68 A1ER9 CBE H25 SING N N 69 A1ER9 CBE H26 SING N N 70 A1ER9 CBE H27 SING N N 71 A1ER9 CBD H28 SING N N 72 A1ER9 CBD H29 SING N N 73 A1ER9 CBD H30 SING N N 74 A1ER9 NAP H31 SING N N 75 A1ER9 CAS H32 SING N N 76 A1ER9 CAV H33 SING N N 77 A1ER9 CAX H34 SING N N 78 A1ER9 CAX H35 SING N N 79 A1ER9 CAX H36 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ER9 InChI InChI 1.06 "InChI=1S/C27H35ClN8O5/c1-34(2)8-9-35(3)20-7-6-17(10-19(20)32-25(37)16-11-30-36(4)13-16)31-27-29-12-18(28)26(33-27)41-22-15-40-23-21(38-5)14-39-24(22)23/h6-7,10-13,21-24H,8-9,14-15H2,1-5H3,(H,32,37)(H,29,31,33)/t21-,22-,23-,24-/m1/s1" A1ER9 InChIKey InChI 1.06 KIFJZVSMYMSPGK-MOUTVQLLSA-N A1ER9 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1CO[C@@H]2[C@@H](CO[C@H]12)Oc3nc(Nc4ccc(N(C)CCN(C)C)c(NC(=O)c5cnn(C)c5)c4)ncc3Cl" A1ER9 SMILES CACTVS 3.385 "CO[CH]1CO[CH]2[CH](CO[CH]12)Oc3nc(Nc4ccc(N(C)CCN(C)C)c(NC(=O)c5cnn(C)c5)c4)ncc3Cl" A1ER9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)C(=O)Nc2cc(ccc2N(C)CCN(C)C)Nc3ncc(c(n3)O[C@@H]4CO[C@H]5[C@@H]4OC[C@H]5OC)Cl" A1ER9 SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc(cn1)C(=O)Nc2cc(ccc2N(C)CCN(C)C)Nc3ncc(c(n3)OC4COC5C4OCC5OC)Cl" # _pdbx_chem_comp_identifier.comp_id A1ER9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[5-[[4-[[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-3-methoxy-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]furan-6-yl]oxy]-5-chloranyl-pyrimidin-2-yl]amino]-2-[2-(dimethylamino)ethyl-methyl-amino]phenyl]-1-methyl-pyrazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ER9 "Create component" 2025-06-24 PDBC A1ER9 "Initial release" 2026-04-22 RCSB #