data_A1ES2 # _chem_comp.id A1ES2 _chem_comp.name "8-[3-[[(2~{S})-3-(1~{H}-indol-4-yloxy)-2-oxidanyl-propyl]amino]propyl]-8-azaspiro[4.5]decane-7,9-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H31 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-07 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.510 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ES2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VMY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ES2 C1 C1 C 0 1 N N S N N N 149.140 153.716 181.394 -2.451 0.077 -0.056 C1 A1ES2 1 A1ES2 C10 C2 C 0 1 Y N N N N N 144.091 156.598 184.075 -8.524 -2.606 0.128 C10 A1ES2 2 A1ES2 C11 C3 C 0 1 N N N N N N 149.594 154.547 182.589 -1.371 1.157 0.033 C11 A1ES2 3 A1ES2 C12 C4 C 0 1 N N N N N N 151.430 155.833 183.533 1.020 1.535 0.080 C12 A1ES2 4 A1ES2 C13 C5 C 0 1 N N N N N N 152.886 155.839 183.968 2.384 0.842 0.040 C13 A1ES2 5 A1ES2 C14 C6 C 0 1 N N N N N N 153.106 156.542 185.285 3.493 1.893 0.127 C14 A1ES2 6 A1ES2 C15 C7 C 0 1 N N N N N N 151.377 155.983 186.953 5.379 1.027 -1.104 C15 A1ES2 7 A1ES2 C16 C8 C 0 1 N N N N N N 150.567 154.772 187.298 6.729 0.367 -1.213 C16 A1ES2 8 A1ES2 C17 C9 C 0 1 N N N N N N 151.391 153.664 187.969 6.921 -0.584 -0.033 C17 A1ES2 9 A1ES2 C18 C10 C 0 1 N N N N N N 151.614 153.965 189.473 5.938 -1.758 -0.135 C18 A1ES2 10 A1ES2 C19 C11 C 0 1 N N N N N N 150.336 153.488 190.161 6.794 -3.039 -0.229 C19 A1ES2 11 A1ES2 C2 C12 C 0 1 N N N N N N 148.014 154.378 180.636 -3.833 0.734 -0.019 C2 A1ES2 12 A1ES2 C20 C13 C 0 1 N N N N N N 149.600 152.603 189.171 8.145 -2.642 0.416 C20 A1ES2 13 A1ES2 C21 C14 C 0 1 N N N N N N 150.579 152.349 188.038 8.339 -1.182 -0.066 C21 A1ES2 14 A1ES2 C22 C15 C 0 1 N N N N N N 152.727 153.442 187.246 6.705 0.172 1.277 C22 A1ES2 15 A1ES2 C23 C16 C 0 1 N N N N N N 153.432 154.717 186.898 5.356 0.842 1.245 C23 A1ES2 16 A1ES2 C3 C17 C 0 1 Y N N N N N 145.891 155.291 181.222 -6.133 0.138 0.052 C3 A1ES2 17 A1ES2 C4 C18 C 0 1 Y N N N N N 145.409 155.182 179.939 -6.428 1.488 0.054 C4 A1ES2 18 A1ES2 C5 C19 C 0 1 Y N N N N N 144.106 155.602 179.648 -7.748 1.916 0.091 C5 A1ES2 19 A1ES2 C6 C20 C 0 1 Y N N N N N 143.281 156.130 180.602 -8.782 1.007 0.125 C6 A1ES2 20 A1ES2 C7 C21 C 0 1 Y N N N N N 143.775 156.232 181.897 -8.509 -0.359 0.124 C7 A1ES2 21 A1ES2 C8 C22 C 0 1 Y N N N N N 145.079 155.816 182.222 -7.175 -0.797 0.086 C8 A1ES2 22 A1ES2 C9 C23 C 0 1 Y N N N N N 145.252 156.057 183.619 -7.228 -2.261 0.094 C9 A1ES2 23 A1ES2 N1 N1 N 0 1 Y N N N N N 143.194 156.699 183.048 -9.306 -1.482 0.145 N1 A1ES2 24 A1ES2 N2 N2 N 0 1 N N N N N N 151.047 154.684 182.712 -0.044 0.527 -0.004 N2 A1ES2 25 A1ES2 N3 N3 N 0 1 N N N N N N 152.628 155.730 186.434 4.798 1.230 0.088 N3 A1ES2 26 A1ES2 O1 O1 O 0 1 N N N N N N 150.194 153.512 180.473 -2.301 -0.647 -1.279 O1 A1ES2 27 A1ES2 O2 O2 O 0 1 N N N N N N 147.137 154.922 181.620 -4.840 -0.279 0.015 O2 A1ES2 28 A1ES2 O3 O3 O 0 1 N N N N N N 154.631 154.874 187.022 4.765 1.039 2.285 O3 A1ES2 29 A1ES2 O4 O4 O 0 1 N N N N N N 150.977 157.120 187.107 4.809 1.385 -2.112 O4 A1ES2 30 A1ES2 H2 H1 H 0 1 N N N N N N 148.782 152.745 181.767 -2.351 -0.607 0.786 H2 A1ES2 31 A1ES2 H9 H2 H 0 1 N N N N N N 143.905 156.902 185.095 -8.896 -3.620 0.138 H9 A1ES2 32 A1ES2 H11 H3 H 0 1 N N N N N N 149.160 155.553 182.493 -1.471 1.842 -0.809 H11 A1ES2 33 A1ES2 H12 H4 H 0 1 N N N N N N 149.214 154.070 183.504 -1.485 1.709 0.966 H12 A1ES2 34 A1ES2 H14 H5 H 0 1 N N N N N N 151.241 156.748 182.953 0.922 2.090 1.013 H14 A1ES2 35 A1ES2 H15 H6 H 0 1 N N N N N N 150.802 155.835 184.436 0.937 2.223 -0.762 H15 A1ES2 36 A1ES2 H16 H7 H 0 1 N N N N N N 153.227 154.798 184.065 2.467 0.155 0.882 H16 A1ES2 37 A1ES2 H17 H8 H 0 1 N N N N N N 153.480 156.349 183.195 2.482 0.288 -0.893 H17 A1ES2 38 A1ES2 H18 H9 H 0 1 N N N N N N 154.182 156.735 185.409 3.409 2.580 -0.715 H18 A1ES2 39 A1ES2 H19 H10 H 0 1 N N N N N N 152.561 157.497 185.273 3.395 2.448 1.060 H19 A1ES2 40 A1ES2 H20 H11 H 0 1 N N N N N N 149.762 155.074 187.985 6.786 -0.193 -2.146 H20 A1ES2 41 A1ES2 H21 H12 H 0 1 N N N N N N 150.128 154.370 186.373 7.509 1.129 -1.197 H21 A1ES2 42 A1ES2 H22 H13 H 0 1 N N N N N N 152.487 153.414 189.853 5.306 -1.795 0.753 H22 A1ES2 43 A1ES2 H23 H14 H 0 1 N N N N N N 151.762 155.043 189.635 5.322 -1.653 -1.028 H23 A1ES2 44 A1ES2 H24 H15 H 0 1 N N N N N N 150.586 152.915 191.066 6.328 -3.851 0.329 H24 A1ES2 45 A1ES2 H25 H16 H 0 1 N N N N N N 149.710 154.350 190.434 6.938 -3.326 -1.271 H25 A1ES2 46 A1ES2 H3 H17 H 0 1 N N N N N N 148.407 155.178 179.992 -3.914 1.358 0.871 H3 A1ES2 47 A1ES2 H4 H18 H 0 1 N N N N N N 147.483 153.638 180.019 -3.967 1.350 -0.908 H4 A1ES2 48 A1ES2 H26 H19 H 0 1 N N N N N N 149.310 151.655 189.647 8.081 -2.684 1.503 H26 A1ES2 49 A1ES2 H27 H20 H 0 1 N N N N N N 148.702 153.114 188.794 8.950 -3.280 0.050 H27 A1ES2 50 A1ES2 H28 H21 H 0 1 N N N N N N 151.232 151.494 188.266 8.738 -1.164 -1.080 H28 A1ES2 51 A1ES2 H29 H22 H 0 1 N N N N N N 150.048 152.163 187.093 8.997 -0.640 0.613 H29 A1ES2 52 A1ES2 H30 H23 H 0 1 N N N N N N 153.383 152.848 187.899 6.744 -0.528 2.112 H30 A1ES2 53 A1ES2 H31 H24 H 0 1 N N N N N N 152.533 152.886 186.317 7.483 0.925 1.395 H31 A1ES2 54 A1ES2 H5 H25 H 0 1 N N N N N N 146.034 154.774 179.158 -5.628 2.213 0.029 H5 A1ES2 55 A1ES2 H6 H26 H 0 1 N N N N N N 143.740 155.506 178.636 -7.966 2.974 0.093 H6 A1ES2 56 A1ES2 H7 H27 H 0 1 N N N N N N 142.281 156.456 180.358 -9.804 1.353 0.154 H7 A1ES2 57 A1ES2 H8 H28 H 0 1 N N N N N N 146.137 155.849 184.202 -6.384 -2.934 0.076 H8 A1ES2 58 A1ES2 H10 H29 H 0 1 N N N N N N 142.263 157.056 183.124 -10.275 -1.477 0.166 H10 A1ES2 59 A1ES2 H13 H30 H 0 1 N N N N N N 151.414 153.853 183.131 0.050 -0.160 0.729 H13 A1ES2 60 A1ES2 H1 H32 H 0 1 N N N N N N 150.925 153.095 180.915 -2.379 -0.099 -2.073 H1 A1ES2 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ES2 O1 C1 SING N N 1 A1ES2 C1 C2 SING N N 2 A1ES2 C2 O2 SING N N 3 A1ES2 O2 C3 SING N N 4 A1ES2 C3 C4 DOUB Y N 5 A1ES2 C4 C5 SING Y N 6 A1ES2 C5 C6 DOUB Y N 7 A1ES2 C6 C7 SING Y N 8 A1ES2 C7 C8 DOUB Y N 9 A1ES2 C8 C9 SING Y N 10 A1ES2 C9 C10 DOUB Y N 11 A1ES2 C10 N1 SING Y N 12 A1ES2 C1 C11 SING N N 13 A1ES2 C11 N2 SING N N 14 A1ES2 N2 C12 SING N N 15 A1ES2 C12 C13 SING N N 16 A1ES2 C13 C14 SING N N 17 A1ES2 C14 N3 SING N N 18 A1ES2 N3 C15 SING N N 19 A1ES2 C15 C16 SING N N 20 A1ES2 C16 C17 SING N N 21 A1ES2 C17 C18 SING N N 22 A1ES2 C18 C19 SING N N 23 A1ES2 C19 C20 SING N N 24 A1ES2 C20 C21 SING N N 25 A1ES2 C17 C22 SING N N 26 A1ES2 C22 C23 SING N N 27 A1ES2 C23 O3 DOUB N N 28 A1ES2 C15 O4 DOUB N N 29 A1ES2 C3 C8 SING Y N 30 A1ES2 C7 N1 SING Y N 31 A1ES2 N3 C23 SING N N 32 A1ES2 C17 C21 SING N N 33 A1ES2 C1 H2 SING N N 34 A1ES2 C10 H9 SING N N 35 A1ES2 C11 H11 SING N N 36 A1ES2 C11 H12 SING N N 37 A1ES2 C12 H14 SING N N 38 A1ES2 C12 H15 SING N N 39 A1ES2 C13 H16 SING N N 40 A1ES2 C13 H17 SING N N 41 A1ES2 C14 H18 SING N N 42 A1ES2 C14 H19 SING N N 43 A1ES2 C16 H20 SING N N 44 A1ES2 C16 H21 SING N N 45 A1ES2 C18 H22 SING N N 46 A1ES2 C18 H23 SING N N 47 A1ES2 C19 H24 SING N N 48 A1ES2 C19 H25 SING N N 49 A1ES2 C2 H3 SING N N 50 A1ES2 C2 H4 SING N N 51 A1ES2 C20 H26 SING N N 52 A1ES2 C20 H27 SING N N 53 A1ES2 C21 H28 SING N N 54 A1ES2 C21 H29 SING N N 55 A1ES2 C22 H30 SING N N 56 A1ES2 C22 H31 SING N N 57 A1ES2 C4 H5 SING N N 58 A1ES2 C5 H6 SING N N 59 A1ES2 C6 H7 SING N N 60 A1ES2 C9 H8 SING N N 61 A1ES2 N1 H10 SING N N 62 A1ES2 N2 H13 SING N N 63 A1ES2 O1 H1 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ES2 InChI InChI 1.06 "InChI=1S/C23H31N3O4/c27-17(16-30-20-6-3-5-19-18(20)7-11-25-19)15-24-10-4-12-26-21(28)13-23(14-22(26)29)8-1-2-9-23/h3,5-7,11,17,24-25,27H,1-2,4,8-10,12-16H2/t17-/m0/s1" A1ES2 InChIKey InChI 1.06 KVCDXJUCIQSGFP-KRWDZBQOSA-N A1ES2 SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CNCCCN1C(=O)CC2(CCCC2)CC1=O)COc3cccc4[nH]ccc34" A1ES2 SMILES CACTVS 3.385 "O[CH](CNCCCN1C(=O)CC2(CCCC2)CC1=O)COc3cccc4[nH]ccc34" A1ES2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc[nH]2)c(c1)OC[C@H](CNCCCN3C(=O)CC4(CCCC4)CC3=O)O" A1ES2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc[nH]2)c(c1)OCC(CNCCCN3C(=O)CC4(CCCC4)CC3=O)O" # _pdbx_chem_comp_identifier.comp_id A1ES2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-[3-[[(2~{S})-3-(1~{H}-indol-4-yloxy)-2-oxidanyl-propyl]amino]propyl]-8-azaspiro[4.5]decane-7,9-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ES2 "Create component" 2025-07-07 PDBC A1ES2 "Initial release" 2025-11-12 RCSB #