data_A1ESA # _chem_comp.id A1ESA _chem_comp.name Gepirone _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H29 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-24 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ESA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VJ5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ESA C1 C1 C 0 1 N N N N N N 150.063 153.167 186.586 8.332 0.005 -0.609 C1 A1ESA 1 A1ESA C10 C2 C 0 1 N N N N N N 145.002 153.908 182.017 -0.582 -0.764 -0.867 C10 A1ESA 2 A1ESA C11 C3 C 0 1 N N N N N N 142.885 154.997 181.851 -2.890 -1.370 -1.277 C11 A1ESA 3 A1ESA C12 C4 C 0 1 N N N N N N 141.828 155.526 180.915 -4.306 -1.304 -0.698 C12 A1ESA 4 A1ESA C13 C5 C 0 1 N N N N N N 142.298 153.596 179.454 -3.779 0.814 0.348 C13 A1ESA 5 A1ESA C14 C6 C 0 1 N N N N N N 143.309 153.144 180.476 -2.364 0.748 -0.230 C14 A1ESA 6 A1ESA C15 C7 C 0 1 Y N N N N N 139.967 154.344 179.807 -6.008 0.201 -0.090 C15 A1ESA 7 A1ESA C16 C8 C 0 1 Y N N N N N 138.319 153.639 178.431 -7.779 1.531 0.535 C16 A1ESA 8 A1ESA C17 C9 C 0 1 Y N N N N N 137.371 154.147 179.281 -8.533 0.393 0.779 C17 A1ESA 9 A1ESA C18 C10 C 0 1 Y N N N N N 137.830 154.766 180.415 -7.950 -0.846 0.563 C18 A1ESA 10 A1ESA C19 C11 C 0 1 N N N N N N 151.945 154.510 187.524 7.028 0.768 1.384 C19 A1ESA 11 A1ESA C2 C12 C 0 1 N N N N N N 150.734 154.540 186.593 6.930 0.157 -0.015 C2 A1ESA 12 A1ESA C3 C13 C 0 1 N N N N N N 151.165 154.913 185.176 6.085 1.065 -0.915 C3 A1ESA 13 A1ESA C4 C14 C 0 1 N N N N N N 150.028 155.169 184.227 4.677 1.115 -0.385 C4 A1ESA 14 A1ESA C5 C15 C 0 1 N N N N N N 148.590 155.825 186.126 4.836 -1.041 0.543 C5 A1ESA 15 A1ESA C6 C16 C 0 1 N N N N N N 149.741 155.599 187.065 6.253 -1.216 0.065 C6 A1ESA 16 A1ESA C7 C17 C 0 1 N N N N N N 147.739 155.963 183.829 2.770 0.188 0.772 C7 A1ESA 17 A1ESA C8 C18 C 0 1 N N N N N N 146.933 154.742 183.447 1.814 -0.343 -0.299 C8 A1ESA 18 A1ESA C9 C19 C 0 1 N N N N N N 145.783 155.108 182.539 0.373 -0.233 0.204 C9 A1ESA 19 A1ESA N1 N1 N 0 1 N N N N N N 148.830 155.641 184.765 4.149 0.083 0.291 N1 A1ESA 20 A1ESA N2 N2 N 0 1 N N N N N N 143.912 154.293 181.115 -1.965 -0.658 -0.384 N2 A1ESA 21 A1ESA N3 N3 N 0 1 N N N N N N 141.300 154.463 180.068 -4.704 0.102 -0.545 N3 A1ESA 22 A1ESA N4 N4 N 0 1 Y N N N N N 139.630 153.722 178.667 -6.535 1.401 0.106 N4 A1ESA 23 A1ESA N5 N5 N 0 1 Y N N N N N 139.127 154.886 180.703 -6.701 -0.906 0.134 N5 A1ESA 24 A1ESA O1 O1 O 0 1 N N N N N N 150.132 154.979 183.029 4.007 2.108 -0.571 O1 A1ESA 25 A1ESA O2 O2 O 0 1 N N N N N N 147.485 156.157 186.521 4.305 -1.935 1.168 O2 A1ESA 26 A1ESA H1 H1 H 0 1 N N N N N N 149.755 152.904 187.609 8.804 0.985 -0.681 H1 A1ESA 27 A1ESA H2 H2 H 0 1 N N N N N N 149.179 153.195 185.932 8.930 -0.641 0.033 H2 A1ESA 28 A1ESA H3 H3 H 0 1 N N N N N N 150.772 152.414 186.212 8.259 -0.437 -1.603 H3 A1ESA 29 A1ESA H14 H4 H 0 1 N N N N N N 145.693 153.248 181.473 -0.469 -0.176 -1.778 H14 A1ESA 30 A1ESA H15 H5 H 0 1 N N N N N N 144.575 153.366 182.874 -0.349 -1.808 -1.077 H15 A1ESA 31 A1ESA H16 H6 H 0 1 N N N N N N 142.419 154.307 182.570 -2.582 -2.412 -1.365 H16 A1ESA 32 A1ESA H17 H7 H 0 1 N N N N N N 143.341 155.838 182.393 -2.878 -0.903 -2.262 H17 A1ESA 33 A1ESA H18 H8 H 0 1 N N N N N N 141.006 155.956 181.507 -4.998 -1.807 -1.374 H18 A1ESA 34 A1ESA H19 H9 H 0 1 N N N N N N 142.269 156.307 180.279 -4.325 -1.796 0.274 H19 A1ESA 35 A1ESA H20 H10 H 0 1 N N N N N N 141.797 152.715 179.026 -3.792 0.346 1.333 H20 A1ESA 36 A1ESA H21 H11 H 0 1 N N N N N N 142.814 154.148 178.655 -4.088 1.855 0.436 H21 A1ESA 37 A1ESA H22 H12 H 0 1 N N N N N N 142.808 152.526 181.235 -2.345 1.239 -1.203 H22 A1ESA 38 A1ESA H23 H13 H 0 1 N N N N N N 144.091 152.552 179.978 -1.671 1.251 0.445 H23 A1ESA 39 A1ESA H24 H14 H 0 1 N N N N N N 137.989 153.148 177.527 -8.203 2.511 0.693 H24 A1ESA 40 A1ESA H25 H15 H 0 1 N N N N N N 136.315 154.064 179.068 -9.551 0.470 1.130 H25 A1ESA 41 A1ESA H26 H16 H 0 1 N N N N N N 137.109 155.175 181.107 -8.510 -1.752 0.744 H26 A1ESA 42 A1ESA H27 H17 H 0 1 N N N N N N 152.428 155.498 187.530 7.502 1.748 1.320 H27 A1ESA 43 A1ESA H28 H18 H 0 1 N N N N N N 151.618 154.256 188.543 6.028 0.875 1.804 H28 A1ESA 44 A1ESA H29 H19 H 0 1 N N N N N N 152.661 153.754 187.170 7.624 0.117 2.024 H29 A1ESA 45 A1ESA H4 H20 H 0 1 N N N N N N 151.778 155.825 185.232 6.509 2.069 -0.920 H4 A1ESA 46 A1ESA H5 H21 H 0 1 N N N N N N 151.771 154.088 184.772 6.078 0.667 -1.930 H5 A1ESA 47 A1ESA H6 H22 H 0 1 N N N N N N 150.281 156.550 187.184 6.251 -1.679 -0.921 H6 A1ESA 48 A1ESA H7 H23 H 0 1 N N N N N N 149.336 155.283 188.038 6.798 -1.850 0.765 H7 A1ESA 49 A1ESA H8 H24 H 0 1 N N N N N N 147.069 156.695 184.304 2.537 1.232 0.982 H8 A1ESA 50 A1ESA H9 H25 H 0 1 N N N N N N 148.172 156.400 182.917 2.657 -0.400 1.683 H9 A1ESA 51 A1ESA H10 H26 H 0 1 N N N N N N 147.588 154.028 182.926 1.927 0.245 -1.210 H10 A1ESA 52 A1ESA H11 H27 H 0 1 N N N N N N 146.535 154.275 184.360 2.047 -1.387 -0.508 H11 A1ESA 53 A1ESA H12 H28 H 0 1 N N N N N N 145.091 155.754 183.099 0.140 0.811 0.414 H12 A1ESA 54 A1ESA H13 H29 H 0 1 N N N N N N 146.185 155.661 181.677 0.261 -0.821 1.115 H13 A1ESA 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ESA C1 C2 SING N N 1 A1ESA C2 C3 SING N N 2 A1ESA C3 C4 SING N N 3 A1ESA C4 O1 DOUB N N 4 A1ESA C4 N1 SING N N 5 A1ESA N1 C5 SING N N 6 A1ESA C5 O2 DOUB N N 7 A1ESA C5 C6 SING N N 8 A1ESA N1 C7 SING N N 9 A1ESA C7 C8 SING N N 10 A1ESA C8 C9 SING N N 11 A1ESA C9 C10 SING N N 12 A1ESA C10 N2 SING N N 13 A1ESA N2 C11 SING N N 14 A1ESA C11 C12 SING N N 15 A1ESA C12 N3 SING N N 16 A1ESA N3 C13 SING N N 17 A1ESA C13 C14 SING N N 18 A1ESA N3 C15 SING N N 19 A1ESA C15 N4 DOUB Y N 20 A1ESA N4 C16 SING Y N 21 A1ESA C16 C17 DOUB Y N 22 A1ESA C17 C18 SING Y N 23 A1ESA C18 N5 DOUB Y N 24 A1ESA C2 C19 SING N N 25 A1ESA C2 C6 SING N N 26 A1ESA N2 C14 SING N N 27 A1ESA C15 N5 SING Y N 28 A1ESA C1 H1 SING N N 29 A1ESA C1 H2 SING N N 30 A1ESA C1 H3 SING N N 31 A1ESA C10 H14 SING N N 32 A1ESA C10 H15 SING N N 33 A1ESA C11 H16 SING N N 34 A1ESA C11 H17 SING N N 35 A1ESA C12 H18 SING N N 36 A1ESA C12 H19 SING N N 37 A1ESA C13 H20 SING N N 38 A1ESA C13 H21 SING N N 39 A1ESA C14 H22 SING N N 40 A1ESA C14 H23 SING N N 41 A1ESA C16 H24 SING N N 42 A1ESA C17 H25 SING N N 43 A1ESA C18 H26 SING N N 44 A1ESA C19 H27 SING N N 45 A1ESA C19 H28 SING N N 46 A1ESA C19 H29 SING N N 47 A1ESA C3 H4 SING N N 48 A1ESA C3 H5 SING N N 49 A1ESA C6 H6 SING N N 50 A1ESA C6 H7 SING N N 51 A1ESA C7 H8 SING N N 52 A1ESA C7 H9 SING N N 53 A1ESA C8 H10 SING N N 54 A1ESA C8 H11 SING N N 55 A1ESA C9 H12 SING N N 56 A1ESA C9 H13 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ESA InChI InChI 1.06 "InChI=1S/C19H29N5O2/c1-19(2)14-16(25)24(17(26)15-19)9-4-3-8-22-10-12-23(13-11-22)18-20-6-5-7-21-18/h5-7H,3-4,8-15H2,1-2H3" A1ESA InChIKey InChI 1.06 QOIGKGMMAGJZNZ-UHFFFAOYSA-N A1ESA SMILES_CANONICAL CACTVS 3.385 "CC1(C)CC(=O)N(CCCCN2CCN(CC2)c3ncccn3)C(=O)C1" A1ESA SMILES CACTVS 3.385 "CC1(C)CC(=O)N(CCCCN2CCN(CC2)c3ncccn3)C(=O)C1" A1ESA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CC(=O)N(C(=O)C1)CCCCN2CCN(CC2)c3ncccn3)C" A1ESA SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CC(=O)N(C(=O)C1)CCCCN2CCN(CC2)c3ncccn3)C" # _pdbx_chem_comp_identifier.comp_id A1ESA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4,4-dimethyl-1-[4-(4-pyrimidin-2-ylpiperazin-1-yl)butyl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ESA "Create component" 2025-06-24 PDBC A1ESA "Initial release" 2025-11-12 RCSB #