data_A1ESD # _chem_comp.id A1ESD _chem_comp.name "2-azanyl-N-[(2R)-1-[(3S)-3-[dimethylamino(methyl)carbamoyl]-3-(phenylmethyl)piperidin-1-yl]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]-2-methyl-propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H42 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-24 _chem_comp.pdbx_modified_date 2025-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 546.704 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ESD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UY3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ESD C10 C1 C 0 1 Y N N N N N 97.282 90.537 130.429 5.161 -0.370 -0.477 C10 A1ESD 1 A1ESD C13 C2 C 0 1 Y N N N N N 99.631 93.331 131.321 5.891 -3.619 0.944 C13 A1ESD 2 A1ESD C15 C3 C 0 1 Y N N N N N 98.402 94.080 133.498 3.722 -4.593 0.594 C15 A1ESD 3 A1ESD C17 C4 C 0 1 Y N N N N N 97.530 92.079 132.011 4.127 -2.342 -0.099 C17 A1ESD 4 A1ESD C21 C5 C 0 1 N N N N N N 94.152 93.787 133.882 -0.189 -1.703 -0.959 C21 A1ESD 5 A1ESD C22 C6 C 0 1 N N N N N N 93.354 95.084 133.896 -1.299 -2.297 -0.086 C22 A1ESD 6 A1ESD C24 C7 C 0 1 N N S N N N 91.410 93.888 135.053 -2.828 -0.420 -0.712 C24 A1ESD 7 A1ESD C26 C8 C 0 1 N N N N N N 90.826 93.900 136.485 -4.203 -0.067 -1.283 C26 A1ESD 8 A1ESD C28 C9 C 0 1 Y N N N N N 90.968 96.458 137.239 -5.721 -0.294 0.694 C28 A1ESD 9 A1ESD C01 C10 C 0 1 N N N N N N 93.559 89.583 128.214 5.047 3.255 0.510 C01 A1ESD 10 A1ESD C02 C11 C 0 1 N N N N N N 92.341 90.389 128.642 3.542 3.524 0.437 C02 A1ESD 11 A1ESD C03 C12 C 0 1 N N N N N N 91.187 89.439 128.931 3.291 4.805 -0.362 C03 A1ESD 12 A1ESD C04 C13 C 0 1 N N N N N N 92.685 91.185 129.911 2.858 2.366 -0.242 C04 A1ESD 13 A1ESD C07 C14 C 0 1 N N R N N N 94.439 91.482 131.823 1.832 0.156 -0.186 C07 A1ESD 14 A1ESD C08 C15 C 0 1 N N N N N N 95.517 90.565 132.326 2.745 -0.407 -1.278 C08 A1ESD 15 A1ESD C09 C16 C 0 1 Y N N N N N 96.768 91.041 131.599 3.982 -0.990 -0.646 C09 A1ESD 16 A1ESD C12 C17 C 0 1 Y N N N N N 98.560 92.218 131.104 5.451 -2.432 0.369 C12 A1ESD 17 A1ESD C14 C18 C 0 1 Y N N N N N 99.495 94.217 132.521 5.030 -4.689 1.049 C14 A1ESD 18 A1ESD C16 C19 C 0 1 Y N N N N N 97.397 93.005 133.273 3.272 -3.438 0.017 C16 A1ESD 19 A1ESD C18 C20 C 0 1 N N N N N N 93.400 91.501 132.917 0.542 0.629 -0.805 C18 A1ESD 20 A1ESD C23 C21 C 0 1 N N N N N N 92.326 95.047 134.959 -2.661 -1.941 -0.687 C23 A1ESD 21 A1ESD C25 C22 C 0 1 N N N N N N 92.210 92.579 134.923 -1.735 0.195 -1.592 C25 A1ESD 22 A1ESD C27 C23 C 0 1 Y N N N N N 90.165 95.273 136.708 -5.270 -0.799 -0.512 C27 A1ESD 23 A1ESD C29 C24 C 0 1 Y N N N N N 90.294 97.798 137.420 -6.700 -0.966 1.401 C29 A1ESD 24 A1ESD C30 C25 C 0 1 Y N N N N N 88.814 97.927 137.083 -7.233 -2.140 0.901 C30 A1ESD 25 A1ESD C31 C26 C 0 1 Y N N N N N 87.977 96.769 136.565 -6.786 -2.641 -0.308 C31 A1ESD 26 A1ESD C32 C27 C 0 1 Y N N N N N 88.683 95.428 136.387 -5.799 -1.975 -1.010 C32 A1ESD 27 A1ESD C33 C28 C 0 1 N N N N N N 90.285 94.142 133.955 -2.711 0.122 0.689 C33 A1ESD 28 A1ESD C36 C29 C 0 1 N N N N N N 88.287 94.075 132.551 -2.553 1.990 2.245 C36 A1ESD 29 A1ESD C38 C30 C 0 1 N N N N N N 87.455 91.836 133.254 -4.481 2.887 0.128 C38 A1ESD 30 A1ESD C39 C31 C 0 1 N N N N N N 87.575 92.705 135.354 -2.140 3.320 -0.316 C39 A1ESD 31 A1ESD N06 N1 N 0 1 N N N N N N 93.922 90.868 130.616 2.498 1.282 0.474 N06 A1ESD 32 A1ESD N11 N2 N 0 1 Y N N N N N 98.407 91.266 130.135 6.051 -1.216 0.127 N11 A1ESD 33 A1ESD N20 N3 N 0 1 N N N N N N 93.268 92.593 133.864 -0.425 -0.260 -1.107 N20 A1ESD 34 A1ESD N35 N4 N 0 1 N N N N N N 89.012 93.480 133.648 -2.814 1.447 0.910 N35 A1ESD 35 A1ESD N37 N5 N 0 1 N N N N N N 88.407 92.347 134.227 -3.163 2.285 -0.112 N37 A1ESD 36 A1ESD N40 N6 N 0 1 N N N N N N 91.971 91.266 127.550 3.007 3.682 1.796 N40 A1ESD 37 A1ESD O05 O1 O 0 1 N N N N N N 91.959 92.026 130.296 2.630 2.410 -1.432 O05 A1ESD 38 A1ESD O19 O2 O 0 1 N N N N N N 92.676 90.604 132.999 0.373 1.808 -1.030 O19 A1ESD 39 A1ESD O34 O3 O 0 1 N N N N N N 90.451 95.073 133.262 -2.523 -0.635 1.618 O34 A1ESD 40 A1ESD H1 H1 H 0 1 N N N N N N 96.877 89.721 129.849 5.376 0.644 -0.779 H1 A1ESD 41 A1ESD H2 H2 H 0 1 N N N N N N 100.447 93.459 130.626 6.907 -3.704 1.301 H2 A1ESD 42 A1ESD H3 H3 H 0 1 N N N N N N 98.332 94.739 134.351 3.059 -5.441 0.684 H3 A1ESD 43 A1ESD H4 H4 H 0 1 N N N N N N 94.784 93.748 134.782 0.777 -1.868 -0.484 H4 A1ESD 44 A1ESD H5 H5 H 0 1 N N N N N N 94.789 93.771 132.986 -0.200 -2.180 -1.939 H5 A1ESD 45 A1ESD H6 H6 H 0 1 N N N N N N 94.036 95.927 134.081 -1.191 -3.381 -0.047 H6 A1ESD 46 A1ESD H7 H7 H 0 1 N N N N N N 92.862 95.217 132.921 -1.228 -1.887 0.921 H7 A1ESD 47 A1ESD H8 H8 H 0 1 N N N N N N 90.077 93.102 136.591 -4.366 1.008 -1.199 H8 A1ESD 48 A1ESD H9 H9 H 0 1 N N N N N N 91.631 93.748 137.219 -4.247 -0.359 -2.332 H9 A1ESD 49 A1ESD H10 H10 H 0 1 N N N N N N 92.013 96.339 137.484 -5.305 0.622 1.085 H10 A1ESD 50 A1ESD H11 H11 H 0 1 N N N N N N 93.858 88.909 129.030 5.542 4.093 1.001 H11 A1ESD 51 A1ESD H12 H12 H 0 1 N N N N N N 93.311 88.991 127.321 5.226 2.343 1.079 H12 A1ESD 52 A1ESD H13 H13 H 0 1 N N N N N N 94.388 90.267 127.981 5.444 3.138 -0.498 H13 A1ESD 53 A1ESD H14 H14 H 0 1 N N N N N N 91.461 88.770 129.760 3.689 4.688 -1.370 H14 A1ESD 54 A1ESD H15 H15 H 0 1 N N N N N N 90.295 90.020 129.209 2.220 4.996 -0.414 H15 A1ESD 55 A1ESD H16 H16 H 0 1 N N N N N N 90.971 88.841 128.033 3.787 5.642 0.129 H16 A1ESD 56 A1ESD H17 H17 H 0 1 N N N N N N 94.833 92.492 131.635 1.620 -0.621 0.548 H17 A1ESD 57 A1ESD H18 H18 H 0 1 N N N N N N 95.291 89.519 132.073 2.216 -1.186 -1.827 H18 A1ESD 58 A1ESD H19 H19 H 0 1 N N N N N N 95.636 90.661 133.415 3.029 0.392 -1.962 H19 A1ESD 59 A1ESD H20 H20 H 0 1 N N N N N N 100.232 94.991 132.677 5.375 -5.612 1.490 H20 A1ESD 60 A1ESD H21 H21 H 0 1 N N N N N N 96.585 92.863 133.970 2.257 -3.375 -0.348 H21 A1ESD 61 A1ESD H22 H22 H 0 1 N N N N N N 92.858 95.112 135.920 -2.722 -2.330 -1.704 H22 A1ESD 62 A1ESD H23 H23 H 0 1 N N N N N N 91.698 95.940 134.827 -3.452 -2.383 -0.082 H23 A1ESD 63 A1ESD H24 H24 H 0 1 N N N N N N 91.504 91.768 134.691 -1.874 -0.125 -2.625 H24 A1ESD 64 A1ESD H25 H25 H 0 1 N N N N N N 92.695 92.377 135.889 -1.790 1.283 -1.536 H25 A1ESD 65 A1ESD H26 H26 H 0 1 N N N N N N 90.852 98.649 137.782 -7.049 -0.575 2.345 H26 A1ESD 66 A1ESD H27 H27 H 0 1 N N N N N N 88.337 98.886 137.219 -7.997 -2.665 1.454 H27 A1ESD 67 A1ESD H28 H28 H 0 1 N N N N N N 86.929 96.890 136.333 -7.202 -3.558 -0.699 H28 A1ESD 68 A1ESD H29 H29 H 0 1 N N N N N N 88.124 94.576 136.028 -5.450 -2.367 -1.954 H29 A1ESD 69 A1ESD H30 H30 H 0 1 N N N N N N 87.350 93.522 132.387 -1.497 2.243 2.335 H30 A1ESD 70 A1ESD H31 H31 H 0 1 N N N N N N 88.057 95.124 132.790 -3.155 2.886 2.397 H31 A1ESD 71 A1ESD H32 H32 H 0 1 N N N N N N 88.902 94.033 131.640 -2.814 1.245 2.997 H32 A1ESD 72 A1ESD H33 H33 H 0 1 N N N N N N 86.954 90.946 133.663 -4.437 3.517 1.016 H33 A1ESD 73 A1ESD H34 H34 H 0 1 N N N N N N 86.705 92.610 133.034 -4.766 3.492 -0.733 H34 A1ESD 74 A1ESD H35 H35 H 0 1 N N N N N N 87.986 91.566 132.329 -5.219 2.099 0.278 H35 A1ESD 75 A1ESD H36 H36 H 0 1 N N N N N N 88.204 93.109 136.161 -2.035 3.911 0.593 H36 A1ESD 76 A1ESD H37 H37 H 0 1 N N N N N N 86.844 93.466 135.043 -1.188 2.847 -0.555 H37 A1ESD 77 A1ESD H38 H38 H 0 1 N N N N N N 87.044 91.812 135.716 -2.440 3.969 -1.139 H38 A1ESD 78 A1ESD H39 H39 H 0 1 N N N N N N 94.480 90.140 130.219 2.680 1.247 1.426 H39 A1ESD 79 A1ESD H40 H40 H 0 1 N N N N N N 99.009 91.125 129.349 6.968 -0.992 0.352 H40 A1ESD 80 A1ESD H41 H41 H 0 1 N N N N N N 91.171 91.806 127.812 3.494 4.411 2.295 H41 A1ESD 81 A1ESD H42 H42 H 0 1 N N N N N N 92.733 91.879 127.342 2.014 3.861 1.774 H42 A1ESD 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ESD N40 C02 SING N N 1 A1ESD C01 C02 SING N N 2 A1ESD C02 C03 SING N N 3 A1ESD C02 C04 SING N N 4 A1ESD C04 O05 DOUB N N 5 A1ESD C04 N06 SING N N 6 A1ESD N11 C10 SING Y N 7 A1ESD N11 C12 SING Y N 8 A1ESD C10 C09 DOUB Y N 9 A1ESD N06 C07 SING N N 10 A1ESD C12 C13 DOUB Y N 11 A1ESD C12 C17 SING Y N 12 A1ESD C13 C14 SING Y N 13 A1ESD C09 C17 SING Y N 14 A1ESD C09 C08 SING N N 15 A1ESD C07 C08 SING N N 16 A1ESD C07 C18 SING N N 17 A1ESD C17 C16 DOUB Y N 18 A1ESD C14 C15 DOUB Y N 19 A1ESD C36 N35 SING N N 20 A1ESD C18 O19 DOUB N N 21 A1ESD C18 N20 SING N N 22 A1ESD C38 N37 SING N N 23 A1ESD O34 C33 DOUB N N 24 A1ESD C16 C15 SING Y N 25 A1ESD N35 C33 SING N N 26 A1ESD N35 N37 SING N N 27 A1ESD N20 C21 SING N N 28 A1ESD N20 C25 SING N N 29 A1ESD C21 C22 SING N N 30 A1ESD C22 C23 SING N N 31 A1ESD C33 C24 SING N N 32 A1ESD N37 C39 SING N N 33 A1ESD C25 C24 SING N N 34 A1ESD C23 C24 SING N N 35 A1ESD C24 C26 SING N N 36 A1ESD C32 C31 DOUB Y N 37 A1ESD C32 C27 SING Y N 38 A1ESD C26 C27 SING N N 39 A1ESD C31 C30 SING Y N 40 A1ESD C27 C28 DOUB Y N 41 A1ESD C30 C29 DOUB Y N 42 A1ESD C28 C29 SING Y N 43 A1ESD C10 H1 SING N N 44 A1ESD C13 H2 SING N N 45 A1ESD C15 H3 SING N N 46 A1ESD C21 H4 SING N N 47 A1ESD C21 H5 SING N N 48 A1ESD C22 H6 SING N N 49 A1ESD C22 H7 SING N N 50 A1ESD C26 H8 SING N N 51 A1ESD C26 H9 SING N N 52 A1ESD C28 H10 SING N N 53 A1ESD C01 H11 SING N N 54 A1ESD C01 H12 SING N N 55 A1ESD C01 H13 SING N N 56 A1ESD C03 H14 SING N N 57 A1ESD C03 H15 SING N N 58 A1ESD C03 H16 SING N N 59 A1ESD C07 H17 SING N N 60 A1ESD C08 H18 SING N N 61 A1ESD C08 H19 SING N N 62 A1ESD C14 H20 SING N N 63 A1ESD C16 H21 SING N N 64 A1ESD C23 H22 SING N N 65 A1ESD C23 H23 SING N N 66 A1ESD C25 H24 SING N N 67 A1ESD C25 H25 SING N N 68 A1ESD C29 H26 SING N N 69 A1ESD C30 H27 SING N N 70 A1ESD C31 H28 SING N N 71 A1ESD C32 H29 SING N N 72 A1ESD C36 H30 SING N N 73 A1ESD C36 H31 SING N N 74 A1ESD C36 H32 SING N N 75 A1ESD C38 H33 SING N N 76 A1ESD C38 H34 SING N N 77 A1ESD C38 H35 SING N N 78 A1ESD C39 H36 SING N N 79 A1ESD C39 H37 SING N N 80 A1ESD C39 H38 SING N N 81 A1ESD N06 H39 SING N N 82 A1ESD N11 H40 SING N N 83 A1ESD N40 H41 SING N N 84 A1ESD N40 H42 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ESD InChI InChI 1.06 "InChI=1S/C31H42N6O3/c1-30(2,32)28(39)34-26(18-23-20-33-25-15-10-9-14-24(23)25)27(38)37-17-11-16-31(21-37,29(40)36(5)35(3)4)19-22-12-7-6-8-13-22/h6-10,12-15,20,26,33H,11,16-19,21,32H2,1-5H3,(H,34,39)/t26-,31+/m1/s1" A1ESD InChIKey InChI 1.06 VQPFSIRUEPQQPP-NEEKEDPPSA-N A1ESD SMILES_CANONICAL CACTVS 3.385 "CN(C)N(C)C(=O)[C@@]1(CCCN(C1)C(=O)[C@@H](Cc2c[nH]c3ccccc23)NC(=O)C(C)(C)N)Cc4ccccc4" A1ESD SMILES CACTVS 3.385 "CN(C)N(C)C(=O)[C]1(CCCN(C1)C(=O)[CH](Cc2c[nH]c3ccccc23)NC(=O)C(C)(C)N)Cc4ccccc4" A1ESD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)N[C@H](Cc1c[nH]c2c1cccc2)C(=O)N3CCC[C@@](C3)(Cc4ccccc4)C(=O)N(C)N(C)C)N" A1ESD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)NC(Cc1c[nH]c2c1cccc2)C(=O)N3CCCC(C3)(Cc4ccccc4)C(=O)N(C)N(C)C)N" # _pdbx_chem_comp_identifier.comp_id A1ESD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-~{N}-[(2~{R})-1-[(3~{S})-3-[dimethylamino(methyl)carbamoyl]-3-(phenylmethyl)piperidin-1-yl]-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]-2-methyl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ESD "Create component" 2025-06-24 PDBC A1ESD "Initial release" 2025-07-02 RCSB #