data_A1ETX # _chem_comp.id A1ETX _chem_comp.name "(3~{S})-3-(1~{H}-benzimidazol-2-ylamino)-~{N}-(cyanomethyl)-~{N}-methyl-3-[3-(trifluoromethyl)phenyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 F3 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-17 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.385 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ETX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9VU9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ETX C10 C1 C 0 1 Y N N N N N 137.296 138.673 147.711 1.017 0.873 0.641 C10 A1ETX 1 A1ETX C13 C2 C 0 1 Y N N N N N 139.693 139.869 148.444 3.564 1.148 1.681 C13 A1ETX 2 A1ETX C15 C3 C 0 1 Y N N N N N 137.362 140.047 147.892 1.213 0.835 2.009 C15 A1ETX 3 A1ETX C21 C4 C 0 1 Y N N N N N 136.527 135.576 146.851 -0.974 -1.622 0.499 C21 A1ETX 4 A1ETX C24 C5 C 0 1 Y N N N N N 136.026 132.306 148.246 -1.567 -5.120 0.771 C24 A1ETX 5 A1ETX C26 C6 C 0 1 Y N N N N N 138.313 131.560 148.086 -0.160 -5.812 -1.045 C26 A1ETX 6 A1ETX C28 C7 C 0 1 Y N N N N N 137.691 133.785 147.329 -0.344 -3.482 -0.524 C28 A1ETX 7 A1ETX C01 C8 C 0 1 N N N N N N 132.997 139.495 148.542 -2.868 4.285 0.090 C01 A1ETX 8 A1ETX C03 C9 C 0 1 N N N N N N 131.373 137.629 148.144 -4.580 2.915 -1.188 C03 A1ETX 9 A1ETX C04 C10 C 0 1 N N N N N N 130.526 137.987 149.363 -5.587 2.474 -0.210 C04 A1ETX 10 A1ETX C06 C11 C 0 1 N N N N N N 133.818 137.108 148.358 -2.448 1.958 -0.497 C06 A1ETX 11 A1ETX C08 C12 C 0 1 N N N N N N 135.262 137.556 148.585 -1.106 2.067 0.179 C08 A1ETX 12 A1ETX C09 C13 C 0 1 N N S N N N 135.967 138.021 147.312 -0.372 0.729 0.075 C09 A1ETX 13 A1ETX C11 C14 C 0 1 Y N N N N N 138.431 137.905 147.905 2.095 1.048 -0.207 C11 A1ETX 14 A1ETX C12 C15 C 0 1 Y N N N N N 139.626 138.497 148.266 3.368 1.186 0.313 C12 A1ETX 15 A1ETX C14 C16 C 0 1 Y N N N N N 138.559 140.643 148.257 2.487 0.972 2.529 C14 A1ETX 16 A1ETX C16 C17 C 0 1 N N N N N N 140.859 137.623 148.470 4.543 1.377 -0.612 C16 A1ETX 17 A1ETX C23 C18 C 0 1 Y N N N N N 136.396 133.555 147.678 -1.229 -3.788 0.524 C23 A1ETX 18 A1ETX C25 C19 C 0 1 Y N N N N N 136.987 131.323 148.444 -1.033 -6.119 -0.013 C25 A1ETX 19 A1ETX C27 C20 C 0 1 Y N N N N N 138.674 132.779 147.531 0.185 -4.500 -1.303 C27 A1ETX 20 A1ETX F17 F1 F 0 1 N N N N N N 141.254 137.103 147.273 4.288 0.735 -1.828 F17 A1ETX 21 A1ETX F18 F2 F 0 1 N N N N N N 141.870 138.374 148.994 4.741 2.743 -0.838 F18 A1ETX 22 A1ETX F19 F3 F 0 1 N N N N N N 140.552 136.602 149.320 5.690 0.830 -0.027 F19 A1ETX 23 A1ETX N02 N1 N 0 1 N N N N N N 132.736 138.079 148.347 -3.275 3.022 -0.531 N02 A1ETX 24 A1ETX N05 N2 N 0 1 N N N N N N 129.902 138.251 150.271 -6.365 2.133 0.545 N05 A1ETX 25 A1ETX N20 N3 N 0 1 N N N N N N 136.181 136.912 146.390 -1.104 -0.290 0.831 N20 A1ETX 26 A1ETX N22 N4 N 0 1 Y N N N N N 135.690 134.678 147.373 -1.581 -2.611 1.105 N22 A1ETX 27 A1ETX N29 N5 N 0 1 Y N N N N N 137.745 135.039 146.819 -0.198 -2.105 -0.515 N29 A1ETX 28 A1ETX O07 O1 O 0 1 N N N N N N 133.571 135.960 148.202 -2.785 0.912 -1.012 O07 A1ETX 29 A1ETX H131 H1 H 0 0 N N N N N N 140.626 140.334 148.728 4.559 1.256 2.087 H131 A1ETX 30 A1ETX H151 H2 H 0 0 N N N N N N 136.480 140.653 147.748 0.371 0.698 2.672 H151 A1ETX 31 A1ETX H241 H3 H 0 0 N N N N N N 134.999 132.121 148.523 -2.247 -5.366 1.573 H241 A1ETX 32 A1ETX H261 H4 H 0 0 N N N N N N 139.059 130.795 148.241 0.253 -6.604 -1.652 H261 A1ETX 33 A1ETX H011 H5 H 0 0 N N N N N N 134.077 139.654 148.680 -3.190 4.298 1.132 H011 A1ETX 34 A1ETX H012 H6 H 0 0 N N N N N N 132.653 140.056 147.660 -1.783 4.380 0.044 H012 A1ETX 35 A1ETX H013 H7 H 0 0 N N N N N N 132.458 139.848 149.434 -3.329 5.116 -0.442 H013 A1ETX 36 A1ETX H032 H8 H 0 0 N N N N N N 130.955 138.119 147.252 -4.520 2.190 -2.000 H032 A1ETX 37 A1ETX H031 H9 H 0 0 N N N N N N 131.365 136.538 148.001 -4.865 3.888 -1.589 H031 A1ETX 38 A1ETX H081 H10 H 0 0 N N N N N N 135.826 136.710 149.006 -0.516 2.844 -0.308 H081 A1ETX 39 A1ETX H082 H11 H 0 0 N N N N N N 135.259 138.388 149.304 -1.248 2.323 1.229 H082 A1ETX 40 A1ETX H091 H12 H 0 0 N N N N N N 135.340 138.783 146.826 -0.308 0.429 -0.971 H091 A1ETX 41 A1ETX H111 H13 H 0 0 N N N N N N 138.382 136.834 147.773 1.942 1.077 -1.275 H111 A1ETX 42 A1ETX H141 H14 H 0 0 N N N N N N 138.608 141.713 148.396 2.640 0.943 3.598 H141 A1ETX 43 A1ETX H251 H15 H 0 0 N N N N N N 136.706 130.374 148.876 -1.295 -7.149 0.179 H251 A1ETX 44 A1ETX H271 H16 H 0 0 N N N N N N 139.701 132.963 147.253 0.866 -4.267 -2.108 H271 A1ETX 45 A1ETX H201 H17 H 0 0 N N N N N N 136.919 137.196 145.778 -1.681 -0.027 1.565 H201 A1ETX 46 A1ETX H291 H19 H 0 0 N N N N N N 138.568 135.489 146.474 0.353 -1.581 -1.117 H291 A1ETX 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ETX N20 C21 SING N N 1 A1ETX N20 C09 SING N N 2 A1ETX N29 C21 SING Y N 3 A1ETX N29 C28 SING Y N 4 A1ETX C21 N22 DOUB Y N 5 A1ETX F17 C16 SING N N 6 A1ETX C09 C10 SING N N 7 A1ETX C09 C08 SING N N 8 A1ETX C28 C27 DOUB Y N 9 A1ETX C28 C23 SING Y N 10 A1ETX N22 C23 SING Y N 11 A1ETX C27 C26 SING Y N 12 A1ETX C23 C24 DOUB Y N 13 A1ETX C10 C15 DOUB Y N 14 A1ETX C10 C11 SING Y N 15 A1ETX C15 C14 SING Y N 16 A1ETX C11 C12 DOUB Y N 17 A1ETX C26 C25 DOUB Y N 18 A1ETX C03 N02 SING N N 19 A1ETX C03 C04 SING N N 20 A1ETX O07 C06 DOUB N N 21 A1ETX C24 C25 SING Y N 22 A1ETX C14 C13 DOUB Y N 23 A1ETX C12 C13 SING Y N 24 A1ETX C12 C16 SING N N 25 A1ETX N02 C06 SING N N 26 A1ETX N02 C01 SING N N 27 A1ETX C06 C08 SING N N 28 A1ETX C16 F18 SING N N 29 A1ETX C16 F19 SING N N 30 A1ETX C04 N05 TRIP N N 31 A1ETX C13 H131 SING N N 32 A1ETX C15 H151 SING N N 33 A1ETX C24 H241 SING N N 34 A1ETX C26 H261 SING N N 35 A1ETX C01 H011 SING N N 36 A1ETX C01 H012 SING N N 37 A1ETX C01 H013 SING N N 38 A1ETX C03 H032 SING N N 39 A1ETX C03 H031 SING N N 40 A1ETX C08 H081 SING N N 41 A1ETX C08 H082 SING N N 42 A1ETX C09 H091 SING N N 43 A1ETX C11 H111 SING N N 44 A1ETX C14 H141 SING N N 45 A1ETX C25 H251 SING N N 46 A1ETX C27 H271 SING N N 47 A1ETX N20 H201 SING N N 48 A1ETX N29 H291 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ETX InChI InChI 1.06 "InChI=1S/C20H18F3N5O/c1-28(10-9-24)18(29)12-17(13-5-4-6-14(11-13)20(21,22)23)27-19-25-15-7-2-3-8-16(15)26-19/h2-8,11,17H,10,12H2,1H3,(H2,25,26,27)/t17-/m0/s1" A1ETX InChIKey InChI 1.06 KPVQYQOKIIKXMI-KRWDZBQOSA-N A1ETX SMILES_CANONICAL CACTVS 3.385 "CN(CC#N)C(=O)C[C@H](Nc1[nH]c2ccccc2n1)c3cccc(c3)C(F)(F)F" A1ETX SMILES CACTVS 3.385 "CN(CC#N)C(=O)C[CH](Nc1[nH]c2ccccc2n1)c3cccc(c3)C(F)(F)F" A1ETX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#N)C(=O)C[C@@H](c1cccc(c1)C(F)(F)F)Nc2[nH]c3ccccc3n2" A1ETX SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#N)C(=O)CC(c1cccc(c1)C(F)(F)F)Nc2[nH]c3ccccc3n2" # _pdbx_chem_comp_identifier.comp_id A1ETX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-(1~{H}-benzimidazol-2-ylamino)-~{N}-(cyanomethyl)-~{N}-methyl-3-[3-(trifluoromethyl)phenyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ETX "Create component" 2025-07-17 PDBC A1ETX "Initial release" 2026-03-11 RCSB #