data_A1EX4 # _chem_comp.id A1EX4 _chem_comp.name "6-[4-[[4-azanyl-1-[7-[bis(fluoranyl)methyl]pyrrolo[2,3-d]pyrimidin-4-yl]piperidin-4-yl]methyl]phenyl]-2,3-dihydroisoindol-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H26 F2 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-12 _chem_comp.pdbx_modified_date 2026-04-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EX4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WQ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EX4 C36 C1 C 0 1 N N N N N N 33.927 -33.401 42.275 -1.699 -3.648 0.471 C36 A1EX4 1 A1EX4 C35 C2 C 0 1 N N N N N N 34.783 -32.610 43.252 -2.807 -2.897 -0.271 C35 A1EX4 2 A1EX4 C32 C3 C 0 1 N N N N N N 36.564 -27.806 47.423 -7.269 2.788 0.248 C32 A1EX4 3 A1EX4 C23 C4 C 0 1 Y N N N N N 35.182 -32.141 45.768 -4.252 -1.051 -0.097 C23 A1EX4 4 A1EX4 N22 N1 N 0 1 N N N N N N 34.487 -32.914 44.734 -3.164 -1.685 0.477 N22 A1EX4 5 A1EX4 C25 C5 C 0 1 Y N N N N N 36.354 -32.124 47.757 -5.869 -0.941 -1.739 C25 A1EX4 6 A1EX4 N26 N2 N 0 1 Y N N N N N 36.471 -30.801 47.727 -6.388 0.166 -1.255 N26 A1EX4 7 A1EX4 C21 C6 C 0 1 N N N N N N 34.446 -34.451 45.012 -2.020 -0.771 0.587 C21 A1EX4 8 A1EX4 C14 C7 C 0 1 N N N N N N 42.643 -39.114 43.503 8.731 0.379 0.021 C14 A1EX4 9 A1EX4 C16 C8 C 0 1 Y N N N N N 41.696 -38.583 42.418 7.310 0.771 -0.053 C16 A1EX4 10 A1EX4 C12 C9 C 0 1 N N N N N N 43.847 -38.962 41.461 8.654 2.660 0.170 C12 A1EX4 11 A1EX4 C11 C10 C 0 1 Y N N N N N 42.393 -38.491 41.215 7.235 2.164 0.036 C11 A1EX4 12 A1EX4 C02 C11 C 0 1 N N N N N N 33.918 -34.843 42.638 -0.478 -2.735 0.615 C02 A1EX4 13 A1EX4 C03 C12 C 0 1 N N N N N N 34.006 -36.005 41.518 0.056 -2.374 -0.773 C03 A1EX4 14 A1EX4 C04 C13 C 0 1 Y N N N N N 35.501 -36.515 41.514 1.326 -1.575 -0.630 C04 A1EX4 15 A1EX4 C05 C14 C 0 1 Y N N N N N 36.436 -35.737 40.869 1.266 -0.196 -0.542 C05 A1EX4 16 A1EX4 C06 C15 C 0 1 Y N N N N N 37.788 -36.149 40.840 2.427 0.540 -0.411 C06 A1EX4 17 A1EX4 C07 C16 C 0 1 Y N N N N N 38.164 -37.348 41.469 3.659 -0.108 -0.369 C07 A1EX4 18 A1EX4 C08 C17 C 0 1 Y N N N N N 39.675 -37.763 41.394 4.910 0.678 -0.228 C08 A1EX4 19 A1EX4 C09 C18 C 0 1 Y N N N N N 40.359 -37.663 40.175 4.852 2.068 -0.138 C09 A1EX4 20 A1EX4 C10 C19 C 0 1 Y N N N N N 41.717 -38.017 40.074 6.016 2.803 -0.007 C10 A1EX4 21 A1EX4 C17 C20 C 0 1 Y N N N N N 40.341 -38.219 42.518 6.139 0.028 -0.186 C17 A1EX4 22 A1EX4 C18 C21 C 0 1 Y N N N N N 37.216 -38.134 42.130 3.713 -1.498 -0.458 C18 A1EX4 23 A1EX4 C19 C22 C 0 1 Y N N N N N 35.875 -37.715 42.154 2.546 -2.225 -0.583 C19 A1EX4 24 A1EX4 C20 C23 C 0 1 N N N N N N 33.612 -35.244 44.003 -0.888 -1.459 1.354 C20 A1EX4 25 A1EX4 C27 C24 C 0 1 Y N N N N N 35.934 -30.087 46.712 -5.874 0.739 -0.167 C27 A1EX4 26 A1EX4 C28 C25 C 0 1 Y N N N N N 35.269 -30.723 45.690 -4.768 0.132 0.454 C28 A1EX4 27 A1EX4 C29 C26 C 0 1 Y N N N N N 34.848 -29.675 44.825 -4.431 0.974 1.601 C29 A1EX4 28 A1EX4 C30 C27 C 0 1 Y N N N N N 35.280 -28.457 45.363 -5.309 1.991 1.607 C30 A1EX4 29 A1EX4 F33 F1 F 0 1 N N N N N N 35.689 -26.865 47.866 -7.078 3.328 -1.029 F33 A1EX4 30 A1EX4 F34 F2 F 0 1 N N N N N N 37.564 -27.091 46.854 -8.488 2.102 0.285 F34 A1EX4 31 A1EX4 N01 N3 N 0 1 N N N N N N 32.464 -34.829 42.278 0.567 -3.430 1.377 N01 A1EX4 32 A1EX4 N13 N4 N 0 1 N N N N N N 43.943 -39.325 42.872 9.509 1.468 0.150 N13 A1EX4 33 A1EX4 N24 N5 N 0 1 Y N N N N N 35.712 -32.794 46.799 -4.830 -1.544 -1.188 N24 A1EX4 34 A1EX4 N31 N6 N 0 1 Y N N N N N 35.923 -28.743 46.481 -6.177 1.861 0.554 N31 A1EX4 35 A1EX4 O15 O1 O 0 1 N N N N N N 42.316 -39.292 44.641 9.139 -0.765 -0.024 O15 A1EX4 36 A1EX4 H361 H1 H 0 0 N N N N N N 32.897 -33.015 42.301 -2.055 -3.937 1.460 H361 A1EX4 37 A1EX4 H362 H2 H 0 0 N N N N N N 34.336 -33.286 41.260 -1.424 -4.540 -0.092 H362 A1EX4 38 A1EX4 H351 H3 H 0 0 N N N N N N 34.607 -31.538 43.077 -2.455 -2.620 -1.265 H351 A1EX4 39 A1EX4 H352 H4 H 0 0 N N N N N N 35.839 -32.845 43.055 -3.683 -3.539 -0.362 H352 A1EX4 40 A1EX4 H321 H5 H 0 0 N N N N N N 36.953 -28.385 48.274 -7.282 3.592 0.984 H321 A1EX4 41 A1EX4 H251 H6 H 0 0 N N N N N N 36.790 -32.672 48.579 -6.309 -1.375 -2.625 H251 A1EX4 42 A1EX4 H211 H7 H 0 0 N N N N N N 34.020 -34.610 46.014 -1.672 -0.504 -0.411 H211 A1EX4 43 A1EX4 H212 H8 H 0 0 N N N N N N 35.477 -34.835 44.986 -2.324 0.130 1.118 H212 A1EX4 44 A1EX4 H122 H9 H 0 0 N N N N N N 44.552 -38.149 41.231 8.903 3.314 -0.665 H122 A1EX4 45 A1EX4 H121 H10 H 0 0 N N N N N N 44.074 -39.834 40.830 8.776 3.194 1.113 H121 A1EX4 46 A1EX4 H031 H11 H 0 0 N N N N N N 33.740 -35.601 40.530 0.262 -3.287 -1.332 H031 A1EX4 47 A1EX4 H032 H12 H 0 0 N N N N N N 33.324 -36.830 41.772 -0.688 -1.781 -1.306 H032 A1EX4 48 A1EX4 H051 H13 H 0 0 N N N N N N 36.138 -34.817 40.388 0.311 0.305 -0.575 H051 A1EX4 49 A1EX4 H061 H14 H 0 0 N N N N N N 38.528 -35.545 40.337 2.379 1.617 -0.343 H061 A1EX4 50 A1EX4 H091 H15 H 0 0 N N N N N N 39.836 -37.309 39.299 3.897 2.572 -0.171 H091 A1EX4 51 A1EX4 H101 H16 H 0 0 N N N N N N 42.236 -37.926 39.131 5.969 3.880 0.063 H101 A1EX4 52 A1EX4 H171 H17 H 0 0 N N N N N N 39.825 -38.295 43.464 6.185 -1.049 -0.256 H171 A1EX4 53 A1EX4 H181 H18 H 0 0 N N N N N N 37.511 -39.052 42.616 4.666 -2.005 -0.425 H181 A1EX4 54 A1EX4 H191 H19 H 0 0 N N N N N N 35.131 -38.311 42.662 2.587 -3.302 -0.648 H191 A1EX4 55 A1EX4 H202 H20 H 0 0 N N N N N N 32.545 -35.064 44.199 -0.033 -0.786 1.422 H202 A1EX4 56 A1EX4 H201 H21 H 0 0 N N N N N N 33.831 -36.316 44.120 -1.232 -1.714 2.357 H201 A1EX4 57 A1EX4 H291 H22 H 0 0 N N N N N N 34.290 -29.798 43.909 -3.631 0.810 2.307 H291 A1EX4 58 A1EX4 H301 H23 H 0 0 N N N N N N 35.119 -27.474 44.945 -5.328 2.790 2.333 H301 A1EX4 59 A1EX4 H1 H24 H 0 1 N N N N N N 31.990 -34.143 42.830 1.384 -2.847 1.485 H1 A1EX4 60 A1EX4 H011 H25 H 0 0 N N N N N N 32.363 -34.604 41.309 0.219 -3.734 2.274 H011 A1EX4 61 A1EX4 H131 H27 H 0 0 N N N N N N 44.765 -39.663 43.331 10.476 1.466 0.219 H131 A1EX4 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EX4 C02 N01 SING N N 1 A1EX4 C04 C03 SING N N 2 A1EX4 C05 C04 DOUB Y N 3 A1EX4 C06 C05 SING Y N 4 A1EX4 C07 C06 DOUB Y N 5 A1EX4 C09 C08 DOUB Y N 6 A1EX4 C10 C09 SING Y N 7 A1EX4 C11 C10 DOUB Y N 8 A1EX4 N13 C12 SING N N 9 A1EX4 C14 N13 SING N N 10 A1EX4 O15 C14 DOUB N N 11 A1EX4 C12 C11 SING N N 12 A1EX4 C16 C11 SING Y N 13 A1EX4 C17 C16 DOUB Y N 14 A1EX4 C08 C07 SING N N 15 A1EX4 C18 C07 SING Y N 16 A1EX4 C19 C18 DOUB Y N 17 A1EX4 C03 C02 SING N N 18 A1EX4 C20 C02 SING N N 19 A1EX4 C21 C20 SING N N 20 A1EX4 N22 C21 SING N N 21 A1EX4 N24 C23 DOUB Y N 22 A1EX4 C25 N24 SING Y N 23 A1EX4 N26 C25 DOUB Y N 24 A1EX4 C27 N26 SING Y N 25 A1EX4 C28 C27 DOUB Y N 26 A1EX4 C29 C28 SING Y N 27 A1EX4 C30 C29 DOUB Y N 28 A1EX4 N31 C30 SING Y N 29 A1EX4 C32 N31 SING N N 30 A1EX4 F33 C32 SING N N 31 A1EX4 F34 C32 SING N N 32 A1EX4 C23 N22 SING N N 33 A1EX4 C35 N22 SING N N 34 A1EX4 C36 C35 SING N N 35 A1EX4 C02 C36 SING N N 36 A1EX4 C04 C19 SING Y N 37 A1EX4 C08 C17 SING Y N 38 A1EX4 C14 C16 SING N N 39 A1EX4 C23 C28 SING Y N 40 A1EX4 C27 N31 SING Y N 41 A1EX4 C36 H361 SING N N 42 A1EX4 C36 H362 SING N N 43 A1EX4 C35 H351 SING N N 44 A1EX4 C35 H352 SING N N 45 A1EX4 C32 H321 SING N N 46 A1EX4 C25 H251 SING N N 47 A1EX4 C21 H211 SING N N 48 A1EX4 C21 H212 SING N N 49 A1EX4 C12 H122 SING N N 50 A1EX4 C12 H121 SING N N 51 A1EX4 C03 H031 SING N N 52 A1EX4 C03 H032 SING N N 53 A1EX4 C05 H051 SING N N 54 A1EX4 C06 H061 SING N N 55 A1EX4 C09 H091 SING N N 56 A1EX4 C10 H101 SING N N 57 A1EX4 C17 H171 SING N N 58 A1EX4 C18 H181 SING N N 59 A1EX4 C19 H191 SING N N 60 A1EX4 C20 H202 SING N N 61 A1EX4 C20 H201 SING N N 62 A1EX4 C29 H291 SING N N 63 A1EX4 C30 H301 SING N N 64 A1EX4 N01 H1 SING N N 65 A1EX4 N01 H011 SING N N 66 A1EX4 N13 H131 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EX4 InChI InChI 1.06 "InChI=1S/C27H26F2N6O/c28-26(29)35-10-7-21-23(32-16-33-24(21)35)34-11-8-27(30,9-12-34)14-17-1-3-18(4-2-17)19-5-6-20-15-31-25(36)22(20)13-19/h1-7,10,13,16,26H,8-9,11-12,14-15,30H2,(H,31,36)" A1EX4 InChIKey InChI 1.06 HQSVELHDBFWNEK-UHFFFAOYSA-N A1EX4 SMILES_CANONICAL CACTVS 3.385 "NC1(CCN(CC1)c2ncnc3n(ccc23)C(F)F)Cc4ccc(cc4)c5ccc6CNC(=O)c6c5" A1EX4 SMILES CACTVS 3.385 "NC1(CCN(CC1)c2ncnc3n(ccc23)C(F)F)Cc4ccc(cc4)c5ccc6CNC(=O)c6c5" A1EX4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC2(CCN(CC2)c3c4ccn(c4ncn3)C(F)F)N)c5ccc6c(c5)C(=O)NC6" A1EX4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC2(CCN(CC2)c3c4ccn(c4ncn3)C(F)F)N)c5ccc6c(c5)C(=O)NC6" # _pdbx_chem_comp_identifier.comp_id A1EX4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[4-[[4-azanyl-1-[7-[bis(fluoranyl)methyl]pyrrolo[2,3-d]pyrimidin-4-yl]piperidin-4-yl]methyl]phenyl]-2,3-dihydroisoindol-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EX4 "Create component" 2025-09-12 PDBC A1EX4 "Initial release" 2026-04-29 RCSB #