data_A1EX6 # _chem_comp.id A1EX6 _chem_comp.name "(4~{a}~{S},7~{S},7~{a}~{R})-4,7-dimethyl-5,6,7,7~{a}-tetrahydro-4~{a}~{H}-cyclopenta[c]pyran-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "nepetalactone cis-trans-form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-13 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 166.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EX6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WPG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EX6 C01 C1 C 0 1 N N N N N N 139.406 160.565 133.697 2.746 1.150 0.396 C01 A1EX6 1 A1EX6 C02 C2 C 0 1 N N S N N N 138.956 161.550 134.775 1.264 0.808 0.561 C02 A1EX6 2 A1EX6 C03 C3 C 0 1 N N N N N N 139.436 161.168 136.001 0.424 2.097 0.555 C03 A1EX6 3 A1EX6 C04 C4 C 0 1 N N N N N N 139.544 162.542 136.816 -0.521 2.002 -0.659 C04 A1EX6 4 A1EX6 C05 C5 C 0 1 N N S N N N 139.671 163.681 135.706 -0.631 0.487 -0.951 C05 A1EX6 5 A1EX6 C06 C6 C 0 1 N N R N N N 139.630 163.018 134.498 0.784 -0.042 -0.629 C06 A1EX6 6 A1EX6 C07 C7 C 0 1 N N N N N N 138.967 163.901 133.238 0.663 -1.484 -0.192 C07 A1EX6 7 A1EX6 C10 C8 C 0 1 N N N N N N 137.554 165.019 134.900 -1.400 -1.144 0.751 C10 A1EX6 8 A1EX6 C11 C9 C 0 1 N N N N N N 138.468 164.546 136.013 -1.638 -0.120 -0.021 C11 A1EX6 9 A1EX6 C12 C10 C 0 1 N N N N N N 138.425 165.294 137.343 -3.015 0.491 0.024 C12 A1EX6 10 A1EX6 O08 O1 O 0 1 N N N N N N 139.448 163.940 132.160 1.318 -2.353 -0.717 O08 A1EX6 11 A1EX6 O09 O2 O 0 1 N N N N N N 137.772 164.590 133.571 -0.199 -1.767 0.805 O09 A1EX6 12 A1EX6 H011 H1 H 0 0 N N N N N N 138.952 159.581 133.886 3.072 1.769 1.232 H011 A1EX6 13 A1EX6 H013 H2 H 0 0 N N N N N N 139.088 160.932 132.710 3.330 0.230 0.375 H013 A1EX6 14 A1EX6 H012 H3 H 0 0 N N N N N N 140.502 160.473 133.719 2.892 1.694 -0.538 H012 A1EX6 15 A1EX6 H021 H4 H 0 0 N N N N N N 137.861 161.654 134.762 1.108 0.267 1.494 H021 A1EX6 16 A1EX6 H032 H5 H 0 0 N N N N N N 138.740 160.473 136.495 -0.156 2.169 1.475 H032 A1EX6 17 A1EX6 H031 H6 H 0 0 N N N N N N 140.423 160.692 135.904 1.074 2.966 0.455 H031 A1EX6 18 A1EX6 H041 H7 H 0 0 N N N N N N 140.432 162.536 137.465 -1.500 2.414 -0.412 H041 A1EX6 19 A1EX6 H042 H8 H 0 0 N N N N N N 138.643 162.699 137.428 -0.095 2.526 -1.515 H042 A1EX6 20 A1EX6 H051 H9 H 0 0 N N N N N N 140.605 164.243 135.856 -0.901 0.306 -1.991 H051 A1EX6 21 A1EX6 H061 H10 H 0 0 N N N N N N 140.663 162.808 134.185 1.449 0.066 -1.485 H061 A1EX6 22 A1EX6 H101 H11 H 0 0 N N N N N N 136.734 165.686 135.123 -2.199 -1.513 1.377 H101 A1EX6 23 A1EX6 H122 H14 H 0 0 N N N N N N 139.138 164.837 138.045 -3.654 0.004 -0.713 H122 A1EX6 24 A1EX6 H121 H15 H 0 0 N N N N N N 138.695 166.348 137.180 -3.440 0.357 1.019 H121 A1EX6 25 A1EX6 H123 H16 H 0 0 N N N N N N 137.410 165.237 137.763 -2.947 1.556 -0.201 H123 A1EX6 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EX6 O08 C07 DOUB N N 1 A1EX6 C07 O09 SING N N 2 A1EX6 C07 C06 SING N N 3 A1EX6 O09 C10 SING N N 4 A1EX6 C01 C02 SING N N 5 A1EX6 C06 C02 SING N N 6 A1EX6 C06 C05 SING N N 7 A1EX6 C02 C03 SING N N 8 A1EX6 C10 C11 DOUB N N 9 A1EX6 C05 C11 SING N N 10 A1EX6 C05 C04 SING N N 11 A1EX6 C03 C04 SING N N 12 A1EX6 C11 C12 SING N N 13 A1EX6 C01 H011 SING N N 14 A1EX6 C01 H013 SING N N 15 A1EX6 C01 H012 SING N N 16 A1EX6 C02 H021 SING N N 17 A1EX6 C03 H032 SING N N 18 A1EX6 C03 H031 SING N N 19 A1EX6 C04 H041 SING N N 20 A1EX6 C04 H042 SING N N 21 A1EX6 C05 H051 SING N N 22 A1EX6 C06 H061 SING N N 23 A1EX6 C10 H101 SING N N 24 A1EX6 C12 H122 SING N N 25 A1EX6 C12 H121 SING N N 26 A1EX6 C12 H123 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EX6 InChI InChI 1.06 "InChI=1S/C10H14O2/c1-6-3-4-8-7(2)5-12-10(11)9(6)8/h5-6,8-9H,3-4H2,1-2H3/t6-,8+,9+/m0/s1" A1EX6 InChIKey InChI 1.06 ZDKZHVNKFOXMND-NBEYISGCSA-N A1EX6 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC[C@H]2[C@@H]1C(=O)OC=C2C" A1EX6 SMILES CACTVS 3.385 "C[CH]1CC[CH]2[CH]1C(=O)OC=C2C" A1EX6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CC[C@H]2[C@@H]1C(=O)OC=C2C" A1EX6 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC2C1C(=O)OC=C2C" # _pdbx_chem_comp_identifier.comp_id A1EX6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{a}~{S},7~{S},7~{a}~{R})-4,7-dimethyl-5,6,7,7~{a}-tetrahydro-4~{a}~{H}-cyclopenta[c]pyran-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EX6 "Create component" 2025-09-13 PDBC A1EX6 "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1EX6 _pdbx_chem_comp_synonyms.name "nepetalactone cis-trans-form" _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #