data_A1EX9 # _chem_comp.id A1EX9 _chem_comp.name "~{N}-(1-benzothiophen-2-ylmethyl)-~{N}-[(1~{S})-3,3-bis(fluoranyl)cyclopentyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 F2 N O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-16 _chem_comp.pdbx_modified_date 2026-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.374 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EX9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WNN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EX9 C1 C1 C 0 1 N N N N N N 10.019 -2.493 28.973 -3.987 0.964 -0.164 C1 A1EX9 1 A1EX9 C10 C2 C 0 1 Y N N N N N 4.376 -5.275 26.255 3.503 -0.276 -0.279 C10 A1EX9 2 A1EX9 C11 C3 C 0 1 Y N N N N N 4.868 -6.114 25.249 3.100 0.829 0.477 C11 A1EX9 3 A1EX9 C12 C4 C 0 1 Y N N N N N 6.213 -6.603 25.587 1.846 0.582 1.169 C12 A1EX9 4 A1EX9 C13 C5 C 0 1 Y N N N N N 3.124 -4.679 26.149 4.691 -0.218 -1.014 C13 A1EX9 5 A1EX9 C14 C6 C 0 1 Y N N N N N 2.369 -4.939 25.014 5.462 0.920 -0.993 C14 A1EX9 6 A1EX9 C15 C7 C 0 1 Y N N N N N 2.849 -5.772 24.011 5.065 2.018 -0.243 C15 A1EX9 7 A1EX9 C16 C8 C 0 1 Y N N N N N 4.100 -6.364 24.117 3.911 1.984 0.479 C16 A1EX9 8 A1EX9 C17 C9 C 0 1 N N N N N N 9.845 -5.576 25.494 -1.515 -1.728 -0.197 C17 A1EX9 9 A1EX9 C18 C10 C 0 1 N N N N N N 9.345 -6.743 24.674 -0.931 -3.117 -0.159 C18 A1EX9 10 A1EX9 C2 C11 C 0 1 N N N N N N 9.773 -3.986 28.751 -3.204 0.393 1.036 C2 A1EX9 11 A1EX9 C3 C12 C 0 1 N N S N N N 9.621 -3.992 27.244 -1.711 0.532 0.693 C3 A1EX9 12 A1EX9 C4 C13 C 0 1 N N N N N N 8.699 -2.809 27.009 -1.638 1.183 -0.703 C4 A1EX9 13 A1EX9 C5 C14 C 0 1 N N N N N N 9.478 -1.766 27.773 -2.986 1.931 -0.844 C5 A1EX9 14 A1EX9 C7 C15 C 0 1 N N N N N N 8.147 -6.052 27.291 0.032 -1.089 1.574 C7 A1EX9 15 A1EX9 C8 C16 C 0 1 Y N N N N N 6.780 -6.034 26.696 1.324 -0.611 0.964 C8 A1EX9 16 A1EX9 F20 F1 F 0 1 N N N N N N 11.334 -2.232 29.109 -5.118 1.660 0.276 F20 A1EX9 17 A1EX9 F21 F2 F 0 1 N N N N N N 9.436 -2.039 30.097 -4.352 -0.061 -1.043 F21 A1EX9 18 A1EX9 N6 N1 N 0 1 N N N N N N 9.194 -5.256 26.638 -1.077 -0.789 0.665 N6 A1EX9 19 A1EX9 O19 O1 O 0 1 N N N N N N 10.816 -4.935 25.118 -2.379 -1.455 -1.003 O19 A1EX9 20 A1EX9 S9 S1 S 0 1 Y N N N N N 5.553 -5.136 27.529 2.321 -1.568 -0.115 S9 A1EX9 21 A1EX9 H10 H1 H 0 1 N N N N N N 6.718 -7.357 25.002 1.377 1.320 1.803 H10 A1EX9 22 A1EX9 H11 H2 H 0 1 N N N N N N 2.750 -4.032 26.928 5.004 -1.070 -1.599 H11 A1EX9 23 A1EX9 H12 H3 H 0 1 N N N N N N 1.394 -4.487 24.909 6.379 0.959 -1.562 H12 A1EX9 24 A1EX9 H13 H4 H 0 1 N N N N N N 2.241 -5.961 23.138 5.676 2.908 -0.232 H13 A1EX9 25 A1EX9 H14 H5 H 0 1 N N N N N N 4.471 -7.008 23.333 3.615 2.847 1.057 H14 A1EX9 26 A1EX9 H15 H6 H 0 1 N N N N N N 9.976 -6.862 23.781 -1.450 -3.749 -0.879 H15 A1EX9 27 A1EX9 H16 H7 H 0 1 N N N N N N 9.389 -7.661 25.278 0.128 -3.072 -0.412 H16 A1EX9 28 A1EX9 H17 H8 H 0 1 N N N N N N 8.306 -6.556 24.366 -1.049 -3.533 0.841 H17 A1EX9 29 A1EX9 H1 H9 H 0 1 N N N N N N 10.627 -4.596 29.080 -3.435 0.961 1.937 H1 A1EX9 30 A1EX9 H2 H10 H 0 1 N N N N N N 8.859 -4.331 29.257 -3.458 -0.657 1.182 H2 A1EX9 31 A1EX9 H3 H11 H 0 1 N N N N N N 10.600 -3.729 26.818 -1.216 1.168 1.428 H3 A1EX9 32 A1EX9 H4 H12 H 0 1 N N N N N N 8.608 -2.560 25.942 -0.805 1.884 -0.754 H4 A1EX9 33 A1EX9 H5 H13 H 0 1 N N N N N N 7.698 -2.973 27.434 -1.543 0.419 -1.475 H5 A1EX9 34 A1EX9 H6 H14 H 0 1 N N N N N N 10.299 -1.368 27.158 -3.241 2.075 -1.894 H6 A1EX9 35 A1EX9 H7 H15 H 0 1 N N N N N N 8.820 -0.941 28.084 -2.954 2.886 -0.319 H7 A1EX9 36 A1EX9 H8 H16 H 0 1 N N N N N N 8.487 -7.098 27.297 0.084 -2.165 1.740 H8 A1EX9 37 A1EX9 H9 H17 H 0 1 N N N N N N 8.058 -5.689 28.326 -0.131 -0.582 2.525 H9 A1EX9 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EX9 C1 C2 SING N N 1 A1EX9 C2 C3 SING N N 2 A1EX9 C3 C4 SING N N 3 A1EX9 C4 C5 SING N N 4 A1EX9 C1 C5 SING N N 5 A1EX9 C3 N6 SING N N 6 A1EX9 N6 C7 SING N N 7 A1EX9 C7 C8 SING N N 8 A1EX9 C8 S9 SING Y N 9 A1EX9 S9 C10 SING Y N 10 A1EX9 C10 C11 DOUB Y N 11 A1EX9 C11 C12 SING Y N 12 A1EX9 C8 C12 DOUB Y N 13 A1EX9 C10 C13 SING Y N 14 A1EX9 C13 C14 DOUB Y N 15 A1EX9 C14 C15 SING Y N 16 A1EX9 C15 C16 DOUB Y N 17 A1EX9 C11 C16 SING Y N 18 A1EX9 N6 C17 SING N N 19 A1EX9 C17 C18 SING N N 20 A1EX9 C17 O19 DOUB N N 21 A1EX9 C1 F20 SING N N 22 A1EX9 C1 F21 SING N N 23 A1EX9 C12 H10 SING N N 24 A1EX9 C13 H11 SING N N 25 A1EX9 C14 H12 SING N N 26 A1EX9 C15 H13 SING N N 27 A1EX9 C16 H14 SING N N 28 A1EX9 C18 H15 SING N N 29 A1EX9 C18 H16 SING N N 30 A1EX9 C18 H17 SING N N 31 A1EX9 C2 H1 SING N N 32 A1EX9 C2 H2 SING N N 33 A1EX9 C3 H3 SING N N 34 A1EX9 C4 H4 SING N N 35 A1EX9 C4 H5 SING N N 36 A1EX9 C5 H6 SING N N 37 A1EX9 C5 H7 SING N N 38 A1EX9 C7 H8 SING N N 39 A1EX9 C7 H9 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EX9 InChI InChI 1.06 "InChI=1S/C16H17F2NOS/c1-11(20)19(13-6-7-16(17,18)9-13)10-14-8-12-4-2-3-5-15(12)21-14/h2-5,8,13H,6-7,9-10H2,1H3/t13-/m0/s1" A1EX9 InChIKey InChI 1.06 PIUILLOBFLWNAD-ZDUSSCGKSA-N A1EX9 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N(Cc1sc2ccccc2c1)[C@H]3CCC(F)(F)C3" A1EX9 SMILES CACTVS 3.385 "CC(=O)N(Cc1sc2ccccc2c1)[CH]3CCC(F)(F)C3" A1EX9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N(Cc1cc2ccccc2s1)[C@H]3CCC(C3)(F)F" A1EX9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N(Cc1cc2ccccc2s1)C3CCC(C3)(F)F" # _pdbx_chem_comp_identifier.comp_id A1EX9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(1-benzothiophen-2-ylmethyl)-~{N}-[(1~{S})-3,3-bis(fluoranyl)cyclopentyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EX9 "Create component" 2025-09-16 PDBC A1EX9 "Initial release" 2026-09-09 RCSB #