data_A1EY4 # _chem_comp.id A1EY4 _chem_comp.name "(3~{S})-~{N}-[(~{R})-(4-phenylphenyl)-thiophen-2-yl-methyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-16 _chem_comp.pdbx_modified_date 2025-10-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.514 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EY4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9X55 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EY4 C4 C1 C 0 1 Y N N N N N -5.317 7.732 9.758 6.409 -1.704 1.398 C4 A1EY4 1 A1EY4 C5 C2 C 0 1 Y N N N N N -5.830 9.985 10.391 6.906 -1.130 -0.878 C5 A1EY4 2 A1EY4 C6 C3 C 0 1 Y N N N N N -5.906 8.952 9.473 7.310 -1.618 0.352 C6 A1EY4 3 A1EY4 C7 C4 C 0 1 Y N N N N N -3.839 8.380 13.196 3.283 -0.376 -0.214 C7 A1EY4 4 A1EY4 C8 C5 C 0 1 Y N N N N N -2.667 9.076 13.443 2.871 0.120 -1.449 C8 A1EY4 5 A1EY4 C10 C6 C 0 1 Y N N N N N -2.000 8.902 14.644 1.564 0.525 -1.626 C10 A1EY4 6 A1EY4 C13 C7 C 0 1 N N R N N N -1.772 7.843 16.926 -0.764 0.884 -0.780 C13 A1EY4 7 A1EY4 C15 C8 C 0 1 Y N N N N N -2.459 10.315 17.502 -0.952 3.397 -0.916 C15 A1EY4 8 A1EY4 C17 C9 C 0 1 Y N N N N N -2.543 11.243 18.588 -1.134 4.550 -0.173 C17 A1EY4 9 A1EY4 C20 C10 C 0 1 N N N N N N 0.132 6.292 16.749 -2.939 -0.181 -0.516 C20 A1EY4 10 A1EY4 C22 C11 C 0 1 N N S N N N 1.617 5.915 16.473 -3.867 -1.140 0.186 C22 A1EY4 11 A1EY4 C24 C12 C 0 1 N N N N N N 1.706 4.451 16.781 -5.244 -1.099 -0.482 C24 A1EY4 12 A1EY4 C26 C13 C 0 1 N N N N N N 1.910 3.531 15.636 -6.162 -2.119 0.198 C26 A1EY4 13 A1EY4 C1 C14 C 0 1 Y N N N N N -4.573 8.576 11.872 4.689 -0.807 -0.016 C1 A1EY4 14 A1EY4 C11 C15 C 0 1 Y N N N N N -3.681 7.336 15.350 1.066 -0.053 0.648 C11 A1EY4 15 A1EY4 C12 C16 C 0 1 Y N N N N N -2.510 8.037 15.600 0.663 0.440 -0.580 C12 A1EY4 16 A1EY4 C14 C17 C 0 1 Y N N N N N -1.976 9.043 17.850 -0.944 2.266 -0.208 C14 A1EY4 17 A1EY4 C18 C18 C 0 1 Y N N N N N -2.126 10.711 19.820 -1.274 4.356 1.140 C18 A1EY4 18 A1EY4 C2 C19 C 0 1 Y N N N N N -4.647 7.543 10.955 5.100 -1.304 1.219 C2 A1EY4 19 A1EY4 C23 C20 C 0 1 N N N N N N 1.967 6.383 15.039 -3.301 -2.559 0.092 C23 A1EY4 20 A1EY4 C27 C21 C 0 1 N N N N N N 1.393 4.100 14.311 -5.530 -3.510 0.104 C27 A1EY4 21 A1EY4 C3 C22 C 0 1 Y N N N N N -5.163 9.797 11.590 5.599 -0.727 -1.067 C3 A1EY4 22 A1EY4 C9 C23 C 0 1 Y N N N N N -4.348 7.510 14.147 2.371 -0.461 0.836 C9 A1EY4 23 A1EY4 N19 N1 N 0 1 N N N N N N -0.359 7.651 16.648 -1.665 -0.048 -0.097 N19 A1EY4 24 A1EY4 N25 N2 N 0 1 N N N N N N 2.135 5.344 13.994 -4.215 -3.496 0.757 N25 A1EY4 25 A1EY4 O21 O1 O 0 1 N N N N N N -0.625 5.434 17.048 -3.340 0.470 -1.457 O21 A1EY4 26 A1EY4 S16 S1 S 0 1 Y N N N N N -1.670 9.111 19.513 -1.176 2.637 1.496 S16 A1EY4 27 A1EY4 H1 H1 H 0 1 N N N N N N -5.380 6.924 9.044 6.729 -2.089 2.355 H1 A1EY4 28 A1EY4 H2 H2 H 0 1 N N N N N N -6.291 10.937 10.172 7.612 -1.069 -1.692 H2 A1EY4 29 A1EY4 H3 H3 H 0 1 N N N N N N -6.424 9.097 8.536 8.333 -1.932 0.496 H3 A1EY4 30 A1EY4 H4 H4 H 0 1 N N N N N N -2.274 9.754 12.700 3.574 0.188 -2.266 H4 A1EY4 31 A1EY4 H5 H5 H 0 1 N N N N N N -1.083 9.440 14.836 1.243 0.910 -2.583 H5 A1EY4 32 A1EY4 H6 H6 H 0 1 N N N N N N -2.174 6.947 17.422 -0.994 0.898 -1.845 H6 A1EY4 33 A1EY4 H7 H7 H 0 1 N N N N N N -2.745 10.573 16.493 -0.831 3.410 -1.989 H7 A1EY4 34 A1EY4 H8 H8 H 0 1 N N N N N N -2.894 12.258 18.472 -1.161 5.532 -0.621 H8 A1EY4 35 A1EY4 H9 H9 H 0 1 N N N N N N 2.250 6.469 17.182 -3.961 -0.853 1.233 H9 A1EY4 36 A1EY4 H10 H10 H 0 1 N N N N N N 0.769 4.159 17.278 -5.669 -0.101 -0.380 H10 A1EY4 37 A1EY4 H11 H11 H 0 1 N N N N N N 2.548 4.309 17.474 -5.144 -1.346 -1.539 H11 A1EY4 38 A1EY4 H12 H12 H 0 1 N N N N N N 1.380 2.590 15.844 -6.293 -1.849 1.246 H12 A1EY4 39 A1EY4 H13 H13 H 0 1 N N N N N N 2.987 3.331 15.535 -7.132 -2.125 -0.300 H13 A1EY4 40 A1EY4 H14 H14 H 0 1 N N N N N N -4.073 6.656 16.092 0.358 -0.117 1.461 H14 A1EY4 41 A1EY4 H15 H15 H 0 1 N N N N N N -2.102 11.221 20.772 -1.424 5.136 1.871 H15 A1EY4 42 A1EY4 H16 H16 H 0 1 N N N N N N -4.184 6.592 11.172 4.397 -1.375 2.035 H16 A1EY4 43 A1EY4 H17 H17 H 0 1 N N N N N N 2.911 6.944 15.098 -3.194 -2.838 -0.956 H17 A1EY4 44 A1EY4 H18 H18 H 0 1 N N N N N N 1.161 7.055 14.707 -2.327 -2.594 0.579 H18 A1EY4 45 A1EY4 H19 H19 H 0 1 N N N N N N 0.320 4.324 14.400 -6.174 -4.235 0.600 H19 A1EY4 46 A1EY4 H20 H20 H 0 1 N N N N N N 1.548 3.364 13.509 -5.412 -3.785 -0.944 H20 A1EY4 47 A1EY4 H21 H21 H 0 1 N N N N N N -5.103 10.603 12.306 5.284 -0.351 -2.029 H21 A1EY4 48 A1EY4 H22 H22 H 0 1 N N N N N N -5.262 6.969 13.952 2.684 -0.845 1.796 H22 A1EY4 49 A1EY4 H23 H23 H 0 1 N N N N N N 0.240 8.413 16.401 -1.345 -0.569 0.655 H23 A1EY4 50 A1EY4 H24 H24 H 0 1 N N N N N N 3.107 5.126 13.911 -4.301 -3.281 1.740 H24 A1EY4 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EY4 C6 C4 DOUB Y N 1 A1EY4 C6 C5 SING Y N 2 A1EY4 C4 C2 SING Y N 3 A1EY4 C5 C3 DOUB Y N 4 A1EY4 C2 C1 DOUB Y N 5 A1EY4 C3 C1 SING Y N 6 A1EY4 C1 C7 SING N N 7 A1EY4 C7 C8 DOUB Y N 8 A1EY4 C7 C9 SING Y N 9 A1EY4 C8 C10 SING Y N 10 A1EY4 N25 C27 SING N N 11 A1EY4 N25 C23 SING N N 12 A1EY4 C9 C11 DOUB Y N 13 A1EY4 C27 C26 SING N N 14 A1EY4 C10 C12 DOUB Y N 15 A1EY4 C23 C22 SING N N 16 A1EY4 C11 C12 SING Y N 17 A1EY4 C12 C13 SING N N 18 A1EY4 C26 C24 SING N N 19 A1EY4 C22 C20 SING N N 20 A1EY4 C22 C24 SING N N 21 A1EY4 N19 C20 SING N N 22 A1EY4 N19 C13 SING N N 23 A1EY4 C20 O21 DOUB N N 24 A1EY4 C13 C14 SING N N 25 A1EY4 C15 C14 DOUB Y N 26 A1EY4 C15 C17 SING Y N 27 A1EY4 C14 S16 SING Y N 28 A1EY4 C17 C18 DOUB Y N 29 A1EY4 S16 C18 SING Y N 30 A1EY4 C4 H1 SING N N 31 A1EY4 C5 H2 SING N N 32 A1EY4 C6 H3 SING N N 33 A1EY4 C8 H4 SING N N 34 A1EY4 C10 H5 SING N N 35 A1EY4 C13 H6 SING N N 36 A1EY4 C15 H7 SING N N 37 A1EY4 C17 H8 SING N N 38 A1EY4 C22 H9 SING N N 39 A1EY4 C24 H10 SING N N 40 A1EY4 C24 H11 SING N N 41 A1EY4 C26 H12 SING N N 42 A1EY4 C26 H13 SING N N 43 A1EY4 C11 H14 SING N N 44 A1EY4 C18 H15 SING N N 45 A1EY4 C2 H16 SING N N 46 A1EY4 C23 H17 SING N N 47 A1EY4 C23 H18 SING N N 48 A1EY4 C27 H19 SING N N 49 A1EY4 C27 H20 SING N N 50 A1EY4 C3 H21 SING N N 51 A1EY4 C9 H22 SING N N 52 A1EY4 N19 H23 SING N N 53 A1EY4 N25 H24 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EY4 InChI InChI 1.06 "InChI=1S/C23H24N2OS/c26-23(20-8-4-14-24-16-20)25-22(21-9-5-15-27-21)19-12-10-18(11-13-19)17-6-2-1-3-7-17/h1-3,5-7,9-13,15,20,22,24H,4,8,14,16H2,(H,25,26)/t20-,22+/m0/s1" A1EY4 InChIKey InChI 1.06 ZEHKTRSFTWNPFP-RBBKRZOGSA-N A1EY4 SMILES_CANONICAL CACTVS 3.385 "O=C(N[C@@H](c1sccc1)c2ccc(cc2)c3ccccc3)[C@H]4CCCNC4" A1EY4 SMILES CACTVS 3.385 "O=C(N[CH](c1sccc1)c2ccc(cc2)c3ccccc3)[CH]4CCCNC4" A1EY4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)[C@H](c3cccs3)NC(=O)[C@H]4CCCNC4" A1EY4 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)C(c3cccs3)NC(=O)C4CCCNC4" # _pdbx_chem_comp_identifier.comp_id A1EY4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-~{N}-[(~{R})-(4-phenylphenyl)-thiophen-2-yl-methyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EY4 "Create component" 2025-10-16 PDBC A1EY4 "Initial release" 2025-10-29 RCSB #