data_A1EY5 # _chem_comp.id A1EY5 _chem_comp.name "(3~{R})-~{N}-[2-oxidanylidene-2-[[(~{R})-(4-phenylphenyl)-thiophen-2-yl-methyl]amino]ethyl]pyrrolidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-16 _chem_comp.pdbx_modified_date 2025-10-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 419.539 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EY5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9X54 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EY5 C4 C1 C 0 1 Y N N N N N -5.372 7.851 9.883 7.352 -2.389 1.428 C4 A1EY5 1 A1EY5 C5 C2 C 0 1 Y N N N N N -5.612 10.232 10.144 7.771 -2.187 -0.925 C5 A1EY5 2 A1EY5 C6 C3 C 0 1 Y N N N N N -5.788 9.078 9.389 8.183 -2.572 0.338 C6 A1EY5 3 A1EY5 C7 C4 C 0 1 Y N N N N N -3.931 8.805 13.237 4.347 -0.814 -0.194 C7 A1EY5 4 A1EY5 C8 C5 C 0 1 Y N N N N N -2.849 9.623 13.528 3.929 -0.420 -1.463 C8 A1EY5 5 A1EY5 C10 C6 C 0 1 Y N N N N N -2.200 9.501 14.753 2.684 0.154 -1.629 C10 A1EY5 6 A1EY5 C13 C7 C 0 1 N N R N N N -1.954 8.400 17.023 0.496 0.964 -0.726 C13 A1EY5 7 A1EY5 C15 C8 C 0 1 Y N N N N N -2.214 9.563 17.983 0.556 2.419 -0.336 C15 A1EY5 8 A1EY5 C17 C9 C 0 1 Y N N N N N -2.668 10.848 17.667 0.658 3.440 -1.189 C17 A1EY5 9 A1EY5 C20 C10 C 0 1 N N N N N N 0.193 7.109 16.896 -1.788 0.283 -0.218 C20 A1EY5 10 A1EY5 C22 C11 C 0 1 N N N N N N 1.712 7.196 16.765 -2.794 -0.428 0.650 C22 A1EY5 11 A1EY5 C24 C12 C 0 1 N N N N N N 2.271 5.706 14.874 -5.197 -0.826 0.686 C24 A1EY5 12 A1EY5 C26 C13 C 0 1 N N R N N N 2.956 4.370 14.275 -6.574 -0.663 0.095 C26 A1EY5 13 A1EY5 C28 C14 C 0 1 N N N N N N 1.980 3.120 14.502 -6.631 -1.293 -1.309 C28 A1EY5 14 A1EY5 C1 C15 C 0 1 Y N N N N N -4.610 8.929 11.885 5.687 -1.426 -0.008 C1 A1EY5 15 A1EY5 C11 C16 C 0 1 Y N N N N N -3.726 7.735 15.366 2.264 -0.053 0.724 C11 A1EY5 16 A1EY5 C12 C17 C 0 1 Y N N N N N -2.650 8.563 15.671 1.854 0.337 -0.538 C12 A1EY5 17 A1EY5 C18 C18 C 0 1 Y N N N N N -2.450 11.135 20.027 0.626 4.686 0.734 C18 A1EY5 18 A1EY5 C19 C19 C 0 1 Y N N N N N -2.809 11.724 18.791 0.696 4.691 -0.598 C19 A1EY5 19 A1EY5 C2 C20 C 0 1 Y N N N N N -4.772 7.775 11.129 6.105 -1.820 1.261 C2 A1EY5 20 A1EY5 C27 C21 C 0 1 N N N N N N 3.103 4.473 13.015 -7.613 -1.445 0.932 C27 A1EY5 21 A1EY5 C29 C22 C 0 1 N N N N N N 3.062 2.910 12.475 -8.554 -2.036 -0.148 C29 A1EY5 22 A1EY5 C3 C23 C 0 1 Y N N N N N -5.016 10.165 11.398 6.526 -1.617 -1.103 C3 A1EY5 23 A1EY5 C9 C24 C 0 1 Y N N N N N -4.368 7.855 14.143 3.506 -0.627 0.901 C9 A1EY5 24 A1EY5 N14 N1 N 0 1 N N N N N N -0.518 8.361 16.867 -0.482 0.273 0.117 N14 A1EY5 25 A1EY5 N23 N2 N 0 1 N N N N N N 2.322 5.974 16.287 -4.132 -0.270 0.076 N23 A1EY5 26 A1EY5 N30 N3 N 0 1 N N N N N N 2.277 2.222 13.305 -7.624 -2.388 -1.252 N30 A1EY5 27 A1EY5 O21 O1 O 0 1 N N N N N N -0.397 6.082 17.015 -2.152 0.865 -1.217 O21 A1EY5 28 A1EY5 O25 O2 O 0 1 N N N N N N 1.725 6.475 14.156 -5.048 -1.457 1.711 O25 A1EY5 29 A1EY5 S16 S1 S 0 1 Y N N N N N -1.972 9.553 19.667 0.496 3.030 1.312 S16 A1EY5 30 A1EY5 H1 H1 H 0 1 N N N N N N -5.516 6.955 9.297 7.677 -2.695 2.411 H1 A1EY5 31 A1EY5 H2 H2 H 0 1 N N N N N N -5.940 11.185 9.755 8.422 -2.335 -1.773 H2 A1EY5 32 A1EY5 H3 H3 H 0 1 N N N N N N -6.250 9.137 8.415 9.157 -3.017 0.473 H3 A1EY5 33 A1EY5 H4 H4 H 0 1 N N N N N N -2.511 10.352 12.806 4.577 -0.562 -2.315 H4 A1EY5 34 A1EY5 H5 H5 H 0 1 N N N N N N -1.354 10.130 14.987 2.359 0.460 -2.612 H5 A1EY5 35 A1EY5 H6 H6 H 0 1 N N N N N N -2.305 7.469 17.492 0.198 0.880 -1.771 H6 A1EY5 36 A1EY5 H7 H7 H 0 1 N N N N N N -2.894 11.155 16.656 0.706 3.300 -2.259 H7 A1EY5 37 A1EY5 H8 H8 H 0 1 N N N N N N 2.134 7.432 17.753 -2.544 -1.488 0.702 H8 A1EY5 38 A1EY5 H9 H9 H 0 1 N N N N N N 1.955 8.005 16.060 -2.776 -0.001 1.653 H9 A1EY5 39 A1EY5 H10 H10 H 0 1 N N N N N N 3.895 4.186 14.817 -6.842 0.393 0.047 H10 A1EY5 40 A1EY5 H11 H11 H 0 1 N N N N N N 0.927 3.438 14.505 -6.943 -0.546 -2.039 H11 A1EY5 41 A1EY5 H12 H12 H 0 1 N N N N N N 2.211 2.606 15.447 -5.652 -1.689 -1.578 H12 A1EY5 42 A1EY5 H13 H13 H 0 1 N N N N N N -4.061 6.999 16.082 1.611 0.093 1.572 H13 A1EY5 43 A1EY5 H14 H14 H 0 1 N N N N N N -2.476 11.601 21.001 0.642 5.565 1.361 H14 A1EY5 44 A1EY5 H15 H15 H 0 1 N N N N N N -3.158 12.742 18.704 0.777 5.602 -1.172 H15 A1EY5 45 A1EY5 H16 H16 H 0 1 N N N N N N -4.432 6.824 11.511 5.455 -1.682 2.113 H16 A1EY5 46 A1EY5 H17 H17 H 0 1 N N N N N N 4.066 4.945 12.772 -7.130 -2.240 1.500 H17 A1EY5 47 A1EY5 H18 H18 H 0 1 N N N N N N 2.285 5.060 12.573 -8.157 -0.774 1.596 H18 A1EY5 48 A1EY5 H19 H19 H 0 1 N N N N N N 2.652 2.875 11.455 -9.060 -2.925 0.227 H19 A1EY5 49 A1EY5 H20 H20 H 0 1 N N N N N N 4.076 2.485 12.478 -9.277 -1.290 -0.478 H20 A1EY5 50 A1EY5 H21 H21 H 0 1 N N N N N N -4.871 11.060 11.985 6.203 -1.320 -2.090 H21 A1EY5 51 A1EY5 H22 H22 H 0 1 N N N N N N -5.202 7.213 13.900 3.825 -0.932 1.887 H22 A1EY5 52 A1EY5 H23 H23 H 0 1 N N N N N N -0.012 9.214 16.737 -0.190 -0.193 0.917 H23 A1EY5 53 A1EY5 H24 H24 H 0 1 N N N N N N 2.764 5.337 16.918 -4.252 0.235 -0.744 H24 A1EY5 54 A1EY5 H25 H25 H 0 1 N N N N N N 1.425 1.975 12.843 -7.175 -3.275 -1.078 H25 A1EY5 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EY5 C6 C4 DOUB Y N 1 A1EY5 C6 C5 SING Y N 2 A1EY5 C4 C2 SING Y N 3 A1EY5 C5 C3 DOUB Y N 4 A1EY5 C2 C1 DOUB Y N 5 A1EY5 C3 C1 SING Y N 6 A1EY5 C1 C7 SING N N 7 A1EY5 C29 C27 SING N N 8 A1EY5 C29 N30 SING N N 9 A1EY5 C27 C26 SING N N 10 A1EY5 C7 C8 DOUB Y N 11 A1EY5 C7 C9 SING Y N 12 A1EY5 N30 C28 SING N N 13 A1EY5 C8 C10 SING Y N 14 A1EY5 C9 C11 DOUB Y N 15 A1EY5 O25 C24 DOUB N N 16 A1EY5 C26 C28 SING N N 17 A1EY5 C26 C24 SING N N 18 A1EY5 C10 C12 DOUB Y N 19 A1EY5 C24 N23 SING N N 20 A1EY5 C11 C12 SING Y N 21 A1EY5 C12 C13 SING N N 22 A1EY5 N23 C22 SING N N 23 A1EY5 C22 C20 SING N N 24 A1EY5 N14 C20 SING N N 25 A1EY5 N14 C13 SING N N 26 A1EY5 C20 O21 DOUB N N 27 A1EY5 C13 C15 SING N N 28 A1EY5 C17 C15 DOUB Y N 29 A1EY5 C17 C19 SING Y N 30 A1EY5 C15 S16 SING Y N 31 A1EY5 C19 C18 DOUB Y N 32 A1EY5 S16 C18 SING Y N 33 A1EY5 C4 H1 SING N N 34 A1EY5 C5 H2 SING N N 35 A1EY5 C6 H3 SING N N 36 A1EY5 C8 H4 SING N N 37 A1EY5 C10 H5 SING N N 38 A1EY5 C13 H6 SING N N 39 A1EY5 C17 H7 SING N N 40 A1EY5 C22 H8 SING N N 41 A1EY5 C22 H9 SING N N 42 A1EY5 C26 H10 SING N N 43 A1EY5 C28 H11 SING N N 44 A1EY5 C28 H12 SING N N 45 A1EY5 C11 H13 SING N N 46 A1EY5 C18 H14 SING N N 47 A1EY5 C19 H15 SING N N 48 A1EY5 C2 H16 SING N N 49 A1EY5 C27 H17 SING N N 50 A1EY5 C27 H18 SING N N 51 A1EY5 C29 H19 SING N N 52 A1EY5 C29 H20 SING N N 53 A1EY5 C3 H21 SING N N 54 A1EY5 C9 H22 SING N N 55 A1EY5 N14 H23 SING N N 56 A1EY5 N23 H24 SING N N 57 A1EY5 N30 H25 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EY5 InChI InChI 1.06 "InChI=1S/C24H25N3O2S/c28-22(16-26-24(29)20-12-13-25-15-20)27-23(21-7-4-14-30-21)19-10-8-18(9-11-19)17-5-2-1-3-6-17/h1-11,14,20,23,25H,12-13,15-16H2,(H,26,29)(H,27,28)/t20-,23-/m1/s1" A1EY5 InChIKey InChI 1.06 GCXGKCMCRJHICH-NFBKMPQASA-N A1EY5 SMILES_CANONICAL CACTVS 3.385 "O=C(CNC(=O)[C@@H]1CCNC1)N[C@@H](c2sccc2)c3ccc(cc3)c4ccccc4" A1EY5 SMILES CACTVS 3.385 "O=C(CNC(=O)[CH]1CCNC1)N[CH](c2sccc2)c3ccc(cc3)c4ccccc4" A1EY5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)[C@H](c3cccs3)NC(=O)CNC(=O)[C@@H]4CCNC4" A1EY5 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)C(c3cccs3)NC(=O)CNC(=O)C4CCNC4" # _pdbx_chem_comp_identifier.comp_id A1EY5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-~{N}-[2-oxidanylidene-2-[[(~{R})-(4-phenylphenyl)-thiophen-2-yl-methyl]amino]ethyl]pyrrolidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EY5 "Create component" 2025-10-16 PDBC A1EY5 "Initial release" 2025-10-29 RCSB #