data_A1EYP # _chem_comp.id A1EYP _chem_comp.name "(2S)-2-azanyl-6-[[(1S,4R,5S)-4-methyl-5-(nitromethyl)-4-phenyl-cyclohex-2-en-1-yl]amino]hexanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C20 H29 N3 O4" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-23 _chem_comp.pdbx_modified_date 2026-02-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 375.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EYP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WVO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EYP C C1 C 0 1 N N N N Y Y -1.634 -14.760 -1.916 8.133 0.506 -0.193 C A1EYP 1 A1EYP O O1 O 0 1 N N N N Y Y -1.789 -14.338 -3.124 8.878 -0.390 0.125 O A1EYP 2 A1EYP CA C2 C 0 1 N N S N Y N -1.135 -16.075 -1.703 6.797 0.190 -0.814 CA A1EYP 3 A1EYP N N1 N 0 1 N N N Y Y N -1.839 -17.054 -2.402 6.823 -1.171 -1.365 N A1EYP 4 A1EYP CB C3 C 0 1 N N N N N N 0.294 -16.263 -1.718 5.703 0.288 0.252 CB A1EYP 5 A1EYP CG C4 C 0 1 N N N N N N 1.038 -15.360 -0.793 4.335 0.090 -0.402 CG A1EYP 6 A1EYP CD C5 C 0 1 N N N N N N 1.098 -16.226 0.450 3.241 0.188 0.664 CD A1EYP 7 A1EYP CE C6 C 0 1 N N N N N N 2.341 -16.087 1.256 1.872 -0.010 0.010 CE A1EYP 8 A1EYP NZ N2 N 0 1 N N N N N N 2.170 -17.092 2.322 0.822 0.083 1.033 NZ A1EYP 9 A1EYP CAD C7 C 0 1 N N S N N N 2.713 -16.644 3.622 -0.509 -0.102 0.440 CAD A1EYP 10 A1EYP CAE C8 C 0 1 N N N N N N 2.127 -17.392 4.811 -1.474 -0.614 1.511 CAE A1EYP 11 A1EYP CAF C9 C 0 1 N N S N N N 2.875 -18.758 4.834 -2.900 -0.553 0.949 CAF A1EYP 12 A1EYP CAG C10 C 0 1 N N N N N N 2.191 -19.665 5.869 -2.950 -1.269 -0.403 CAG A1EYP 13 A1EYP NAH N3 N 1 1 N N N N N N 1.063 -20.355 5.244 -2.709 -2.701 -0.206 NAH A1EYP 14 A1EYP OAJ O2 O -1 1 N N N N N N 1.313 -21.485 4.377 -1.807 -3.072 0.523 OAJ A1EYP 15 A1EYP OAI O3 O 0 1 N N N N N N -0.102 -20.026 5.543 -3.411 -3.519 -0.772 OAI A1EYP 16 A1EYP CAC C11 C 0 1 N N N N N N 4.115 -16.700 3.598 -0.995 1.207 -0.110 CAC A1EYP 17 A1EYP CAB C12 C 0 1 N N N N N N 4.934 -17.539 4.345 -2.204 1.648 0.028 CAB A1EYP 18 A1EYP CAA C13 C 0 1 N N R N N N 4.431 -18.590 5.113 -3.286 0.916 0.767 CAA A1EYP 19 A1EYP CAK C14 C 0 1 N N N N N N 5.158 -19.795 4.497 -3.488 1.561 2.140 CAK A1EYP 20 A1EYP CAL C15 C 0 1 Y N N N N N 4.756 -18.451 6.528 -4.571 1.002 -0.015 CAL A1EYP 21 A1EYP CAV C16 C 0 1 Y N N N N N 5.042 -17.218 7.116 -4.575 1.565 -1.278 CAV A1EYP 22 A1EYP CAW C17 C 0 1 Y N N N N N 5.343 -17.099 8.475 -5.754 1.644 -1.996 CAW A1EYP 23 A1EYP CAX C18 C 0 1 Y N N N N N 5.392 -18.222 9.281 -6.928 1.159 -1.451 CAX A1EYP 24 A1EYP CAY C19 C 0 1 Y N N N N N 5.145 -19.465 8.740 -6.924 0.596 -0.189 CAY A1EYP 25 A1EYP CAZ C20 C 0 1 Y N N N N N 4.843 -19.575 7.381 -5.745 0.513 0.527 CAZ A1EYP 26 A1EYP HA H4 H 0 1 N N N N Y N -1.398 -16.274 -0.654 6.590 0.902 -1.612 HA A1EYP 27 A1EYP H H5 H 0 1 N N N Y Y N -1.441 -17.951 -2.211 7.013 -1.850 -0.644 H A1EYP 28 A1EYP H2 H6 H 0 1 N N N Y Y N -2.797 -17.046 -2.114 5.960 -1.384 -1.844 H2 A1EYP 29 A1EYP HB2 H8 H 0 1 N N N N N N 0.508 -17.303 -1.432 5.861 -0.484 1.006 HB2 A1EYP 30 A1EYP HB3 H9 H 0 1 N N N N N N 0.655 -16.083 -2.741 5.742 1.270 0.724 HB3 A1EYP 31 A1EYP HG2 H10 H 0 1 N N N N N N 2.043 -15.127 -1.174 4.177 0.862 -1.156 HG2 A1EYP 32 A1EYP HG3 H11 H 0 1 N N N N N N 0.489 -14.424 -0.610 4.296 -0.892 -0.873 HG3 A1EYP 33 A1EYP HD2 H12 H 0 1 N N N N N N 0.244 -15.961 1.091 3.399 -0.584 1.418 HD2 A1EYP 34 A1EYP HD3 H13 H 0 1 N N N N N N 1.010 -17.277 0.138 3.280 1.169 1.136 HD3 A1EYP 35 A1EYP HE2 H14 H 0 1 N N N N N N 3.231 -16.306 0.648 1.715 0.762 -0.744 HE2 A1EYP 36 A1EYP HE3 H15 H 0 1 N N N N N N 2.425 -15.075 1.679 1.833 -0.992 -0.462 HE3 A1EYP 37 A1EYP HZ1 H16 H 0 1 N N N N N N 1.194 -17.280 2.431 0.983 -0.579 1.777 HZ1 A1EYP 38 A1EYP H18 H18 H 0 1 N N N N N N 2.421 -15.591 3.744 -0.446 -0.830 -0.368 H18 A1EYP 39 A1EYP H19 H19 H 0 1 N N N N N N 2.306 -16.837 5.744 -1.225 -1.644 1.767 H19 A1EYP 40 A1EYP H20 H20 H 0 1 N N N N N N 1.046 -17.545 4.677 -1.403 0.014 2.399 H20 A1EYP 41 A1EYP H21 H21 H 0 1 N N N N N N 2.763 -19.222 3.843 -3.589 -1.030 1.645 H21 A1EYP 42 A1EYP H22 H22 H 0 1 N N N N N N 2.914 -20.406 6.241 -3.932 -1.124 -0.854 H22 A1EYP 43 A1EYP H23 H23 H 0 1 N N N N N N 1.827 -19.054 6.708 -2.184 -0.858 -1.060 H23 A1EYP 44 A1EYP H24 H24 H 0 1 N N N N N N 4.612 -16.017 2.926 -0.292 1.819 -0.655 H24 A1EYP 45 A1EYP H25 H25 H 0 1 N N N N N N 6.001 -17.371 4.330 -2.449 2.601 -0.416 H25 A1EYP 46 A1EYP H26 H26 H 0 1 N N N N N N 4.850 -20.714 5.017 -2.562 1.495 2.712 H26 A1EYP 47 A1EYP H27 H27 H 0 1 N N N N N N 4.900 -19.873 3.431 -3.763 2.608 2.013 H27 A1EYP 48 A1EYP H28 H28 H 0 1 N N N N N N 6.245 -19.660 4.602 -4.282 1.039 2.674 H28 A1EYP 49 A1EYP H29 H29 H 0 1 N N N N N N 5.030 -16.329 6.502 -3.658 1.944 -1.703 H29 A1EYP 50 A1EYP H30 H30 H 0 1 N N N N N N 5.538 -16.125 8.899 -5.757 2.085 -2.982 H30 A1EYP 51 A1EYP H31 H31 H 0 1 N N N N N N 5.623 -18.125 10.331 -7.849 1.221 -2.012 H31 A1EYP 52 A1EYP H32 H32 H 0 1 N N N N N N 5.185 -20.347 9.362 -7.842 0.217 0.236 H32 A1EYP 53 A1EYP H33 H33 H 0 1 N N N N N N 4.669 -20.557 6.966 -5.740 0.069 1.511 H33 A1EYP 54 A1EYP OXT OXT O 0 1 N Y N N N Y -2.260 -13.930 -0.863 8.493 1.783 0.012 OXT A1EYP 55 A1EYP H3 H3 H 0 1 N Y N N N N -2.695 -13.186 -1.263 9.360 1.936 0.413 H3 A1EYP 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EYP O C DOUB N N 1 A1EYP N CA SING N N 2 A1EYP C CA SING N N 3 A1EYP CB CA SING N N 4 A1EYP CB CG SING N N 5 A1EYP CG CD SING N N 6 A1EYP CD CE SING N N 7 A1EYP CE NZ SING N N 8 A1EYP NZ CAD SING N N 9 A1EYP CAC CAD SING N N 10 A1EYP CAC CAB DOUB N N 11 A1EYP CAD CAE SING N N 12 A1EYP CAB CAA SING N N 13 A1EYP OAJ NAH SING N N 14 A1EYP CAK CAA SING N N 15 A1EYP CAE CAF SING N N 16 A1EYP CAF CAA SING N N 17 A1EYP CAF CAG SING N N 18 A1EYP CAA CAL SING N N 19 A1EYP NAH OAI DOUB N N 20 A1EYP NAH CAG SING N N 21 A1EYP CAL CAV DOUB Y N 22 A1EYP CAL CAZ SING Y N 23 A1EYP CAV CAW SING Y N 24 A1EYP CAZ CAY DOUB Y N 25 A1EYP CAW CAX DOUB Y N 26 A1EYP CAY CAX SING Y N 27 A1EYP CA HA SING N N 28 A1EYP N H SING N N 29 A1EYP N H2 SING N N 30 A1EYP CB HB2 SING N N 31 A1EYP CB HB3 SING N N 32 A1EYP CG HG2 SING N N 33 A1EYP CG HG3 SING N N 34 A1EYP CD HD2 SING N N 35 A1EYP CD HD3 SING N N 36 A1EYP CE HE2 SING N N 37 A1EYP CE HE3 SING N N 38 A1EYP NZ HZ1 SING N N 39 A1EYP CAD H18 SING N N 40 A1EYP CAE H19 SING N N 41 A1EYP CAE H20 SING N N 42 A1EYP CAF H21 SING N N 43 A1EYP CAG H22 SING N N 44 A1EYP CAG H23 SING N N 45 A1EYP CAC H24 SING N N 46 A1EYP CAB H25 SING N N 47 A1EYP CAK H26 SING N N 48 A1EYP CAK H27 SING N N 49 A1EYP CAK H28 SING N N 50 A1EYP CAV H29 SING N N 51 A1EYP CAW H30 SING N N 52 A1EYP CAX H31 SING N N 53 A1EYP CAY H32 SING N N 54 A1EYP CAZ H33 SING N N 55 A1EYP C OXT SING N N 56 A1EYP OXT H3 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EYP InChI InChI 1.06 "InChI=1S/C20H29N3O4/c1-20(15-7-3-2-4-8-15)11-10-17(13-16(20)14-23(26)27)22-12-6-5-9-18(21)19(24)25/h2-4,7-8,10-11,16-18,22H,5-6,9,12-14,21H2,1H3,(H,24,25)/t16-,17-,18+,20+/m1/s1" A1EYP InChIKey InChI 1.06 FSDRAZMHPCMBOI-XSYGEPLQSA-N A1EYP SMILES_CANONICAL CACTVS 3.385 "C[C@]1(C=C[C@H](C[C@@H]1C[N+]([O-])=O)NCCCC[C@H](N)C(O)=O)c2ccccc2" A1EYP SMILES CACTVS 3.385 "C[C]1(C=C[CH](C[CH]1C[N+]([O-])=O)NCCCC[CH](N)C(O)=O)c2ccccc2" A1EYP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1(C=C[C@H](C[C@@H]1C[N+](=O)[O-])NCCCC[C@@H](C(=O)O)N)c2ccccc2" A1EYP SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C=CC(CC1C[N+](=O)[O-])NCCCCC(C(=O)O)N)c2ccccc2" # _pdbx_chem_comp_identifier.comp_id A1EYP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(1~{S},4~{R},5~{S})-4-methyl-5-(nitromethyl)-4-phenyl-cyclohex-2-en-1-yl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EYP "Create component" 2025-09-23 PDBC A1EYP "Initial release" 2026-02-11 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1EYP _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #