data_A1EZE # _chem_comp.id A1EZE _chem_comp.name "[9-[2-carboxy-4-[2-[2-[2-[(2,4-dinitrophenyl)amino]ethoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H39 N6 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-10-24 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 727.740 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EZE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9X99 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EZE C4 C1 C 0 1 N N N N N N -16.213 43.188 12.648 8.634 -0.940 1.032 C4 A1EZE 1 A1EZE C5 C2 C 0 1 N N N N N N -16.417 41.824 12.686 7.573 -0.127 0.759 C5 A1EZE 2 A1EZE C6 C3 C 0 1 N N N N N N -17.485 41.226 12.022 6.338 -0.708 0.232 C6 A1EZE 3 A1EZE C7 C4 C 0 1 N N N N N N -18.350 42.048 11.307 6.241 -2.098 0.005 C7 A1EZE 4 A1EZE C8 C5 C 0 1 N N N N N N -18.156 43.415 11.262 7.295 -2.901 0.277 C8 A1EZE 5 A1EZE C10 C6 C 0 1 Y N N N N N -18.779 39.107 11.424 3.984 -0.394 -0.578 C10 A1EZE 6 A1EZE C13 C7 C 0 1 Y N N N N N -20.787 37.912 9.886 1.585 -1.394 -1.578 C13 A1EZE 7 A1EZE C17 C8 C 0 1 N N N N N N -25.253 38.484 8.117 -2.555 -3.819 -0.668 C17 A1EZE 8 A1EZE C20 C9 C 0 1 N N N N N N -26.732 40.165 9.990 -3.997 -2.285 2.410 C20 A1EZE 9 A1EZE C22 C10 C 0 1 N N N N N N -26.783 38.327 11.503 -5.286 -0.277 2.631 C22 A1EZE 10 A1EZE C26 C11 C 0 1 Y N N N N N -23.674 35.082 11.125 -8.409 1.895 0.550 C26 A1EZE 11 A1EZE C28 C12 C 0 1 Y N N N N N -21.408 35.014 11.848 -10.566 1.810 -0.486 C28 A1EZE 12 A1EZE C1 C13 C 0 1 N N N N N N -15.775 45.979 12.562 10.764 -2.569 1.706 C1 A1EZE 13 A1EZE C11 C14 C 0 1 Y N N N N N -18.458 38.217 10.401 3.106 -1.081 0.262 C11 A1EZE 14 A1EZE C12 C15 C 0 1 Y N N N N N -19.452 37.628 9.643 1.919 -1.576 -0.233 C12 A1EZE 15 A1EZE C14 C16 C 0 1 N N N N N N -21.848 37.317 9.016 0.312 -1.933 -2.101 C14 A1EZE 16 A1EZE C16 C17 C 0 1 N N N N N N -24.165 37.446 8.236 -1.792 -3.124 -1.798 C16 A1EZE 17 A1EZE C19 C18 C 0 1 N N N N N N -25.233 40.066 9.905 -3.650 -3.402 1.423 C19 A1EZE 18 A1EZE C23 C19 C 0 1 N N N N N N -26.063 37.066 11.100 -6.245 0.640 1.868 C23 A1EZE 19 A1EZE C25 C20 C 0 1 Y N N N N N -23.975 36.062 12.080 -8.516 0.550 0.880 C25 A1EZE 20 A1EZE C27 C21 C 0 1 Y N N N N N -22.402 34.554 11.004 -9.434 2.521 -0.132 C27 A1EZE 21 A1EZE C3 C22 C 0 1 N N N N N N -17.089 44.011 11.930 8.535 -2.329 0.798 C3 A1EZE 22 A1EZE C32 C23 C 0 1 Y N N N N N -21.639 35.972 12.806 -10.672 0.468 -0.168 C32 A1EZE 23 A1EZE C33 C24 C 0 1 Y N N N N N -22.904 36.489 12.916 -9.652 -0.162 0.518 C33 A1EZE 24 A1EZE C38 C25 C 0 1 Y N N N N N -21.123 38.792 10.911 2.455 -0.714 -2.430 C38 A1EZE 25 A1EZE C39 C26 C 0 1 Y N N N N N -20.130 39.393 11.685 3.653 -0.207 -1.937 C39 A1EZE 26 A1EZE C40 C27 C 0 1 N N N N N N -20.605 40.316 12.773 4.573 0.523 -2.831 C40 A1EZE 27 A1EZE C43 C28 C 0 1 Y N N N N N -16.749 39.059 12.887 5.420 1.575 0.214 C43 A1EZE 28 A1EZE C44 C29 C 0 1 Y N N N N N -16.859 37.680 13.130 4.372 2.469 -0.043 C44 A1EZE 29 A1EZE C45 C30 C 0 1 Y N N N N N -16.013 37.016 13.928 4.538 3.800 0.201 C45 A1EZE 30 A1EZE C46 C31 C 0 1 Y N N N N N -14.948 37.684 14.586 5.750 4.278 0.706 C46 A1EZE 31 A1EZE C47 C32 C 0 1 Y N N N N N -14.789 39.077 14.361 6.798 3.405 0.964 C47 A1EZE 32 A1EZE C48 C33 C 0 1 Y N N N N N -15.660 39.728 13.550 6.645 2.048 0.722 C48 A1EZE 33 A1EZE C51 C34 C 0 1 N N N N N N -14.307 35.616 15.709 4.805 6.562 0.678 C51 A1EZE 34 A1EZE C52 C35 C 0 1 N N N N N N -13.109 37.757 16.189 7.176 6.143 1.479 C52 A1EZE 35 A1EZE C53 C36 C 0 1 N N N N N N -17.909 46.223 11.281 9.511 -4.540 0.715 C53 A1EZE 36 A1EZE C9 C37 C 0 1 N N N N N N -17.652 39.785 12.132 5.251 0.140 -0.045 C9 A1EZE 37 A1EZE N15 N1 N 0 1 N N N N N N -23.050 37.899 9.053 -0.530 -2.590 -1.279 N15 A1EZE 38 A1EZE N2 N2 N 1 1 N N N N N N -16.924 45.366 11.917 9.568 -3.118 1.064 N2 A1EZE 39 A1EZE N24 N3 N 0 1 N N N N N N -25.241 36.569 12.191 -7.484 -0.085 1.574 N24 A1EZE 40 A1EZE N29 N4 N 0 1 N N N N N N -20.034 34.531 11.670 -11.661 2.483 -1.221 N29 A1EZE 41 A1EZE N34 N5 N 0 1 N N N N N N -23.076 37.531 13.926 -9.771 -1.596 0.868 N34 A1EZE 42 A1EZE N50 N6 N 0 1 N N N N N N -14.149 37.047 15.443 5.907 5.637 0.950 N50 A1EZE 43 A1EZE O18 O1 O 0 1 N N N N N N -24.800 39.755 8.581 -2.929 -2.854 0.318 O18 A1EZE 44 A1EZE O21 O2 O 0 1 N N N N N N -27.348 38.930 10.349 -4.897 -1.365 1.790 O21 A1EZE 45 A1EZE O30 O3 O 0 1 N N N N N N -19.764 33.892 10.657 -11.569 3.664 -1.502 O30 A1EZE 46 A1EZE O31 O4 O 0 1 N N N N N N -19.213 34.808 12.537 -12.652 1.854 -1.546 O31 A1EZE 47 A1EZE O35 O5 O 0 1 N N N N N N -22.072 37.950 14.484 -9.349 -1.999 1.937 O35 A1EZE 48 A1EZE O36 O6 O 0 1 N N N N N N -24.206 37.935 14.171 -10.290 -2.372 0.087 O36 A1EZE 49 A1EZE O37 O7 O 0 1 N N N N N N -21.615 36.326 8.329 0.024 -1.783 -3.273 O37 A1EZE 50 A1EZE O41 O8 O 0 1 N N N N N N -21.522 41.125 12.481 5.618 0.965 -2.397 O41 A1EZE 51 A1EZE O42 O9 O 0 1 N N N N N N -20.062 40.236 13.894 4.254 0.699 -4.128 O42 A1EZE 52 A1EZE O49 O10 O 0 1 N N N N N N -15.512 41.086 13.429 7.666 1.202 0.976 O49 A1EZE 53 A1EZE H1 H1 H 0 1 N N N N N N -15.375 43.622 13.174 9.550 -0.521 1.421 H1 A1EZE 54 A1EZE H2 H2 H 0 1 N N N N N N -19.185 41.611 10.780 5.326 -2.520 -0.384 H2 A1EZE 55 A1EZE H3 H3 H 0 1 N N N N N N -18.842 44.031 10.700 7.221 -3.965 0.105 H3 A1EZE 56 A1EZE H4 H4 H 0 1 N N N N N N -25.552 38.572 7.062 -3.450 -4.293 -1.071 H4 A1EZE 57 A1EZE H5 H5 H 0 1 N N N N N N -26.118 38.169 8.719 -1.917 -4.576 -0.211 H5 A1EZE 58 A1EZE H6 H6 H 0 1 N N N N N N -26.992 40.920 10.746 -4.468 -2.715 3.294 H6 A1EZE 59 A1EZE H7 H7 H 0 1 N N N N N N -27.120 40.479 9.010 -3.086 -1.762 2.701 H7 A1EZE 60 A1EZE H8 H8 H 0 1 N N N N N N -26.072 39.023 11.971 -4.402 0.288 2.927 H8 A1EZE 61 A1EZE H9 H9 H 0 1 N N N N N N -27.582 38.082 12.219 -5.784 -0.665 3.520 H9 A1EZE 62 A1EZE H10 H10 H 0 1 N N N N N N -24.455 34.730 10.467 -7.527 2.452 0.830 H10 A1EZE 63 A1EZE H11 H11 H 0 1 N N N N N N -15.133 45.195 12.990 11.460 -2.222 0.942 H11 A1EZE 64 A1EZE H12 H12 H 0 1 N N N N N N -15.203 46.557 11.821 10.482 -1.734 2.347 H12 A1EZE 65 A1EZE H13 H13 H 0 1 N N N N N N -16.119 46.649 13.363 11.242 -3.343 2.307 H13 A1EZE 66 A1EZE H14 H14 H 0 1 N N N N N N -17.423 37.985 10.199 3.357 -1.224 1.303 H14 A1EZE 67 A1EZE H15 H15 H 0 1 N N N N N N -19.186 36.940 8.854 1.243 -2.106 0.421 H15 A1EZE 68 A1EZE H16 H16 H 0 1 N N N N N N -24.591 36.540 8.691 -1.584 -3.842 -2.591 H16 A1EZE 69 A1EZE H17 H17 H 0 1 N N N N N N -23.791 37.210 7.229 -2.396 -2.309 -2.195 H17 A1EZE 70 A1EZE H18 H18 H 0 1 N N N N N N -24.888 39.276 10.588 -3.036 -4.151 1.923 H18 A1EZE 71 A1EZE H19 H19 H 0 1 N N N N N N -24.794 41.028 10.207 -4.568 -3.867 1.063 H19 A1EZE 72 A1EZE H20 H20 H 0 1 N N N N N N -26.803 36.299 10.828 -6.472 1.515 2.477 H20 A1EZE 73 A1EZE H21 H21 H 0 1 N N N N N N -25.421 37.279 10.233 -5.779 0.957 0.935 H21 A1EZE 74 A1EZE H22 H22 H 0 1 N N N N N N -22.189 33.797 10.264 -9.351 3.566 -0.389 H22 A1EZE 75 A1EZE H23 H23 H 0 1 N N N N N N -20.845 36.309 13.455 -11.557 -0.084 -0.445 H23 A1EZE 76 A1EZE H24 H24 H 0 1 N N N N N N -22.162 39.011 11.109 2.196 -0.575 -3.469 H24 A1EZE 77 A1EZE H25 H25 H 0 1 N N N N N N -17.659 37.133 12.654 3.433 2.104 -0.433 H25 A1EZE 78 A1EZE H26 H26 H 0 1 N N N N N N -16.144 35.954 14.073 3.730 4.488 0.003 H26 A1EZE 79 A1EZE H27 H27 H 0 1 N N N N N N -13.980 39.615 14.833 7.732 3.783 1.354 H27 A1EZE 80 A1EZE H28 H28 H 0 1 N N N N N N -13.552 35.293 16.441 4.185 6.660 1.569 H28 A1EZE 81 A1EZE H29 H29 H 0 1 N N N N N N -15.313 35.427 16.112 5.208 7.538 0.408 H29 A1EZE 82 A1EZE H30 H30 H 0 1 N N N N N N -14.175 35.053 14.773 4.202 6.178 -0.144 H30 A1EZE 83 A1EZE H31 H31 H 0 1 N N N N N N -12.570 37.047 16.834 7.838 6.401 0.652 H31 A1EZE 84 A1EZE H32 H32 H 0 1 N N N N N N -12.403 38.220 15.484 6.989 7.030 2.085 H32 A1EZE 85 A1EZE H33 H33 H 0 1 N N N N N N -13.572 38.538 16.810 7.646 5.376 2.094 H33 A1EZE 86 A1EZE H34 H34 H 0 1 N N N N N N -17.598 47.274 11.376 9.281 -4.645 -0.346 H34 A1EZE 87 A1EZE H35 H35 H 0 1 N N N N N N -17.990 45.960 10.216 10.474 -5.004 0.925 H35 A1EZE 88 A1EZE H36 H36 H 0 1 N N N N N N -18.885 46.084 11.769 8.735 -5.028 1.304 H36 A1EZE 89 A1EZE H37 H37 H 0 1 N N N N N N -23.189 38.677 9.666 -0.301 -2.710 -0.344 H37 A1EZE 90 A1EZE H38 H38 H 0 1 N N N N N N -25.161 37.335 12.829 -7.587 -1.006 1.861 H38 A1EZE 91 A1EZE H39 H39 H 0 1 N N N N N N -20.449 40.876 14.480 4.888 1.184 -4.674 H39 A1EZE 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EZE C17 C16 SING N N 1 A1EZE C17 O18 SING N N 2 A1EZE C16 N15 SING N N 3 A1EZE O37 C14 DOUB N N 4 A1EZE O18 C19 SING N N 5 A1EZE C14 N15 SING N N 6 A1EZE C14 C13 SING N N 7 A1EZE C12 C13 DOUB Y N 8 A1EZE C12 C11 SING Y N 9 A1EZE C13 C38 SING Y N 10 A1EZE C19 C20 SING N N 11 A1EZE C20 O21 SING N N 12 A1EZE O21 C22 SING N N 13 A1EZE C11 C10 DOUB Y N 14 A1EZE O30 N29 DOUB N N 15 A1EZE C38 C39 DOUB Y N 16 A1EZE C27 C26 DOUB Y N 17 A1EZE C27 C28 SING Y N 18 A1EZE C23 C22 SING N N 19 A1EZE C23 N24 SING N N 20 A1EZE C26 C25 SING Y N 21 A1EZE C8 C7 DOUB N N 22 A1EZE C8 C3 SING N N 23 A1EZE C53 N2 SING N N 24 A1EZE C7 C6 SING N N 25 A1EZE C10 C39 SING Y N 26 A1EZE C10 C9 SING N N 27 A1EZE N29 C28 SING N N 28 A1EZE N29 O31 DOUB N N 29 A1EZE C39 C40 SING N N 30 A1EZE C28 C32 DOUB Y N 31 A1EZE N2 C3 DOUB N N 32 A1EZE N2 C1 SING N N 33 A1EZE C3 C4 SING N N 34 A1EZE C6 C9 DOUB N N 35 A1EZE C6 C5 SING N N 36 A1EZE C25 N24 SING N N 37 A1EZE C25 C33 DOUB Y N 38 A1EZE C9 C43 SING N N 39 A1EZE O41 C40 DOUB N N 40 A1EZE C4 C5 DOUB N N 41 A1EZE C5 O49 SING N N 42 A1EZE C40 O42 SING N N 43 A1EZE C32 C33 SING Y N 44 A1EZE C43 C44 DOUB Y N 45 A1EZE C43 C48 SING Y N 46 A1EZE C33 N34 SING N N 47 A1EZE C44 C45 SING Y N 48 A1EZE O49 C48 SING N N 49 A1EZE C48 C47 DOUB Y N 50 A1EZE N34 O36 DOUB N N 51 A1EZE N34 O35 DOUB N N 52 A1EZE C45 C46 DOUB Y N 53 A1EZE C47 C46 SING Y N 54 A1EZE C46 N50 SING N N 55 A1EZE N50 C51 SING N N 56 A1EZE N50 C52 SING N N 57 A1EZE C4 H1 SING N N 58 A1EZE C7 H2 SING N N 59 A1EZE C8 H3 SING N N 60 A1EZE C17 H4 SING N N 61 A1EZE C17 H5 SING N N 62 A1EZE C20 H6 SING N N 63 A1EZE C20 H7 SING N N 64 A1EZE C22 H8 SING N N 65 A1EZE C22 H9 SING N N 66 A1EZE C26 H10 SING N N 67 A1EZE C1 H11 SING N N 68 A1EZE C1 H12 SING N N 69 A1EZE C1 H13 SING N N 70 A1EZE C11 H14 SING N N 71 A1EZE C12 H15 SING N N 72 A1EZE C16 H16 SING N N 73 A1EZE C16 H17 SING N N 74 A1EZE C19 H18 SING N N 75 A1EZE C19 H19 SING N N 76 A1EZE C23 H20 SING N N 77 A1EZE C23 H21 SING N N 78 A1EZE C27 H22 SING N N 79 A1EZE C32 H23 SING N N 80 A1EZE C38 H24 SING N N 81 A1EZE C44 H25 SING N N 82 A1EZE C45 H26 SING N N 83 A1EZE C47 H27 SING N N 84 A1EZE C51 H28 SING N N 85 A1EZE C51 H29 SING N N 86 A1EZE C51 H30 SING N N 87 A1EZE C52 H31 SING N N 88 A1EZE C52 H32 SING N N 89 A1EZE C52 H33 SING N N 90 A1EZE C53 H34 SING N N 91 A1EZE C53 H35 SING N N 92 A1EZE C53 H36 SING N N 93 A1EZE N15 H37 SING N N 94 A1EZE N24 H38 SING N N 95 A1EZE O42 H39 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EZE InChI InChI 1.06 "InChI=1S/C37H38N6O10/c1-40(2)24-6-10-28-33(21-24)53-34-22-25(41(3)4)7-11-29(34)35(28)27-9-5-23(19-30(27)37(45)46)36(44)39-14-16-52-18-17-51-15-13-38-31-12-8-26(42(47)48)20-32(31)43(49)50/h5-12,19-22,38H,13-18H2,1-4H3,(H-,39,44,45,46)/p+1" A1EZE InChIKey InChI 1.06 XJJZEOMXQMSRAG-UHFFFAOYSA-O A1EZE SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C(O)=O)C(=O)NCCOCCOCCNc5ccc(cc5[N](=O)=O)[N](=O)=O)=[N+](C)C)c1" A1EZE SMILES CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C(O)=O)C(=O)NCCOCCOCCNc5ccc(cc5[N](=O)=O)[N](=O)=O)=[N+](C)C)c1" A1EZE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)O)C(=O)NCCOCCOCCNc5ccc(cc5N(=O)=O)N(=O)=O" A1EZE SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)O)C(=O)NCCOCCOCCNc5ccc(cc5N(=O)=O)N(=O)=O" # _pdbx_chem_comp_identifier.comp_id A1EZE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[9-[2-carboxy-4-[2-[2-[2-[(2,4-dinitrophenyl)amino]ethoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EZE "Create component" 2025-10-24 PDBC A1EZE "Modify name" 2025-10-27 PDBC A1EZE "Initial release" 2026-10-28 RCSB #