data_A1EZF # _chem_comp.id A1EZF _chem_comp.name ;Adenosine 5'-diphosphate-cyclo[N7:1'']-ribose ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N5 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms N7-cADPR _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-26 _chem_comp.pdbx_modified_date 2026-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.316 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1EZF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1EZF C13 C1 C 0 1 N N R N N N ? ? ? -0.452 3.401 0.180 C13 A1EZF 1 A1EZF C24 C2 C 0 1 N N N N N N ? ? ? -1.640 -2.314 0.129 C24 A1EZF 2 A1EZF C28 C3 C 0 1 N N R N N N ? ? ? 1.421 -3.398 0.534 C28 A1EZF 3 A1EZF N01 N1 N 0 1 N N N N N N ? ? ? 3.884 -2.228 1.704 N01 A1EZF 4 A1EZF C02 C4 C 0 1 Y N N N N N ? ? ? 4.017 -1.158 0.830 C02 A1EZF 5 A1EZF N03 N2 N 0 1 Y N N N N N ? ? ? 5.232 -0.681 0.561 N03 A1EZF 6 A1EZF C04 C5 C 0 1 Y N N N N N ? ? ? 5.399 0.343 -0.249 C04 A1EZF 7 A1EZF N05 N3 N 0 1 Y N N N N N ? ? ? 4.376 0.966 -0.798 N05 A1EZF 8 A1EZF C06 C6 C 0 1 Y N N N N N ? ? ? 3.130 0.554 -0.567 C06 A1EZF 9 A1EZF C07 C7 C 0 1 Y N N N N N ? ? ? 2.916 -0.567 0.216 C07 A1EZF 10 A1EZF N08 N4 N 0 1 N N N N N N ? ? ? 1.520 -0.939 0.232 N08 A1EZF 11 A1EZF C09 C8 C 0 1 N N N N N N ? ? ? 0.930 0.005 -0.800 C09 A1EZF 12 A1EZF N10 N5 N 0 1 N N N N N N ? ? ? 1.901 1.106 -0.936 N10 A1EZF 13 A1EZF C11 C9 C 0 1 N N R N N N ? ? ? 1.569 2.236 -0.052 C11 A1EZF 14 A1EZF O12 O1 O 0 1 N N N N N N ? ? ? 0.217 2.165 0.369 O12 A1EZF 15 A1EZF C14 C10 C 0 1 N N N N N N ? ? ? -1.733 3.184 -0.634 C14 A1EZF 16 A1EZF O15 O2 O 0 1 N N N N N N ? ? ? -2.215 1.857 -0.432 O15 A1EZF 17 A1EZF P16 P1 P 0 1 N N N N N N ? ? ? -2.934 1.356 0.915 P16 A1EZF 18 A1EZF O17 O3 O 0 1 N N N N N N ? ? ? -3.678 2.470 1.544 O17 A1EZF 19 A1EZF O18 O4 O 0 1 N N N N N N ? ? ? -1.820 0.806 1.941 O18 A1EZF 20 A1EZF O19 O5 O 0 1 N N N N N N ? ? ? -3.962 0.170 0.566 O19 A1EZF 21 A1EZF P20 P2 P 0 1 N N N N N N ? ? ? -3.944 -1.083 -0.450 P20 A1EZF 22 A1EZF O21 O6 O 0 1 N N N N N N ? ? ? -4.609 -0.697 -1.715 O21 A1EZF 23 A1EZF O22 O7 O 0 1 N N N N N N ? ? ? -4.728 -2.322 0.215 O22 A1EZF 24 A1EZF O23 O8 O 0 1 N N N N N N ? ? ? -2.423 -1.510 -0.758 O23 A1EZF 25 A1EZF C25 C11 C 0 1 N N R N N N ? ? ? -0.656 -3.157 -0.683 C25 A1EZF 26 A1EZF O26 O9 O 0 1 N N N N N N ? ? ? 0.323 -2.322 -1.293 O26 A1EZF 27 A1EZF C27 C12 C 0 1 N N R N N N ? ? ? 1.492 -2.266 -0.491 C27 A1EZF 28 A1EZF O29 O10 O 0 1 N N N N N N ? ? ? 2.508 -4.309 0.349 O29 A1EZF 29 A1EZF C30 C13 C 0 1 N N S N N N ? ? ? 0.089 -4.121 0.252 C30 A1EZF 30 A1EZF O31 O11 O 0 1 N N N N N N ? ? ? 0.334 -5.367 -0.402 O31 A1EZF 31 A1EZF C32 C14 C 0 1 N N S N N N ? ? ? 0.485 4.348 -0.576 C32 A1EZF 32 A1EZF O33 O12 O 0 1 N N N N N N ? ? ? 0.755 5.514 0.204 O33 A1EZF 33 A1EZF C34 C15 C 0 1 N N R N N N ? ? ? 1.780 3.553 -0.811 C34 A1EZF 34 A1EZF O35 O13 O 0 1 N N N N N N ? ? ? 2.909 4.265 -0.300 O35 A1EZF 35 A1EZF H1 H1 H 0 1 N N N N N N ? ? ? -0.711 3.837 1.145 H1 A1EZF 36 A1EZF H2 H2 H 0 1 N N N N N N ? ? ? -1.090 -1.667 0.811 H2 A1EZF 37 A1EZF H3 H3 H 0 1 N N N N N N ? ? ? -2.295 -2.968 0.702 H3 A1EZF 38 A1EZF H4 H4 H 0 1 N N N N N N ? ? ? 1.418 -3.001 1.550 H4 A1EZF 39 A1EZF H5 H5 H 0 1 N N N N N N ? ? ? 4.672 -2.705 2.010 H5 A1EZF 40 A1EZF H6 H6 H 0 1 N N N N N N ? ? ? 3.004 -2.498 2.010 H6 A1EZF 41 A1EZF H7 H7 H 0 1 N N N N N N ? ? ? 6.395 0.691 -0.460 H7 A1EZF 42 A1EZF H8 H8 H 0 1 N N N N N N ? ? ? 0.842 -0.505 -1.758 H8 A1EZF 43 A1EZF H9 H9 H 0 1 N N N N N N ? ? ? 2.232 2.217 0.821 H9 A1EZF 44 A1EZF H10 H10 H 0 1 N N N N N N ? ? ? -2.487 3.907 -0.330 H10 A1EZF 45 A1EZF H11 H11 H 0 1 N N N N N N ? ? ? -1.510 3.326 -1.691 H11 A1EZF 46 A1EZF H12 H12 H 0 1 N N N N N N ? ? ? -2.181 0.482 2.778 H12 A1EZF 47 A1EZF H13 H13 H 0 1 N N N N N N ? ? ? -5.653 -2.136 0.423 H13 A1EZF 48 A1EZF H14 H14 H 0 1 N N N N N N ? ? ? -1.190 -3.723 -1.446 H14 A1EZF 49 A1EZF H15 H15 H 0 1 N N N N N N ? ? ? 2.393 -2.334 -1.091 H15 A1EZF 50 A1EZF H16 H16 H 0 1 N N N N N N ? ? ? 2.492 -5.067 0.949 H16 A1EZF 51 A1EZF H17 H17 H 0 1 N N N N N N ? ? ? -0.464 -4.270 1.176 H17 A1EZF 52 A1EZF H18 H18 H 0 1 N N N N N N ? ? ? 0.803 -6.013 0.145 H18 A1EZF 53 A1EZF H19 H19 H 0 1 N N N N N N ? ? ? 0.039 4.635 -1.532 H19 A1EZF 54 A1EZF H20 H20 H 0 1 N N N N N N ? ? ? 1.344 6.148 -0.227 H20 A1EZF 55 A1EZF H21 H21 H 0 1 N N N N N N ? ? ? 1.917 3.357 -1.876 H21 A1EZF 56 A1EZF H22 H22 H 0 1 N N N N N N ? ? ? 3.081 5.104 -0.749 H22 A1EZF 57 A1EZF H23 H23 H 0 1 N N N N N N ? ? ? -0.034 0.357 -0.454 H23 A1EZF 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EZF O17 P16 DOUB N N 1 A1EZF O21 P20 DOUB N N 2 A1EZF O18 P16 SING N N 3 A1EZF P16 O19 SING N N 4 A1EZF P16 O15 SING N N 5 A1EZF P20 O19 SING N N 6 A1EZF P20 O22 SING N N 7 A1EZF P20 O23 SING N N 8 A1EZF O15 C14 SING N N 9 A1EZF C14 C13 SING N N 10 A1EZF C24 O23 SING N N 11 A1EZF C24 C25 SING N N 12 A1EZF C25 O26 SING N N 13 A1EZF C25 C30 SING N N 14 A1EZF C13 O12 SING N N 15 A1EZF C13 C32 SING N N 16 A1EZF O26 C27 SING N N 17 A1EZF O12 C11 SING N N 18 A1EZF C32 O33 SING N N 19 A1EZF C32 C34 SING N N 20 A1EZF C30 O31 SING N N 21 A1EZF C30 C28 SING N N 22 A1EZF C09 N08 SING N N 23 A1EZF C09 N10 SING N N 24 A1EZF C27 C28 SING N N 25 A1EZF C27 N08 SING N N 26 A1EZF C11 C34 SING N N 27 A1EZF C11 N10 SING N N 28 A1EZF C34 O35 SING N N 29 A1EZF C28 O29 SING N N 30 A1EZF N08 C07 SING N N 31 A1EZF N10 C06 SING N N 32 A1EZF C07 C06 DOUB Y N 33 A1EZF C07 C02 SING Y N 34 A1EZF C06 N05 SING Y N 35 A1EZF N05 C04 DOUB Y N 36 A1EZF C02 N01 SING N N 37 A1EZF C02 N03 DOUB Y N 38 A1EZF C04 N03 SING Y N 39 A1EZF C13 H1 SING N N 40 A1EZF C24 H2 SING N N 41 A1EZF C24 H3 SING N N 42 A1EZF C28 H4 SING N N 43 A1EZF N01 H5 SING N N 44 A1EZF N01 H6 SING N N 45 A1EZF C04 H7 SING N N 46 A1EZF C09 H8 SING N N 47 A1EZF C11 H9 SING N N 48 A1EZF C14 H10 SING N N 49 A1EZF C14 H11 SING N N 50 A1EZF O18 H12 SING N N 51 A1EZF O22 H13 SING N N 52 A1EZF C25 H14 SING N N 53 A1EZF C27 H15 SING N N 54 A1EZF O29 H16 SING N N 55 A1EZF C30 H17 SING N N 56 A1EZF O31 H18 SING N N 57 A1EZF C32 H19 SING N N 58 A1EZF O33 H20 SING N N 59 A1EZF C34 H21 SING N N 60 A1EZF O35 H22 SING N N 61 A1EZF C09 H23 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1EZF InChI InChI 1.06 "InChI=1S/C15H23N5O13P2/c16-12-7-13(18-3-17-12)20-4-19(7)14-10(23)8(21)5(31-14)1-29-34(25,26)33-35(27,28)30-2-6-9(22)11(24)15(20)32-6/h3,5-6,8-11,14-15,21-24H,1-2,4H2,(H,25,26)(H,27,28)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1" A1EZF InChIKey InChI 1.06 YTHNJUITAOGVDA-KEOHHSTQSA-N A1EZF SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2[N@@]3C[N@@]([C@@H]4O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@@H]3[C@H](O)[C@@H]5O)[C@@H](O)[C@H]4O)c12" A1EZF SMILES CACTVS 3.385 "Nc1ncnc2[N]3C[N]([CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH]3[CH](O)[CH]5O)[CH](O)[CH]4O)c12" A1EZF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)N3CN2[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(OP(=O)(OC[C@@H]5[C@H]([C@H]([C@H]3O5)O)O)O)O)O)O)N" A1EZF SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)N3CN2C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C3O5)O)O)O)O)O)O)N" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1EZF _pdbx_chem_comp_synonyms.name N7-cADPR _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1EZF "Create component" 2025-10-26 PDBC A1EZF "Modify coordinates" 2026-09-15 RCSB A1EZF "Initial release" 2026-09-23 RCSB #