data_A1FDM # _chem_comp.id A1FDM _chem_comp.name "~{N}-cyclopropyl-4-[2-[2-(5-methylimidazol-1-yl)ethylamino]-5-(trifluoromethyl)pyrimidin-4-yl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 F3 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-05 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1FDM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 44HW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1FDM C10 C1 C 0 1 Y N N N N N -31.831 -23.140 13.842 -2.117 0.029 -0.099 C10 A1FDM 1 A1FDM C13 C2 C 0 1 Y N N N N N -33.573 -21.767 15.364 -0.135 -1.771 0.073 C13 A1FDM 2 A1FDM C20 C3 C 0 1 Y N N N N N -30.375 -21.206 17.233 1.896 0.988 1.166 C20 A1FDM 3 A1FDM C21 C4 C 0 1 Y N N N N N -29.749 -21.138 18.473 3.195 1.436 1.258 C21 A1FDM 4 A1FDM C22 C5 C 0 1 Y N N N N N -30.341 -21.724 19.595 4.156 0.986 0.350 C22 A1FDM 5 A1FDM C26 C6 C 0 1 N N N N N N -30.388 -22.060 24.573 8.707 1.483 -1.602 C26 A1FDM 6 A1FDM C01 C7 C 0 1 N N N N N N -29.461 -26.618 9.805 -7.316 0.969 2.054 C01 A1FDM 7 A1FDM C02 C8 C 0 1 Y N N N N N -30.890 -26.367 9.306 -7.672 0.925 0.590 C02 A1FDM 8 A1FDM C03 C9 C 0 1 Y N N N N N -31.403 -26.541 8.060 -8.857 0.564 0.062 C03 A1FDM 9 A1FDM C05 C10 C 0 1 Y N N N N N -32.977 -25.771 9.344 -7.565 1.067 -1.592 C05 A1FDM 10 A1FDM C07 C11 C 0 1 N N N N N N -31.711 -25.566 11.505 -5.464 1.706 -0.368 C07 A1FDM 11 A1FDM C08 C12 C 0 1 N N N N N N -31.124 -24.151 11.653 -4.534 0.495 -0.280 C08 A1FDM 12 A1FDM C12 C13 C 0 1 Y N N N N N -33.934 -22.189 14.073 -1.454 -2.177 -0.019 C12 A1FDM 13 A1FDM C14 C14 C 0 1 N N N N N N -34.563 -20.951 16.229 0.978 -2.783 0.170 C14 A1FDM 14 A1FDM C18 C15 C 0 1 Y N N N N N -32.280 -22.052 15.804 0.142 -0.402 0.069 C18 A1FDM 15 A1FDM C19 C16 C 0 1 Y N N N N N -31.610 -21.827 17.150 1.540 0.084 0.165 C19 A1FDM 16 A1FDM C23 C17 C 0 1 N N N N N N -29.614 -21.698 20.959 5.551 1.466 0.449 C23 A1FDM 17 A1FDM C25 C18 C 0 1 N N N N N N -29.545 -22.552 23.383 7.859 1.506 -0.329 C25 A1FDM 18 A1FDM C27 C19 C 0 1 N N N N N N -29.218 -21.219 24.051 8.975 0.472 -0.487 C27 A1FDM 19 A1FDM C29 C20 C 0 1 Y N N N N N -31.544 -22.392 19.479 3.798 0.081 -0.651 C29 A1FDM 20 A1FDM C30 C21 C 0 1 Y N N N N N -32.183 -22.465 18.249 2.497 -0.362 -0.746 C30 A1FDM 21 A1FDM F15 F1 F 0 1 N N N N N N -35.617 -20.581 15.469 0.434 -4.064 0.310 F15 A1FDM 22 A1FDM F16 F2 F 0 1 N N N N N N -34.978 -21.675 17.281 1.757 -2.732 -0.991 F16 A1FDM 23 A1FDM F17 F3 F 0 1 N N N N N N -33.967 -19.835 16.705 1.778 -2.492 1.281 F17 A1FDM 24 A1FDM N04 N1 N 0 1 Y N N N N N -32.712 -26.186 8.095 -8.763 0.660 -1.273 N04 A1FDM 25 A1FDM N06 N2 N 0 1 Y N N N N N -31.877 -25.901 10.068 -6.853 1.249 -0.458 N06 A1FDM 26 A1FDM N09 N3 N 0 1 N N N N N N -30.853 -23.899 13.068 -3.145 0.952 -0.189 N09 A1FDM 27 A1FDM N11 N4 N 0 1 Y N N N N N -33.041 -22.898 13.358 -2.408 -1.264 -0.102 N11 A1FDM 28 A1FDM N24 N5 N 0 1 N N N N N N -30.197 -22.464 22.056 6.477 1.030 -0.427 N24 A1FDM 29 A1FDM N31 N6 N 0 1 Y N N N N N -31.468 -22.762 15.052 -0.868 0.460 -0.018 N31 A1FDM 30 A1FDM O28 O1 O 0 1 N N N N N N -28.551 -21.156 21.065 5.862 2.253 1.322 O28 A1FDM 31 A1FDM H201 H1 H 0 0 N N N N N N -29.909 -20.784 16.355 1.155 1.333 1.870 H201 A1FDM 32 A1FDM H211 H2 H 0 0 N N N N N N -28.801 -20.630 18.569 3.471 2.136 2.033 H211 A1FDM 33 A1FDM H261 H3 H 0 0 N N N N N N -31.423 -21.723 24.413 8.236 1.114 -2.514 H261 A1FDM 34 A1FDM H262 H4 H 0 0 N N N N N N -30.313 -22.564 25.548 9.431 2.286 -1.740 H262 A1FDM 35 A1FDM H011 H5 H 0 0 N N N N N N -28.861 -25.705 9.675 -7.554 1.954 2.456 H011 A1FDM 36 A1FDM H013 H6 H 0 0 N N N N N N -29.487 -26.890 10.870 -7.887 0.210 2.589 H013 A1FDM 37 A1FDM H012 H7 H 0 0 N N N N N N -29.010 -27.439 9.228 -6.251 0.774 2.175 H012 A1FDM 38 A1FDM H031 H8 H 0 0 N N N N N N -30.864 -26.899 7.195 -9.729 0.252 0.616 H031 A1FDM 39 A1FDM H051 H9 H 0 0 N N N N N N -33.926 -25.395 9.697 -7.203 1.235 -2.595 H051 A1FDM 40 A1FDM H072 H10 H 0 0 N N N N N N -32.690 -25.608 12.004 -5.342 2.324 0.522 H072 A1FDM 41 A1FDM H071 H11 H 0 0 N N N N N N -31.030 -26.293 11.972 -5.216 2.292 -1.253 H071 A1FDM 42 A1FDM H082 H12 H 0 0 N N N N N N -30.189 -24.077 11.078 -4.782 -0.090 0.606 H082 A1FDM 43 A1FDM H081 H13 H 0 0 N N N N N N -31.845 -23.410 11.277 -4.656 -0.123 -1.169 H081 A1FDM 44 A1FDM H121 H14 H 0 0 N N N N N N -34.905 -21.950 13.664 -1.704 -3.228 -0.018 H121 A1FDM 45 A1FDM H251 H15 H 0 0 N N N N N N -28.859 -23.391 23.570 8.026 2.324 0.372 H251 A1FDM 46 A1FDM H272 H16 H 0 0 N N N N N N -29.414 -20.276 23.520 8.681 -0.563 -0.664 H272 A1FDM 47 A1FDM H271 H17 H 0 0 N N N N N N -28.304 -21.117 24.654 9.877 0.609 0.111 H271 A1FDM 48 A1FDM H291 H18 H 0 0 N N N N N N -31.988 -22.858 20.346 4.540 -0.269 -1.354 H291 A1FDM 49 A1FDM H301 H19 H 0 0 N N N N N N -33.111 -23.008 18.145 2.220 -1.062 -1.520 H301 A1FDM 50 A1FDM H091 H20 H 0 0 N N N N N N -30.752 -24.789 13.512 -2.945 1.901 -0.192 H091 A1FDM 51 A1FDM H241 H21 H 0 0 N N N N N N -31.062 -22.943 21.907 6.229 0.402 -1.123 H241 A1FDM 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1FDM C02 C01 SING N N 1 A1FDM C03 C02 DOUB Y N 2 A1FDM N04 C03 SING Y N 3 A1FDM C05 N04 DOUB Y N 4 A1FDM N06 C05 SING Y N 5 A1FDM C07 N06 SING N N 6 A1FDM C08 C07 SING N N 7 A1FDM N09 C08 SING N N 8 A1FDM C10 N09 SING N N 9 A1FDM N11 C10 DOUB Y N 10 A1FDM C12 N11 SING Y N 11 A1FDM C13 C12 DOUB Y N 12 A1FDM F15 C14 SING N N 13 A1FDM F16 C14 SING N N 14 A1FDM F17 C14 SING N N 15 A1FDM C14 C13 SING N N 16 A1FDM C18 C13 SING Y N 17 A1FDM C20 C19 DOUB Y N 18 A1FDM C21 C20 SING Y N 19 A1FDM C22 C21 DOUB Y N 20 A1FDM C25 N24 SING N N 21 A1FDM C26 C25 SING N N 22 A1FDM C27 C26 SING N N 23 A1FDM N24 C23 SING N N 24 A1FDM O28 C23 DOUB N N 25 A1FDM C23 C22 SING N N 26 A1FDM C29 C22 SING Y N 27 A1FDM C30 C29 DOUB Y N 28 A1FDM C19 C18 SING N N 29 A1FDM N31 C18 DOUB Y N 30 A1FDM C02 N06 SING Y N 31 A1FDM C10 N31 SING Y N 32 A1FDM C19 C30 SING Y N 33 A1FDM C25 C27 SING N N 34 A1FDM C20 H201 SING N N 35 A1FDM C21 H211 SING N N 36 A1FDM C26 H261 SING N N 37 A1FDM C26 H262 SING N N 38 A1FDM C01 H011 SING N N 39 A1FDM C01 H013 SING N N 40 A1FDM C01 H012 SING N N 41 A1FDM C03 H031 SING N N 42 A1FDM C05 H051 SING N N 43 A1FDM C07 H072 SING N N 44 A1FDM C07 H071 SING N N 45 A1FDM C08 H082 SING N N 46 A1FDM C08 H081 SING N N 47 A1FDM C12 H121 SING N N 48 A1FDM C25 H251 SING N N 49 A1FDM C27 H272 SING N N 50 A1FDM C27 H271 SING N N 51 A1FDM C29 H291 SING N N 52 A1FDM C30 H301 SING N N 53 A1FDM N09 H091 SING N N 54 A1FDM N24 H241 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1FDM InChI InChI 1.06 "InChI=1S/C21H21F3N6O/c1-13-10-25-12-30(13)9-8-26-20-27-11-17(21(22,23)24)18(29-20)14-2-4-15(5-3-14)19(31)28-16-6-7-16/h2-5,10-12,16H,6-9H2,1H3,(H,28,31)(H,26,27,29)" A1FDM InChIKey InChI 1.06 HOTMCRPUSWVJMQ-UHFFFAOYSA-N A1FDM SMILES_CANONICAL CACTVS 3.385 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)C(=O)NC4CC4)C(F)(F)F" A1FDM SMILES CACTVS 3.385 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)C(=O)NC4CC4)C(F)(F)F" A1FDM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)C(=O)NC4CC4)C(F)(F)F" A1FDM SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)C(=O)NC4CC4)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1FDM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-cyclopropyl-4-[2-[2-(5-methylimidazol-1-yl)ethylamino]-5-(trifluoromethyl)pyrimidin-4-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1FDM "Create component" 2026-08-05 PDBC A1FDM "Initial release" 2026-11-11 RCSB #