data_A1FDN # _chem_comp.id A1FDN _chem_comp.name "1-[4-[2-[2-(5-methylimidazol-1-yl)ethylamino]-5-(trifluoromethyl)pyrimidin-4-yl]phenyl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 F3 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-05 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.374 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1FDN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 44IC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1FDN C01 C1 C 0 1 N N N N N N -29.367 -26.549 9.803 -6.374 -0.912 -2.164 C01 A1FDN 1 A1FDN C02 C2 C 0 1 Y N N N N N -30.799 -26.324 9.316 -6.790 -0.712 -0.730 C02 A1FDN 2 A1FDN C03 C3 C 0 1 Y N N N N N -31.328 -26.536 8.079 -7.975 -0.241 -0.296 C03 A1FDN 3 A1FDN C05 C4 C 0 1 Y N N N N N -32.888 -25.783 9.373 -6.788 -0.656 1.458 C05 A1FDN 4 A1FDN C07 C5 C 0 1 N N N N N N -31.607 -25.531 11.483 -4.676 -1.518 0.402 C07 A1FDN 5 A1FDN C08 C6 C 0 1 N N N N N N -31.008 -24.137 11.654 -3.674 -0.372 0.250 C08 A1FDN 6 A1FDN C10 C7 C 0 1 Y N N N N N -31.757 -23.193 13.873 -1.229 -0.055 0.147 C10 A1FDN 7 A1FDN C12 C8 C 0 1 Y N N N N N -33.839 -22.245 14.115 -0.437 2.095 -0.102 C12 A1FDN 8 A1FDN C13 C9 C 0 1 Y N N N N N -33.488 -21.869 15.421 0.860 1.612 -0.091 C13 A1FDN 9 A1FDN C14 C10 C 0 1 N N N N N N -34.481 -21.062 16.276 2.033 2.549 -0.225 C14 A1FDN 10 A1FDN C18 C11 C 0 1 Y N N N N N -32.206 -22.180 15.872 1.057 0.236 0.051 C18 A1FDN 11 A1FDN C19 C12 C 0 1 Y N N N N N -31.609 -21.964 17.244 2.427 -0.331 0.068 C19 A1FDN 12 A1FDN C20 C13 C 0 1 Y N N N N N -30.379 -21.372 17.420 3.367 0.146 0.983 C20 A1FDN 13 A1FDN C21 C14 C 0 1 Y N N N N N -29.858 -21.302 18.705 4.639 -0.379 1.000 C21 A1FDN 14 A1FDN C22 C15 C 0 1 Y N N N N N -30.559 -21.851 19.777 4.990 -1.391 0.100 C22 A1FDN 15 A1FDN C23 C16 C 0 1 N N N N N N -29.978 -21.789 21.190 6.349 -1.954 0.117 C23 A1FDN 16 A1FDN C24 C17 C 0 1 N N N N N N -28.577 -21.205 21.364 6.726 -3.044 -0.853 C24 A1FDN 17 A1FDN C26 C18 C 0 1 Y N N N N N -31.768 -22.480 19.580 4.045 -1.868 -0.816 C26 A1FDN 18 A1FDN C27 C19 C 0 1 Y N N N N N -32.291 -22.553 18.305 2.772 -1.344 -0.826 C27 A1FDN 19 A1FDN F15 F1 F 0 1 N N N N N N -33.850 -19.968 16.799 1.570 3.839 -0.506 F15 A1FDN 20 A1FDN F16 F2 F 0 1 N N N N N N -35.487 -20.630 15.460 2.756 2.564 0.973 F16 A1FDN 21 A1FDN F17 F3 F 0 1 N N N N N N -34.996 -21.826 17.273 2.862 2.114 -1.264 F17 A1FDN 22 A1FDN N04 N1 N 0 1 Y N N N N N -32.639 -26.199 8.117 -7.945 -0.217 1.045 N04 A1FDN 23 A1FDN N06 N2 N 0 1 Y N N N N N -31.767 -25.872 10.068 -6.039 -0.981 0.382 N06 A1FDN 24 A1FDN N09 N3 N 0 1 N N N N N N -30.783 -23.927 13.080 -2.311 -0.909 0.269 N09 A1FDN 25 A1FDN N11 N4 N 0 1 Y N N N N N -32.953 -22.920 13.383 -1.445 1.246 0.018 N11 A1FDN 26 A1FDN N28 N5 N 0 1 Y N N N N N -31.400 -22.866 15.097 -0.005 -0.558 0.167 N28 A1FDN 27 A1FDN O25 O1 O 0 1 N N N N N N -30.592 -22.220 22.120 7.167 -1.540 0.911 O25 A1FDN 28 A1FDN H013 H1 H 0 0 N N N N N N -28.779 -25.632 9.650 -6.651 -1.916 -2.487 H013 A1FDN 29 A1FDN H012 H2 H 0 0 N N N N N N -29.379 -26.802 10.873 -6.876 -0.177 -2.794 H012 A1FDN 30 A1FDN H011 H3 H 0 0 N N N N N N -28.913 -27.375 9.236 -5.295 -0.787 -2.251 H011 A1FDN 31 A1FDN H031 H4 H 0 0 N N N N N N -30.794 -26.908 7.217 -8.803 0.065 -0.918 H031 A1FDN 32 A1FDN H051 H5 H 0 0 N N N N N N -33.840 -25.436 9.748 -6.481 -0.748 2.490 H051 A1FDN 33 A1FDN H071 H6 H 0 0 N N N N N N -32.592 -25.560 11.972 -4.551 -2.222 -0.421 H071 A1FDN 34 A1FDN H072 H7 H 0 0 N N N N N N -30.941 -26.268 11.956 -4.501 -2.031 1.348 H072 A1FDN 35 A1FDN H081 H8 H 0 0 N N N N N N -30.055 -24.069 11.110 -3.849 0.141 -0.696 H081 A1FDN 36 A1FDN H082 H9 H 0 0 N N N N N N -31.706 -23.379 11.268 -3.799 0.332 1.073 H082 A1FDN 37 A1FDN H121 H10 H 0 0 N N N N N N -34.808 -21.992 13.711 -0.624 3.154 -0.206 H121 A1FDN 38 A1FDN H201 H11 H 0 0 N N N N N N -29.832 -20.972 16.579 3.096 0.928 1.677 H201 A1FDN 39 A1FDN H211 H12 H 0 0 N N N N N N -28.906 -20.820 18.874 5.367 -0.009 1.707 H211 A1FDN 40 A1FDN H242 H13 H 0 0 N N N N N N -28.285 -21.261 22.423 7.118 -2.598 -1.766 H242 A1FDN 41 A1FDN H243 H14 H 0 0 N N N N N N -27.862 -21.779 20.756 7.486 -3.683 -0.404 H243 A1FDN 42 A1FDN H241 H15 H 0 0 N N N N N N -28.575 -20.154 21.038 5.844 -3.641 -1.089 H241 A1FDN 43 A1FDN H261 H16 H 0 0 N N N N N N -32.301 -22.912 20.414 4.314 -2.650 -1.511 H261 A1FDN 44 A1FDN H271 H17 H 0 0 N N N N N N -33.226 -23.065 18.131 2.042 -1.715 -1.530 H271 A1FDN 45 A1FDN H091 H18 H 0 0 N N N N N N -30.698 -24.833 13.495 -2.167 -1.863 0.368 H091 A1FDN 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1FDN C02 C01 SING N N 1 A1FDN C03 C02 DOUB Y N 2 A1FDN N04 C03 SING Y N 3 A1FDN C05 N04 DOUB Y N 4 A1FDN N06 C05 SING Y N 5 A1FDN C07 N06 SING N N 6 A1FDN C08 C07 SING N N 7 A1FDN N09 C08 SING N N 8 A1FDN C10 N09 SING N N 9 A1FDN N11 C10 DOUB Y N 10 A1FDN C12 N11 SING Y N 11 A1FDN C13 C12 DOUB Y N 12 A1FDN F15 C14 SING N N 13 A1FDN F16 C14 SING N N 14 A1FDN F17 C14 SING N N 15 A1FDN C14 C13 SING N N 16 A1FDN C18 C13 SING Y N 17 A1FDN C20 C19 DOUB Y N 18 A1FDN C21 C20 SING Y N 19 A1FDN C22 C21 DOUB Y N 20 A1FDN C24 C23 SING N N 21 A1FDN O25 C23 DOUB N N 22 A1FDN C23 C22 SING N N 23 A1FDN C26 C22 SING Y N 24 A1FDN C27 C26 DOUB Y N 25 A1FDN C19 C18 SING N N 26 A1FDN N28 C18 DOUB Y N 27 A1FDN C02 N06 SING Y N 28 A1FDN C10 N28 SING Y N 29 A1FDN C19 C27 SING Y N 30 A1FDN C01 H013 SING N N 31 A1FDN C01 H012 SING N N 32 A1FDN C01 H011 SING N N 33 A1FDN C03 H031 SING N N 34 A1FDN C05 H051 SING N N 35 A1FDN C07 H071 SING N N 36 A1FDN C07 H072 SING N N 37 A1FDN C08 H081 SING N N 38 A1FDN C08 H082 SING N N 39 A1FDN C12 H121 SING N N 40 A1FDN C20 H201 SING N N 41 A1FDN C21 H211 SING N N 42 A1FDN C24 H242 SING N N 43 A1FDN C24 H243 SING N N 44 A1FDN C24 H241 SING N N 45 A1FDN C26 H261 SING N N 46 A1FDN C27 H271 SING N N 47 A1FDN N09 H091 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1FDN InChI InChI 1.06 "InChI=1S/C19H18F3N5O/c1-12-9-23-11-27(12)8-7-24-18-25-10-16(19(20,21)22)17(26-18)15-5-3-14(4-6-15)13(2)28/h3-6,9-11H,7-8H2,1-2H3,(H,24,25,26)" A1FDN InChIKey InChI 1.06 YNXZCYXYDKMYKS-UHFFFAOYSA-N A1FDN SMILES_CANONICAL CACTVS 3.385 "CC(=O)c1ccc(cc1)c2nc(NCCn3cncc3C)ncc2C(F)(F)F" A1FDN SMILES CACTVS 3.385 "CC(=O)c1ccc(cc1)c2nc(NCCn3cncc3C)ncc2C(F)(F)F" A1FDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)C(=O)C)C(F)(F)F" A1FDN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)C(=O)C)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1FDN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[4-[2-[2-(5-methylimidazol-1-yl)ethylamino]-5-(trifluoromethyl)pyrimidin-4-yl]phenyl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1FDN "Create component" 2026-08-05 PDBC A1FDN "Initial release" 2026-11-11 RCSB #