data_A1FDO # _chem_comp.id A1FDO _chem_comp.name "~{N}-[2-(5-methylimidazol-1-yl)ethyl]-4-(4-methylsulfonylphenyl)-5-(trifluoromethyl)pyrimidin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 F3 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-08-05 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.428 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1FDO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 44IB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1FDO C01 C1 C 0 1 N N N N N N -29.360 -26.443 9.722 -6.914 -1.018 -2.193 C01 A1FDO 1 A1FDO C02 C2 C 0 1 Y N N N N N -30.802 -26.228 9.292 -7.330 -0.916 -0.748 C02 A1FDO 2 A1FDO C03 C3 C 0 1 Y N N N N N -31.323 -26.469 8.051 -8.536 -0.537 -0.284 C03 A1FDO 3 A1FDO C05 C4 C 0 1 Y N N N N N -32.938 -25.758 9.288 -7.313 -0.970 1.440 C05 A1FDO 4 A1FDO C07 C5 C 0 1 N N N N N N -31.891 -25.426 11.446 -5.163 -1.652 0.331 C07 A1FDO 5 A1FDO C08 C6 C 0 1 N N N N N N -30.687 -25.044 12.287 -4.231 -0.442 0.233 C08 A1FDO 6 A1FDO C10 C7 C 0 1 Y N N N N N -31.763 -23.048 13.709 -1.810 0.023 0.134 C10 A1FDO 7 A1FDO C12 C8 C 0 1 Y N N N N N -33.874 -22.129 14.122 -1.147 2.226 -0.010 C12 A1FDO 8 A1FDO C13 C9 C 0 1 Y N N N N N -33.477 -21.816 15.438 0.176 1.820 -0.031 C13 A1FDO 9 A1FDO C14 C10 C 0 1 N N N N N N -34.498 -21.062 16.345 1.291 2.830 -0.123 C14 A1FDO 10 A1FDO C18 C11 C 0 1 Y N N N N N -32.148 -22.094 15.799 0.454 0.453 0.041 C18 A1FDO 11 A1FDO C19 C12 C 0 1 Y N N N N N -31.479 -21.970 17.178 1.855 -0.033 0.023 C19 A1FDO 12 A1FDO C20 C13 C 0 1 Y N N N N N -32.182 -22.625 18.184 2.776 0.452 0.950 C20 A1FDO 13 A1FDO C21 C14 C 0 1 Y N N N N N -31.658 -22.696 19.475 4.078 -0.004 0.928 C21 A1FDO 14 A1FDO C22 C15 C 0 1 Y N N N N N -30.414 -22.173 19.744 4.471 -0.939 -0.013 C22 A1FDO 15 A1FDO C24 C16 C 0 1 N N N N N N -29.854 -24.096 21.999 6.130 -2.958 1.065 C24 A1FDO 16 A1FDO C27 C17 C 0 1 Y N N N N N -29.676 -21.569 18.715 3.562 -1.422 -0.936 C27 A1FDO 17 A1FDO C28 C18 C 0 1 Y N N N N N -30.200 -21.484 17.417 2.255 -0.979 -0.919 C28 A1FDO 18 A1FDO F15 F1 F 0 1 N N N N N N -33.951 -19.876 16.790 0.751 4.103 -0.337 F15 A1FDO 19 A1FDO F16 F2 F 0 1 N N N N N N -35.548 -20.662 15.556 2.022 2.828 1.070 F16 A1FDO 20 A1FDO F17 F3 F 0 1 N N N N N N -34.951 -21.808 17.390 2.135 2.497 -1.188 F17 A1FDO 21 A1FDO N04 N1 N 0 1 Y N N N N N -32.638 -26.156 8.051 -8.498 -0.579 1.056 N04 A1FDO 22 A1FDO N06 N2 N 0 1 Y N N N N N -31.812 -25.804 10.028 -6.555 -1.195 0.346 N06 A1FDO 23 A1FDO N09 N3 N 0 1 N N N N N N -30.802 -23.657 12.760 -2.839 -0.899 0.218 N09 A1FDO 24 A1FDO N11 N4 N 0 1 Y N N N N N -33.003 -22.760 13.312 -2.102 1.314 0.072 N11 A1FDO 25 A1FDO N29 N5 N 0 1 Y N N N N N -31.353 -22.735 14.937 -0.558 -0.408 0.122 N29 A1FDO 26 A1FDO O25 O1 O 0 1 N N N N N N -30.556 -21.611 22.454 6.350 -1.916 -1.382 O25 A1FDO 27 A1FDO O26 O2 O 0 1 N N N N N N -28.436 -21.776 21.556 6.883 -0.452 0.541 O26 A1FDO 28 A1FDO S23 S1 S 0 1 N N N N N N -29.789 -22.346 21.480 6.136 -1.515 -0.035 S23 A1FDO 29 A1FDO H012 H1 H 0 0 N N N N N N -28.785 -25.520 9.554 -7.134 -2.019 -2.564 H012 A1FDO 30 A1FDO H013 H2 H 0 0 N N N N N N -29.331 -26.704 10.790 -7.464 -0.283 -2.782 H013 A1FDO 31 A1FDO H011 H3 H 0 0 N N N N N N -28.920 -27.261 9.133 -5.845 -0.826 -2.278 H011 A1FDO 32 A1FDO H031 H4 H 0 0 N N N N N N -30.771 -26.849 7.204 -9.386 -0.250 -0.886 H031 A1FDO 33 A1FDO H051 H5 H 0 0 N N N N N N -33.913 -25.452 9.636 -6.994 -1.095 2.464 H051 A1FDO 34 A1FDO H071 H6 H 0 0 N N N N N N -32.571 -24.562 11.488 -5.004 -2.304 -0.527 H071 A1FDO 35 A1FDO H072 H7 H 0 0 N N N N N N -32.354 -26.282 11.958 -4.951 -2.200 1.249 H072 A1FDO 36 A1FDO H081 H8 H 0 0 N N N N N N -30.624 -25.717 13.155 -4.444 0.106 -0.685 H081 A1FDO 37 A1FDO H082 H9 H 0 0 N N N N N N -29.776 -25.144 11.679 -4.391 0.210 1.091 H082 A1FDO 38 A1FDO H121 H10 H 0 0 N N N N N N -34.861 -21.867 13.769 -1.396 3.276 -0.059 H121 A1FDO 39 A1FDO H201 H11 H 0 0 N N N N N N -33.137 -23.080 17.965 2.470 1.182 1.685 H201 A1FDO 40 A1FDO H211 H12 H 0 0 N N N N N N -32.229 -23.162 20.264 4.793 0.371 1.646 H211 A1FDO 41 A1FDO H241 H13 H 0 0 N N N N N N -29.282 -24.711 21.289 7.133 -3.384 1.111 H241 A1FDO 42 A1FDO H243 H14 H 0 0 N N N N N N -29.419 -24.197 23.004 5.819 -2.652 2.064 H243 A1FDO 43 A1FDO H242 H15 H 0 0 N N N N N N -30.901 -24.434 22.017 5.436 -3.705 0.681 H242 A1FDO 44 A1FDO H271 H16 H 0 0 N N N N N N -28.696 -21.166 18.924 3.874 -2.152 -1.669 H271 A1FDO 45 A1FDO H281 H17 H 0 0 N N N N N N -29.619 -21.048 16.617 1.545 -1.361 -1.638 H281 A1FDO 46 A1FDO H091 H18 H 0 0 N N N N N N -29.907 -23.462 13.161 -2.639 -1.846 0.268 H091 A1FDO 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1FDO C02 C01 SING N N 1 A1FDO C03 C02 DOUB Y N 2 A1FDO N04 C03 SING Y N 3 A1FDO C05 N04 DOUB Y N 4 A1FDO N06 C05 SING Y N 5 A1FDO C07 N06 SING N N 6 A1FDO C08 C07 SING N N 7 A1FDO N09 C08 SING N N 8 A1FDO C10 N09 SING N N 9 A1FDO N11 C10 DOUB Y N 10 A1FDO C12 N11 SING Y N 11 A1FDO C13 C12 DOUB Y N 12 A1FDO F15 C14 SING N N 13 A1FDO F16 C14 SING N N 14 A1FDO F17 C14 SING N N 15 A1FDO C14 C13 SING N N 16 A1FDO C18 C13 SING Y N 17 A1FDO C20 C19 DOUB Y N 18 A1FDO C21 C20 SING Y N 19 A1FDO C22 C21 DOUB Y N 20 A1FDO C24 S23 SING N N 21 A1FDO O25 S23 DOUB N N 22 A1FDO O26 S23 DOUB N N 23 A1FDO S23 C22 SING N N 24 A1FDO C27 C22 SING Y N 25 A1FDO C28 C27 DOUB Y N 26 A1FDO C19 C18 SING N N 27 A1FDO N29 C18 DOUB Y N 28 A1FDO C02 N06 SING Y N 29 A1FDO C10 N29 SING Y N 30 A1FDO C19 C28 SING Y N 31 A1FDO C01 H012 SING N N 32 A1FDO C01 H013 SING N N 33 A1FDO C01 H011 SING N N 34 A1FDO C03 H031 SING N N 35 A1FDO C05 H051 SING N N 36 A1FDO C07 H071 SING N N 37 A1FDO C07 H072 SING N N 38 A1FDO C08 H081 SING N N 39 A1FDO C08 H082 SING N N 40 A1FDO C12 H121 SING N N 41 A1FDO C20 H201 SING N N 42 A1FDO C21 H211 SING N N 43 A1FDO C24 H241 SING N N 44 A1FDO C24 H243 SING N N 45 A1FDO C24 H242 SING N N 46 A1FDO C27 H271 SING N N 47 A1FDO C28 H281 SING N N 48 A1FDO N09 H091 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1FDO InChI InChI 1.06 "InChI=1S/C18H18F3N5O2S/c1-12-9-22-11-26(12)8-7-23-17-24-10-15(18(19,20)21)16(25-17)13-3-5-14(6-4-13)29(2,27)28/h3-6,9-11H,7-8H2,1-2H3,(H,23,24,25)" A1FDO InChIKey InChI 1.06 BJWROJABCFVQDX-UHFFFAOYSA-N A1FDO SMILES_CANONICAL CACTVS 3.385 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)[S](C)(=O)=O)C(F)(F)F" A1FDO SMILES CACTVS 3.385 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)[S](C)(=O)=O)C(F)(F)F" A1FDO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)S(=O)(=O)C)C(F)(F)F" A1FDO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cncn1CCNc2ncc(c(n2)c3ccc(cc3)S(=O)(=O)C)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1FDO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2-(5-methylimidazol-1-yl)ethyl]-4-(4-methylsulfonylphenyl)-5-(trifluoromethyl)pyrimidin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1FDO "Create component" 2026-08-05 PDBC A1FDO "Initial release" 2026-11-11 RCSB #