data_A1H05 # _chem_comp.id A1H05 _chem_comp.name "(2S,3R,4S)-2-[bis(oxidanyl)methyl]pyrrolidine-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "glycosyrin hydrate form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-21 _chem_comp.pdbx_modified_date 2025-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 149.145 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H05 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RI8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H05 C1 C1 C 0 1 N N R N N N 144.877 116.126 91.427 0.573 -0.723 0.174 C1 A1H05 1 A1H05 C2 C2 C 0 1 N N S N N N 145.885 115.955 92.483 1.700 0.234 0.628 C2 A1H05 2 A1H05 C3 C3 C 0 1 N N N N N N 145.572 117.088 93.445 1.413 1.519 -0.188 C3 A1H05 3 A1H05 C4 C4 C 0 1 N N S N N N 143.616 116.547 92.128 -0.537 0.194 -0.372 C4 A1H05 4 A1H05 C5 C5 C 0 1 N N N N N N 142.585 115.430 92.185 -1.828 -0.022 0.419 C5 A1H05 5 A1H05 N1 N1 N 0 1 N N N N N N 144.057 116.967 93.481 -0.071 1.588 -0.204 N1 A1H05 6 A1H05 O1 O1 O 0 1 N N N N N N 145.246 117.170 90.512 1.048 -1.594 -0.854 O1 A1H05 7 A1H05 O2 O2 O 0 1 N N N N N N 147.224 115.981 92.012 2.982 -0.301 0.295 O2 A1H05 8 A1H05 O3 O3 O 0 1 N N N N N N 141.460 115.874 92.898 -2.851 0.832 -0.095 O3 A1H05 9 A1H05 O4 O4 O 0 1 N N N N N N 142.163 115.026 90.901 -2.240 -1.385 0.295 O4 A1H05 10 A1H05 H1 H1 H 0 1 N N N N N N 144.713 115.177 90.895 0.204 -1.301 1.021 H1 A1H05 11 A1H05 H2 H2 H 0 1 N N N N N N 145.697 115.003 93.001 1.629 0.432 1.698 H2 A1H05 12 A1H05 H3 H3 H 0 1 N N N N N N 146.021 116.923 94.435 1.833 2.393 0.311 H3 A1H05 13 A1H05 H4 H4 H 0 1 N N N N N N 145.898 118.063 93.053 1.805 1.427 -1.201 H4 A1H05 14 A1H05 H6 H5 H 0 1 N N N N N N 143.180 117.409 91.601 -0.708 -0.018 -1.428 H6 A1H05 15 A1H05 H5 H6 H 0 1 N N N N N N 143.649 117.849 93.716 -0.397 2.172 -0.959 H5 A1H05 16 A1H05 H7 H8 H 0 1 N N N N N N 146.043 116.925 90.056 1.748 -2.195 -0.568 H7 A1H05 17 A1H05 H8 H9 H 0 1 N N N N N N 147.820 115.866 92.743 3.724 0.261 0.559 H8 A1H05 18 A1H05 H10 H10 H 0 1 N N N N N N 141.725 116.151 93.767 -3.059 0.681 -1.027 H10 A1H05 19 A1H05 H11 H11 H 0 1 N N N N N N 141.522 114.330 90.982 -3.054 -1.595 0.773 H11 A1H05 20 A1H05 H9 H12 H 0 1 N N N N N N 143.039 114.575 92.708 -1.654 0.211 1.470 H9 A1H05 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H05 O1 C1 SING N N 1 A1H05 O4 C5 SING N N 2 A1H05 C1 C4 SING N N 3 A1H05 C1 C2 SING N N 4 A1H05 O2 C2 SING N N 5 A1H05 C4 C5 SING N N 6 A1H05 C4 N1 SING N N 7 A1H05 C5 O3 SING N N 8 A1H05 C2 C3 SING N N 9 A1H05 C3 N1 SING N N 10 A1H05 C1 H1 SING N N 11 A1H05 C2 H2 SING N N 12 A1H05 C3 H3 SING N N 13 A1H05 C3 H4 SING N N 14 A1H05 C4 H6 SING N N 15 A1H05 N1 H5 SING N N 16 A1H05 O1 H7 SING N N 17 A1H05 O2 H8 SING N N 18 A1H05 O3 H10 SING N N 19 A1H05 O4 H11 SING N N 20 A1H05 C5 H9 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H05 InChI InChI 1.06 "InChI=1S/C5H11NO4/c7-2-1-6-3(4(2)8)5(9)10/h2-10H,1H2/t2-,3-,4-/m0/s1" A1H05 InChIKey InChI 1.06 GRHIWHJZSCBMFQ-HZLVTQRSSA-N A1H05 SMILES_CANONICAL CACTVS 3.385 "OC(O)[C@H]1NC[C@H](O)[C@@H]1O" A1H05 SMILES CACTVS 3.385 "OC(O)[CH]1NC[CH](O)[CH]1O" A1H05 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H](N1)C(O)O)O)O" A1H05 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(N1)C(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1H05 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R},4~{S})-2-[bis(oxidanyl)methyl]pyrrolidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H05 "Create component" 2023-12-21 PDBE A1H05 "Initial release" 2025-01-01 RCSB A1H05 "Modify synonyms" 2025-02-12 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H05 _pdbx_chem_comp_synonyms.name "glycosyrin hydrate form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #