data_A1H09 # _chem_comp.id A1H09 _chem_comp.name "Haemophilus influenzae type b (Hib) DP3 oligosaccharide " _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H59 O34 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxolan-3-yl] [(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-4-[[(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3-oxidanyl-4-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentoxy]-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-21 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1056.690 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RDF _chem_comp.pdbx_subcomponent_list "BDR A1H0Z BDR A1H0Z BDR A1H0Z" _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H09 C15 C9 C 0 1 N N R N N N -15.557 3.182 -42.306 17.554 3.198 -0.067 C4 BDR 1 A1H09 O16 O30 O 0 1 N N N N N N -16.783 3.774 -42.800 18.931 3.282 -0.496 O4 BDR 2 A1H09 C16 C10 C 0 1 N N R N N N -17.305 4.644 -41.794 19.183 2.052 -1.210 C1 BDR 3 A1H09 O17 O31 O 0 1 N N N N N N -18.226 3.977 -41.016 20.586 1.789 -1.269 O1 BDR 4 A1H09 C8 C28 C 0 1 N N R N N N -16.094 4.973 -40.917 18.466 0.961 -0.383 C2 BDR 5 A1H09 O18 O32 O 0 1 N N N N N N -15.203 5.901 -41.499 17.879 -0.016 -1.244 O2 BDR 6 A1H09 C17 C11 C 0 1 N N S N N N -15.476 3.587 -40.839 17.370 1.733 0.386 C3 BDR 7 A1H09 O19 O33 O 0 1 N N N N N N -14.129 3.548 -40.364 16.073 1.256 0.023 O3 BDR 8 A1H09 C18 C12 C 0 1 N N N N N N -15.511 1.696 -42.580 17.298 4.153 1.100 C5 BDR 9 A1H09 O20 O34 O 0 1 N N N N N N -14.315 1.117 -42.076 17.359 5.503 0.634 O5 BDR 10 A1H09 O12 O3 O 0 1 N N N N N N -15.832 9.785 -36.304 6.493 -1.168 -0.385 O1 A1H0Z 11 A1H09 C13 C22 C 0 1 N N N N N N -16.593 9.662 -37.519 7.569 -1.056 0.548 C1 A1H0Z 12 A1H09 O23 O22 O 0 1 N N N N N N -16.641 9.014 -39.811 9.201 -1.881 -1.032 O2 A1H0Z 13 A1H09 C33 C24 C 0 1 N N S N N N -15.395 7.597 -38.321 9.997 -0.522 0.801 C3 A1H0Z 14 A1H09 O33 O23 O 0 1 N N N N N N -16.066 7.187 -37.125 9.665 0.595 1.628 O3 A1H0Z 15 A1H09 C43 C25 C 0 1 N N R N N N -13.883 7.367 -38.194 11.297 -0.230 0.048 C4 A1H0Z 16 A1H09 O43 O24 O 0 1 N N N N N N -13.150 8.451 -38.775 11.628 -1.347 -0.780 O4 A1H0Z 17 A1H09 C53 C26 C 0 1 N N N N N N -13.429 6.050 -38.790 12.424 0.012 1.053 C5 A1H0Z 18 A1H09 C23 C23 C 0 1 N N S N N N -15.808 9.031 -38.649 8.869 -0.765 -0.204 C2 A1H0Z 19 A1H09 O53 O25 O 0 1 N N N N N N -14.265 4.956 -38.315 13.610 0.399 0.355 O5 A1H0Z 20 A1H09 P2 P3 P 0 1 N N N N N N -14.039 3.490 -38.807 14.997 0.734 1.100 P A1H0Z 21 A1H09 O8 O2 O 0 1 N N N N N N -14.982 2.499 -38.205 15.556 -0.595 1.817 O2P A1H0Z 22 A1H09 O9 O26 O 0 1 N N N N N N -12.569 3.135 -38.464 14.769 1.784 2.118 O1P A1H0Z 23 A1H09 C9 C7 C 0 1 N N R N N N -14.466 12.244 -35.767 3.836 -3.120 0.937 C4 BDR 24 A1H09 O10 O27 O 0 1 N N N N N N -15.889 12.112 -36.003 5.228 -2.756 0.816 O4 BDR 25 A1H09 C6 C27 C 0 1 N N R N N N -16.284 10.838 -35.495 5.227 -1.441 0.218 C1 BDR 26 A1H09 C7 C6 C 0 1 N N R N N N -15.514 10.803 -34.175 4.120 -1.499 -0.859 C2 BDR 27 A1H09 O13 O4 O 0 1 N N N N N N -16.048 11.697 -33.224 3.416 -0.257 -0.920 O2 BDR 28 A1H09 C10 C29 C 0 1 N N S N N N -14.138 11.280 -34.620 3.184 -2.629 -0.374 C3 BDR 29 A1H09 O14 O28 O 0 1 N N N N N N -13.390 11.916 -33.583 1.873 -2.119 -0.122 O3 BDR 30 A1H09 C14 C30 C 0 1 N N N N N N -13.688 11.997 -37.045 3.690 -4.637 1.069 C5 BDR 31 A1H09 O15 O29 O 0 1 N N N N N N -12.356 11.550 -36.800 4.194 -5.056 2.339 O5 BDR 32 A1H09 O11 O12 O 0 1 N N N N N N -15.407 4.575 -30.048 -7.741 0.241 -0.034 O1 A1H0Z 33 A1H09 C11 C8 C 0 1 N N N N N N -15.110 5.898 -30.505 -6.821 -0.644 -0.677 C1 A1H0Z 34 A1H09 O21 O13 O 0 1 N N N N N N -14.721 6.907 -28.355 -5.034 0.982 -0.649 O2 A1H0Z 35 A1H09 C31 C15 C 0 1 N N S N N N -13.590 7.943 -30.201 -4.428 -1.352 -0.800 C3 A1H0Z 36 A1H09 O31 O14 O 0 1 N N N N N N -12.629 8.467 -29.292 -4.793 -2.662 -0.360 O3 A1H0Z 37 A1H09 C41 C16 C 0 1 N N R N N N -14.604 9.061 -30.460 -3.006 -1.036 -0.333 C4 A1H0Z 38 A1H09 O41 O15 O 0 1 N N N N N N -15.594 8.650 -31.404 -2.641 0.274 -0.772 O4 A1H0Z 39 A1H09 C51 C17 C 0 1 N N N N N N -13.935 10.305 -30.998 -2.035 -2.061 -0.923 C5 A1H0Z 40 A1H09 C21 C13 C 0 1 N N S N N N -14.120 6.627 -29.621 -5.399 -0.327 -0.210 C2 A1H0Z 41 A1H09 O51 O16 O 0 1 N N N N N N -13.200 9.910 -32.185 -0.727 -1.836 -0.395 O5 A1H0Z 42 A1H09 P1 P2 P 0 1 N N N N N N -12.336 10.922 -33.006 0.548 -2.733 -0.800 P A1H0Z 43 A1H09 O6 O1 O 0 1 N N N N N N -11.427 11.673 -32.005 0.329 -4.242 -0.281 O2P A1H0Z 44 A1H09 O7 O17 O 0 1 N N N N N N -11.487 10.307 -34.071 0.702 -2.735 -2.272 O1P A1H0Z 45 A1H09 C42 C18 C 0 1 N N R N N N -16.048 2.376 -31.814 -10.727 0.593 -1.928 C4 BDR 46 A1H09 O42 O18 O 0 1 N N N N N N -14.830 3.160 -31.839 -9.307 0.360 -1.794 O4 BDR 47 A1H09 C12 C19 C 0 1 N N R N N N -14.550 3.557 -30.501 -9.105 0.028 -0.403 C1 BDR 48 A1H09 C22 C14 C 0 1 N N R N N N -14.892 2.269 -29.748 -10.029 0.995 0.371 C2 BDR 49 A1H09 O22 O19 O 0 1 N N N N N N -13.990 1.210 -30.002 -10.607 0.337 1.501 O2 BDR 50 A1H09 C32 C20 C 0 1 N N S N N N -16.250 1.950 -30.356 -11.120 1.375 -0.655 C3 BDR 51 A1H09 O32 O20 O 0 1 N N N N N N -16.608 0.570 -30.214 -12.408 0.963 -0.192 O3 BDR 52 A1H09 C52 C21 C 0 1 N N N N N N -17.188 3.179 -32.396 -11.017 1.428 -3.177 C5 BDR 53 A1H09 O52 O21 O 0 1 N N N N N N -18.417 2.481 -32.270 -10.756 0.646 -4.344 O5 BDR 54 A1H09 O1 O5 O 0 1 N N N N N N -11.689 -0.973 -27.758 -22.074 -0.185 1.559 O1 A1H0Z 55 A1H09 C1 C1 C 0 1 N N N N N N -11.769 -1.365 -26.388 -21.111 0.833 1.279 C1 A1H0Z 56 A1H09 O2 O6 O 0 1 N N N N N N -12.658 -0.851 -24.206 -19.400 -0.232 2.612 O2 A1H0Z 57 A1H09 C3 C3 C 0 1 N N S N N N -14.189 -0.687 -26.095 -18.688 1.287 0.872 C3 A1H0Z 58 A1H09 O3 O7 O 0 1 N N N N N N -14.198 -0.596 -27.524 -18.996 1.745 -0.447 O3 A1H0Z 59 A1H09 C4 C4 C 0 1 N N R N N N -15.226 0.287 -25.524 -17.284 0.680 0.886 C4 A1H0Z 60 A1H09 O4 O8 O 0 1 N N N N N N -15.520 -0.013 -24.156 -16.977 0.222 2.205 O4 A1H0Z 61 A1H09 C5 C5 C 0 1 N N N N N N -16.513 0.253 -26.311 -16.265 1.741 0.465 C5 A1H0Z 62 A1H09 C2 C2 C 0 1 N N S N N N -12.748 -0.517 -25.597 -19.707 0.226 1.293 C2 A1H0Z 63 A1H09 O5 O9 O 0 1 N N N N N N -16.156 0.329 -27.721 -14.970 1.145 0.366 O5 A1H0Z 64 A1H09 P P1 P 0 1 N N N N N N -17.255 0.231 -28.828 -13.655 1.972 -0.056 P A1H0Z 65 A1H09 O2P O10 O 0 1 N N N N N N -18.447 1.093 -28.531 -13.331 3.077 1.069 O2P A1H0Z 66 A1H09 O1P O11 O 0 1 N N N N N N -17.596 -1.283 -28.857 -13.889 2.643 -1.355 O1P A1H0Z 67 A1H09 H15 H15 H 0 1 N N N N N N -14.707 3.647 -42.828 16.884 3.426 -0.897 H4 BDR 68 A1H09 H16 H16 H 0 1 N N N N N N -17.716 5.566 -42.231 18.764 2.104 -2.215 H1 BDR 69 A1H09 H57 H57 H 0 1 N N N N N N -18.565 4.565 -40.352 21.094 2.467 -1.735 HO1 BDR 70 A1H09 H49 H49 H 0 1 N N N N N N -16.427 5.297 -39.920 19.161 0.491 0.313 H2 BDR 71 A1H09 H58 H58 H 0 1 N N N N N N -14.478 6.060 -40.906 18.518 -0.489 -1.795 HO2 BDR 72 A1H09 H17 H17 H 0 1 N N N N N N -16.122 2.929 -40.240 17.523 1.644 1.462 H3 BDR 73 A1H09 H18 H18 H 0 1 N N N N N N -16.374 1.215 -42.096 16.311 3.958 1.520 H51 BDR 74 A1H09 H19 H19 H 0 1 N N N N N N -15.560 1.530 -43.666 18.056 4.000 1.868 H52 BDR 75 A1H09 H59 H59 H 0 1 N N N N N N -14.311 0.185 -42.261 17.206 6.164 1.322 HO5 BDR 76 A1H09 H42 H42 H 0 1 N N N N N N -17.477 9.040 -37.317 7.363 -0.244 1.245 H12 A1H0Z 77 A1H09 H41 H41 H 0 1 N N N N N N -16.915 10.666 -37.834 7.670 -1.991 1.099 H11 A1H0Z 78 A1H09 H50 H50 H 0 1 N N N N N N -16.905 9.901 -40.025 9.332 -2.707 -0.545 HO2 A1H0Z 79 A1H09 H44 H44 H 0 1 N N N N N N -15.748 6.963 -39.148 10.127 -1.408 1.421 HC3 A1H0Z 80 A1H09 H51 H51 H 0 1 N N N N N N -15.816 6.296 -36.911 9.534 1.420 1.142 HO3 A1H0Z 81 A1H09 H45 H45 H 0 1 N N N N N N -13.653 7.334 -37.119 11.166 0.656 -0.573 HC4 A1H0Z 82 A1H09 H52 H52 H 0 1 N N N N N N -13.442 9.271 -38.395 11.759 -2.172 -0.293 HO4 A1H0Z 83 A1H09 H46 H46 H 0 1 N N N N N N -12.386 5.861 -38.497 12.133 0.806 1.741 H51 A1H0Z 84 A1H09 H47 H47 H 0 1 N N N N N N -13.497 6.107 -39.886 12.615 -0.903 1.614 H52 A1H0Z 85 A1H09 H43 H43 H 0 1 N N N N N N -14.904 9.629 -38.837 8.738 0.122 -0.825 HC2 A1H0Z 86 A1H09 H10 H10 H 0 1 N N N N N N -14.489 1.842 -37.727 15.728 -1.327 1.209 HOP2 A1H0Z 87 A1H09 H11 H11 H 0 1 N N N N N N -14.250 13.267 -35.425 3.386 -2.620 1.795 H4 BDR 88 A1H09 H48 H48 H 0 1 N N N N N N -17.367 10.787 -35.309 4.992 -0.684 0.965 H1 BDR 89 A1H09 H9 H9 H 0 1 N N N N N N -15.458 9.774 -33.791 4.546 -1.744 -1.832 H2 BDR 90 A1H09 H14 H14 H 0 1 N N N N N N -15.543 11.645 -32.421 3.970 0.498 -1.161 HO2 BDR 91 A1H09 H53 H53 H 0 1 N N N N N N -13.577 10.425 -35.025 3.147 -3.435 -1.107 H3 BDR 92 A1H09 H54 H54 H 0 1 N N N N N N -13.645 12.935 -37.618 2.637 -4.909 0.988 H51 BDR 93 A1H09 H55 H55 H 0 1 N N N N N N -14.213 11.231 -37.635 4.253 -5.127 0.275 H52 BDR 94 A1H09 H56 H56 H 0 1 N N N N N N -11.911 11.410 -37.628 4.133 -6.009 2.492 HO5 BDR 95 A1H09 H13 H13 H 0 1 N N N N N N -16.045 6.476 -30.533 -7.067 -1.674 -0.419 H12 A1H0Z 96 A1H09 H12 H12 H 0 1 N N N N N N -14.690 5.831 -31.519 -6.886 -0.514 -1.757 H11 A1H0Z 97 A1H09 H27 H27 H 0 1 N N N N N N -14.098 7.364 -27.802 -5.050 1.094 -1.610 HO2 A1H0Z 98 A1H09 H28 H28 H 0 1 N N N N N N -13.095 7.712 -31.156 -4.471 -1.309 -1.888 HC3 A1H0Z 99 A1H09 H29 H29 H 0 1 N N N N N N -11.977 7.803 -29.102 -4.777 -2.774 0.600 HO3 A1H0Z 100 A1H09 H30 H30 H 0 1 N N N N N N -15.089 9.312 -29.505 -2.963 -1.079 0.756 HC4 A1H0Z 101 A1H09 H31 H31 H 0 1 N N N N N N -16.029 7.867 -31.087 -2.657 0.385 -1.732 HO4 A1H0Z 102 A1H09 H32 H32 H 0 1 N N N N N N -13.246 10.719 -30.247 -2.365 -3.066 -0.661 H51 A1H0Z 103 A1H09 H33 H33 H 0 1 N N N N N N -14.692 11.060 -31.256 -2.012 -1.957 -2.007 H52 A1H0Z 104 A1H09 H20 H20 H 0 1 N N N N N N -13.257 5.963 -29.465 -5.356 -0.371 0.879 HC2 A1H0Z 105 A1H09 H8 H8 H 0 1 N N N N N N -10.520 11.588 -32.274 0.220 -4.316 0.677 HOP2 A1H0Z 106 A1H09 H34 H34 H 0 1 N N N N N N -15.912 1.470 -32.423 -11.264 -0.355 -1.972 H4 BDR 107 A1H09 H35 H35 H 0 1 N N N N N N -13.489 3.812 -30.361 -9.392 -1.006 -0.215 H1 BDR 108 A1H09 H21 H21 H 0 1 N N N N N N -14.994 2.474 -28.672 -9.476 1.880 0.687 H2 BDR 109 A1H09 H36 H36 H 0 1 N N N N N N -14.255 0.443 -29.508 -9.960 0.025 2.148 HO2 BDR 110 A1H09 H37 H37 H 0 1 N N N N N N -17.013 2.595 -29.896 -11.109 2.447 -0.847 H3 BDR 111 A1H09 H38 H38 H 0 1 N N N N N N -16.989 3.367 -33.461 -12.062 1.737 -3.172 H51 BDR 112 A1H09 H39 H39 H 0 1 N N N N N N -17.262 4.138 -31.862 -10.377 2.310 -3.180 H52 BDR 113 A1H09 H40 H40 H 0 1 N N N N N N -19.118 3.003 -32.642 -10.919 1.113 -5.175 HO5 BDR 114 A1H09 H22 H22 H 0 1 N N N N N N -11.067 -1.530 -28.211 -22.988 0.129 1.566 HO1 A1H0Z 115 A1H09 H2 H2 H 0 1 N N N N N N -10.772 -1.268 -25.934 -21.312 1.262 0.297 H12 A1H0Z 116 A1H09 H1 H1 H 0 1 N N N N N N -12.093 -2.415 -26.340 -21.178 1.614 2.036 H11 A1H0Z 117 A1H09 H23 H23 H 0 1 N N N N N N -13.271 -0.320 -23.712 -19.417 0.463 3.283 HO2 A1H0Z 118 A1H09 H4 H4 H 0 1 N N N N N N -14.510 -1.701 -25.812 -18.729 2.126 1.566 HC3 A1H0Z 119 A1H09 H24 H24 H 0 1 N N N N N N -15.087 -0.700 -27.843 -18.978 1.050 -1.118 HO3 A1H0Z 120 A1H09 H5 H5 H 0 1 N N N N N N -14.809 1.303 -25.591 -17.244 -0.159 0.192 HC4 A1H0Z 121 A1H09 H25 H25 H 0 1 N N N N N N -14.718 0.005 -23.648 -16.994 0.917 2.877 HO4 A1H0Z 122 A1H09 H6 H6 H 0 1 N N N N N N -17.146 1.109 -26.036 -16.550 2.154 -0.503 H51 A1H0Z 123 A1H09 H7 H7 H 0 1 N N N N N N -17.054 -0.683 -26.109 -16.243 2.538 1.208 H52 A1H0Z 124 A1H09 H3 H3 H 0 1 N N N N N N -12.469 0.538 -25.732 -19.667 -0.613 0.599 HC2 A1H0Z 125 A1H09 H26 H26 H 0 1 N N N N N N -19.213 0.544 -28.411 -13.166 2.708 1.947 HOP2 A1H0Z 126 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H09 O16 C15 SING N N 1 A1H09 O16 C16 SING N N 2 A1H09 C18 C15 SING N N 3 A1H09 C18 O20 SING N N 4 A1H09 C15 C17 SING N N 5 A1H09 C16 O17 SING N N 6 A1H09 C16 C8 SING N N 7 A1H09 O18 C8 SING N N 8 A1H09 C8 C17 SING N N 9 A1H09 C17 O19 SING N N 10 A1H09 O19 P2 SING N N 11 A1H09 O23 C23 SING N N 12 A1H09 P2 O9 DOUB N N 13 A1H09 P2 O53 SING N N 14 A1H09 P2 O8 SING N N 15 A1H09 C53 O53 SING N N 16 A1H09 C53 C43 SING N N 17 A1H09 O43 C43 SING N N 18 A1H09 C23 C33 SING N N 19 A1H09 C23 C13 SING N N 20 A1H09 C33 C43 SING N N 21 A1H09 C33 O33 SING N N 22 A1H09 C13 O12 SING N N 23 A1H09 C14 O15 SING N N 24 A1H09 C14 C9 SING N N 25 A1H09 O12 C6 SING N N 26 A1H09 O10 C9 SING N N 27 A1H09 O10 C6 SING N N 28 A1H09 C9 C10 SING N N 29 A1H09 C6 C7 SING N N 30 A1H09 C10 C7 SING N N 31 A1H09 C10 O14 SING N N 32 A1H09 C7 O13 SING N N 33 A1H09 O7 P1 DOUB N N 34 A1H09 O14 P1 SING N N 35 A1H09 P1 O51 SING N N 36 A1H09 P1 O6 SING N N 37 A1H09 C52 O52 SING N N 38 A1H09 C52 C42 SING N N 39 A1H09 O51 C51 SING N N 40 A1H09 O42 C42 SING N N 41 A1H09 O42 C12 SING N N 42 A1H09 C42 C32 SING N N 43 A1H09 O41 C41 SING N N 44 A1H09 C51 C41 SING N N 45 A1H09 C11 O11 SING N N 46 A1H09 C11 C21 SING N N 47 A1H09 C12 O11 SING N N 48 A1H09 C12 C22 SING N N 49 A1H09 C41 C31 SING N N 50 A1H09 C32 O32 SING N N 51 A1H09 C32 C22 SING N N 52 A1H09 O32 P SING N N 53 A1H09 C31 C21 SING N N 54 A1H09 C31 O31 SING N N 55 A1H09 O22 C22 SING N N 56 A1H09 C21 O21 SING N N 57 A1H09 O1P P DOUB N N 58 A1H09 P O2P SING N N 59 A1H09 P O5 SING N N 60 A1H09 O1 C1 SING N N 61 A1H09 O5 C5 SING N N 62 A1H09 O3 C3 SING N N 63 A1H09 C1 C2 SING N N 64 A1H09 C5 C4 SING N N 65 A1H09 C3 C2 SING N N 66 A1H09 C3 C4 SING N N 67 A1H09 C2 O2 SING N N 68 A1H09 C4 O4 SING N N 69 A1H09 C1 H1 SING N N 70 A1H09 C1 H2 SING N N 71 A1H09 C2 H3 SING N N 72 A1H09 C3 H4 SING N N 73 A1H09 C4 H5 SING N N 74 A1H09 C5 H6 SING N N 75 A1H09 C5 H7 SING N N 76 A1H09 O6 H8 SING N N 77 A1H09 C7 H9 SING N N 78 A1H09 O8 H10 SING N N 79 A1H09 C9 H11 SING N N 80 A1H09 C11 H12 SING N N 81 A1H09 C11 H13 SING N N 82 A1H09 O13 H14 SING N N 83 A1H09 C15 H15 SING N N 84 A1H09 C16 H16 SING N N 85 A1H09 C17 H17 SING N N 86 A1H09 C18 H18 SING N N 87 A1H09 C18 H19 SING N N 88 A1H09 C21 H20 SING N N 89 A1H09 C22 H21 SING N N 90 A1H09 O1 H22 SING N N 91 A1H09 O2 H23 SING N N 92 A1H09 O3 H24 SING N N 93 A1H09 O4 H25 SING N N 94 A1H09 O2P H26 SING N N 95 A1H09 O21 H27 SING N N 96 A1H09 C31 H28 SING N N 97 A1H09 O31 H29 SING N N 98 A1H09 C41 H30 SING N N 99 A1H09 O41 H31 SING N N 100 A1H09 C51 H32 SING N N 101 A1H09 C51 H33 SING N N 102 A1H09 C42 H34 SING N N 103 A1H09 C12 H35 SING N N 104 A1H09 O22 H36 SING N N 105 A1H09 C32 H37 SING N N 106 A1H09 C52 H38 SING N N 107 A1H09 C52 H39 SING N N 108 A1H09 O52 H40 SING N N 109 A1H09 C13 H41 SING N N 110 A1H09 C13 H42 SING N N 111 A1H09 C23 H43 SING N N 112 A1H09 C33 H44 SING N N 113 A1H09 C43 H45 SING N N 114 A1H09 C53 H46 SING N N 115 A1H09 C53 H47 SING N N 116 A1H09 C6 H48 SING N N 117 A1H09 C8 H49 SING N N 118 A1H09 O23 H50 SING N N 119 A1H09 O33 H51 SING N N 120 A1H09 O43 H52 SING N N 121 A1H09 C10 H53 SING N N 122 A1H09 C14 H54 SING N N 123 A1H09 C14 H55 SING N N 124 A1H09 O15 H56 SING N N 125 A1H09 O17 H57 SING N N 126 A1H09 O18 H58 SING N N 127 A1H09 O20 H59 SING N N 128 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H09 InChI InChI 1.06 "InChI=1S/C30H59O34P3/c31-1-10(35)19(41)13(38)7-56-66(50,51)63-26-17(3-33)60-29(23(26)45)55-6-12(37)21(43)15(40)9-58-67(52,53)64-27-18(4-34)61-30(24(27)46)54-5-11(36)20(42)14(39)8-57-65(48,49)62-25-16(2-32)59-28(47)22(25)44/h10-47H,1-9H2,(H,48,49)(H,50,51)(H,52,53)/t10-,11-,12-,13+,14+,15+,16+,17+,18+,19-,20-,21-,22+,23+,24+,25+,26+,27+,28+,29+,30+/m0/s1" A1H09 InChIKey InChI 1.06 MUJPLVAWHMKDRT-KFDLCVIWSA-N A1H09 SMILES_CANONICAL CACTVS 3.385 "OC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[C@H]1[C@@H](O)[C@H](OC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[C@H]2[C@@H](O)[C@H](OC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[C@H]3[C@@H](O)[C@H](O)O[C@@H]3CO)O[C@@H]2CO)O[C@@H]1CO" A1H09 SMILES CACTVS 3.385 "OC[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[CH]1[CH](O)[CH](OC[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[CH]2[CH](O)[CH](OC[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[CH]3[CH](O)[CH](O)O[CH]3CO)O[CH]2CO)O[CH]1CO" A1H09 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@H]([C@@H](O1)O)O)OP(=O)(O)OC[C@H]([C@H]([C@H](CO[C@H]2[C@@H]([C@@H]([C@H](O2)CO)OP(=O)(O)OC[C@H]([C@H]([C@H](CO[C@H]3[C@@H]([C@@H]([C@H](O3)CO)OP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)O)O)O)O)O)O)O)O" A1H09 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(O1)O)O)OP(=O)(O)OCC(C(C(COC2C(C(C(O2)CO)OP(=O)(O)OCC(C(C(COC3C(C(C(O3)CO)OP(=O)(O)OCC(C(C(CO)O)O)O)O)O)O)O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1H09 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxolan-3-yl] [(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-4-[[(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3-oxidanyl-4-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentoxy]-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H09 "Create component" 2023-12-21 PDBE A1H09 "Initial release" 2024-05-15 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H09 _pdbx_chem_comp_synonyms.name "[(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxolan-3-yl] [(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-4-[[(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3-oxidanyl-4-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentoxy]-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #