data_A1H0W # _chem_comp.id A1H0W _chem_comp.name "1-(5-methoxy-1~{H}-benzimidazol-2-yl)guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms O-PHOSPHONO-D-THREONINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-18 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 205.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H0W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RHW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H0W CAO C1 C 0 1 N N N N N N 4.797 -17.781 15.788 -5.222 0.370 -0.013 CAO A1H0W 1 A1H0W OAN O1 O 0 1 N N N N N N 4.871 -17.000 14.573 -4.224 -0.648 0.078 OAN A1H0W 2 A1H0W CAC C2 C 0 1 Y N N N N N 5.424 -15.756 14.773 -2.926 -0.247 0.020 CAC A1H0W 3 A1H0W CAD C3 C 0 1 Y N N N N N 6.777 -15.526 14.453 -1.913 -1.184 0.097 CAD A1H0W 4 A1H0W CAA C4 C 0 1 Y N N N N N 4.633 -14.709 15.279 -2.625 1.104 -0.122 CAA A1H0W 5 A1H0W CAF C5 C 0 1 Y N N N N N 5.253 -13.456 15.472 -1.312 1.523 -0.182 CAF A1H0W 6 A1H0W CAB C6 C 0 1 Y N N N N N 6.564 -13.301 15.163 -0.285 0.596 -0.100 CAB A1H0W 7 A1H0W NAI N1 N 0 1 Y N N N N N 7.329 -12.207 15.254 1.098 0.689 -0.127 NAI A1H0W 8 A1H0W CAE C7 C 0 1 Y N N N N N 7.314 -14.312 14.637 -0.581 -0.771 0.038 CAE A1H0W 9 A1H0W NAG N2 N 0 1 Y N N N N N 8.552 -13.858 14.432 0.605 -1.433 0.086 NAG A1H0W 10 A1H0W CAH C8 C 0 1 Y N N N N N 8.524 -12.556 14.807 1.591 -0.577 -0.004 CAH A1H0W 11 A1H0W NAJ N3 N 0 1 N N N N N N 9.540 -11.697 14.837 2.934 -0.909 0.011 NAJ A1H0W 12 A1H0W CAK C9 C 0 1 N N N N N N 10.815 -11.999 14.554 3.889 0.085 0.039 CAK A1H0W 13 A1H0W NAM N4 N 0 1 N N N N N N 11.776 -11.061 14.707 3.566 1.336 0.508 NAM A1H0W 14 A1H0W NAL N5 N 0 1 N N N N N N 11.074 -13.251 14.080 5.098 -0.161 -0.380 NAL A1H0W 15 A1H0W H1 H1 H 0 1 N N N N N N 4.349 -18.761 15.568 -6.211 -0.084 0.046 H1 A1H0W 16 A1H0W H2 H2 H 0 1 N N N N N N 5.809 -17.924 16.194 -5.097 1.076 0.808 H2 A1H0W 17 A1H0W H3 H3 H 0 1 N N N N N N 4.177 -17.252 16.527 -5.120 0.895 -0.963 H3 A1H0W 18 A1H0W H4 H4 H 0 1 N N N N N N 7.382 -16.329 14.059 -2.152 -2.232 0.204 H4 A1H0W 19 A1H0W H5 H5 H 0 1 N N N N N N 3.589 -14.858 15.511 -3.424 1.828 -0.186 H5 A1H0W 20 A1H0W H6 H6 H 0 1 N N N N N N 4.686 -12.625 15.864 -1.085 2.573 -0.292 H6 A1H0W 21 A1H0W H7 H7 H 0 1 N N N N N N 7.053 -11.307 15.592 1.618 1.503 -0.218 H7 A1H0W 22 A1H0W H9 H9 H 0 1 N N N N N N 9.336 -10.751 15.091 3.204 -1.840 0.003 H9 A1H0W 23 A1H0W H10 H10 H 0 1 N N N N N N 11.535 -10.146 15.030 2.762 1.464 1.035 H10 A1H0W 24 A1H0W H11 H11 H 0 1 N N N N N N 12.728 -11.282 14.497 4.141 2.092 0.311 H11 A1H0W 25 A1H0W H12 H12 H 0 1 N N N N N N 10.243 -13.802 14.003 5.346 -1.062 -0.642 H12 A1H0W 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H0W NAL CAK DOUB N N 1 A1H0W NAG CAE SING Y N 2 A1H0W NAG CAH DOUB Y N 3 A1H0W CAD CAE DOUB Y N 4 A1H0W CAD CAC SING Y N 5 A1H0W CAK NAM SING N N 6 A1H0W CAK NAJ SING N N 7 A1H0W OAN CAC SING N N 8 A1H0W OAN CAO SING N N 9 A1H0W CAE CAB SING Y N 10 A1H0W CAC CAA DOUB Y N 11 A1H0W CAH NAJ SING N N 12 A1H0W CAH NAI SING Y N 13 A1H0W CAB NAI SING Y N 14 A1H0W CAB CAF DOUB Y N 15 A1H0W CAA CAF SING Y N 16 A1H0W CAO H1 SING N N 17 A1H0W CAO H2 SING N N 18 A1H0W CAO H3 SING N N 19 A1H0W CAD H4 SING N N 20 A1H0W CAA H5 SING N N 21 A1H0W CAF H6 SING N N 22 A1H0W NAI H7 SING N N 23 A1H0W NAJ H9 SING N N 24 A1H0W NAM H10 SING N N 25 A1H0W NAM H11 SING N N 26 A1H0W NAL H12 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H0W InChI InChI 1.06 "InChI=1S/C9H11N5O/c1-15-5-2-3-6-7(4-5)13-9(12-6)14-8(10)11/h2-4H,1H3,(H5,10,11,12,13,14)" A1H0W InChIKey InChI 1.06 UNAQOMVIYOSKDN-UHFFFAOYSA-N A1H0W SMILES_CANONICAL CACTVS 3.385 "COc1ccc2[nH]c(NC(N)=N)nc2c1" A1H0W SMILES CACTVS 3.385 "COc1ccc2[nH]c(NC(N)=N)nc2c1" A1H0W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/Nc1[nH]c2ccc(cc2n1)OC" A1H0W SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)nc([nH]2)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id A1H0W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(5-methoxy-1~{H}-benzimidazol-2-yl)guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H0W "Create component" 2023-12-18 PDBE A1H0W "Initial release" 2024-11-20 RCSB #