data_A1H0Z # _chem_comp.id A1H0Z _chem_comp.name D-Ribitol-5-phosphate _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H13 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2R,3S,4S)-2,3,4,5-tetrakis(oxidanyl)pentyl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-20 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.126 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H0Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RDF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H0Z O1 O1 O 0 1 N Y N N N N -15.832 9.785 -36.304 -5.556 0.179 -0.308 O1 A1H0Z 1 A1H0Z C1 C1 C 0 1 N N N N N N -16.593 9.662 -37.519 -4.354 0.626 0.324 C1 A1H0Z 2 A1H0Z O2 O2 O 0 1 N N N N N N -16.641 9.014 -39.811 -3.251 -1.505 0.030 O2 A1H0Z 3 A1H0Z C3 C2 C 0 1 N N S N N N -15.395 7.597 -38.321 -1.862 0.452 0.308 C3 A1H0Z 4 A1H0Z O3 O3 O 0 1 N N N N N N -16.066 7.187 -37.125 -1.767 1.844 -0.001 O3 A1H0Z 5 A1H0Z C4 C3 C 0 1 N N R N N N -13.883 7.367 -38.194 -0.664 -0.286 -0.294 C4 A1H0Z 6 A1H0Z O4 O4 O 0 1 N N N N N N -13.150 8.451 -38.775 -0.759 -1.678 0.014 O4 A1H0Z 7 A1H0Z C5 C4 C 0 1 N N N N N N -13.429 6.050 -38.790 0.631 0.279 0.292 C5 A1H0Z 8 A1H0Z C2 C5 C 0 1 N N S N N N -15.808 9.031 -38.649 -3.157 -0.113 -0.278 C2 A1H0Z 9 A1H0Z O5 O5 O 0 1 N N N N N N -14.265 4.956 -38.315 1.751 -0.328 -0.354 O5 A1H0Z 10 A1H0Z P P1 P 0 1 N N N N N N -14.039 3.490 -38.807 3.277 0.031 0.014 P A1H0Z 11 A1H0Z O2P O6 O 0 1 N N N N N N -12.569 3.135 -38.464 3.574 1.566 -0.370 O2P A1H0Z 12 A1H0Z O1P O7 O 0 1 N N N N N N -14.982 2.499 -38.205 3.494 -0.166 1.464 O1P A1H0Z 13 A1H0Z HO1 H1 H 0 1 N Y N N N N -16.371 10.185 -35.632 -6.357 0.606 0.025 HO1 A1H0Z 14 A1H0Z H12 H2 H 0 1 N N N N N N -16.915 10.666 -37.834 -4.237 1.698 0.165 H12 A1H0Z 15 A1H0Z H11 H3 H 0 1 N N N N N N -17.477 9.040 -37.317 -4.407 0.420 1.393 H11 A1H0Z 16 A1H0Z HO2 H4 H 0 1 N N N N N N -16.905 9.901 -40.025 -3.259 -1.698 0.977 HO2 A1H0Z 17 A1H0Z HC3 H5 H 0 1 N N N N N N -15.748 6.963 -39.148 -1.864 0.319 1.390 HC3 A1H0Z 18 A1H0Z HO3 H6 H 0 1 N N N N N N -15.816 6.296 -36.911 -1.759 2.038 -0.948 HO3 A1H0Z 19 A1H0Z HC4 H7 H 0 1 N N N N N N -13.653 7.334 -37.119 -0.662 -0.153 -1.376 HC4 A1H0Z 20 A1H0Z HO4 H8 H 0 1 N N N N N N -13.442 9.271 -38.395 -0.766 -1.872 0.961 HO4 A1H0Z 21 A1H0Z H51 H9 H 0 1 N N N N N N -12.386 5.861 -38.497 0.661 1.357 0.134 H51 A1H0Z 22 A1H0Z H52 H10 H 0 1 N N N N N N -13.497 6.107 -39.886 0.669 0.067 1.360 H52 A1H0Z 23 A1H0Z HC2 H11 H 0 1 N N N N N N -14.904 9.629 -38.837 -3.154 0.020 -1.360 HC2 A1H0Z 24 A1H0Z HOP2 H12 H 0 0 N N N N N N -12.549 2.348 -37.932 3.452 1.768 -1.308 HOP2 A1H0Z 25 A1H0Z O3P O1P O 0 1 N Y N N N N ? ? ? 4.269 -0.931 -0.813 O3P A1H0Z 26 A1H0Z HOP3 H13 H 0 0 N Y N N N N ? ? ? 5.207 -0.770 -0.640 HOP3 A1H0Z 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H0Z O2 C2 SING N N 1 A1H0Z P O2P SING N N 2 A1H0Z P O5 SING N N 3 A1H0Z P O1P DOUB N N 4 A1H0Z C5 O5 SING N N 5 A1H0Z C5 C4 SING N N 6 A1H0Z O4 C4 SING N N 7 A1H0Z C2 C3 SING N N 8 A1H0Z C2 C1 SING N N 9 A1H0Z C3 C4 SING N N 10 A1H0Z C3 O3 SING N N 11 A1H0Z C1 O1 SING N N 12 A1H0Z O1 HO1 SING N N 13 A1H0Z C1 H12 SING N N 14 A1H0Z C1 H11 SING N N 15 A1H0Z O2 HO2 SING N N 16 A1H0Z C3 HC3 SING N N 17 A1H0Z O3 HO3 SING N N 18 A1H0Z C4 HC4 SING N N 19 A1H0Z O4 HO4 SING N N 20 A1H0Z C5 H51 SING N N 21 A1H0Z C5 H52 SING N N 22 A1H0Z C2 HC2 SING N N 23 A1H0Z O2P HOP2 SING N N 24 A1H0Z P O3P SING N N 25 A1H0Z O3P HOP3 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H0Z InChI InChI 1.06 "InChI=1S/C5H13O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1" A1H0Z InChIKey InChI 1.06 VJDOAZKNBQCAGE-LMVFSUKVSA-N A1H0Z SMILES_CANONICAL CACTVS 3.385 "OC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O" A1H0Z SMILES CACTVS 3.385 "OC[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O" A1H0Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)O" A1H0Z SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(C(COP(=O)(O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1H0Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H0Z _pdbx_chem_comp_synonyms.name "[(2R,3S,4S)-2,3,4,5-tetrakis(oxidanyl)pentyl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H0Z "Create component" 2023-12-20 PDBE A1H0Z "Initial release" 2024-05-15 RCSB #