data_A1H14 # _chem_comp.id A1H14 _chem_comp.name "Ibrutinib (unbound form)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[(3S)-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]prop-2-en-1-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-11 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.497 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H14 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RDZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H14 N1 N1 N 0 1 Y N N N N N -1.729 -16.615 27.212 -0.890 0.167 -0.713 N1 A1H14 1 A1H14 N3 N2 N 0 1 Y N N N N N -4.377 -14.815 30.066 -1.096 4.329 1.046 N3 A1H14 2 A1H14 C4 C1 C 0 1 Y N N N N N 5.699 -13.044 26.146 5.871 -2.780 1.310 C4 A1H14 3 A1H14 C5 C2 C 0 1 Y N N N N N 4.341 -12.761 26.102 5.324 -1.686 0.669 C5 A1H14 4 A1H14 C6 C3 C 0 1 Y N N N N N 3.803 -11.958 27.076 6.122 -0.882 -0.132 C6 A1H14 5 A1H14 C7 C4 C 0 1 Y N N N N N 1.462 -12.615 27.178 4.244 0.389 -0.666 C7 A1H14 6 A1H14 C8 C5 C 0 1 Y N N N N N 1.709 -13.940 27.480 3.701 0.887 0.511 C8 A1H14 7 A1H14 C10 C6 C 0 1 Y N N N N N 0.170 -12.171 26.999 3.420 0.096 -1.745 C10 A1H14 8 A1H14 C13 C7 C 0 1 Y N N N N N -1.796 -15.336 27.495 0.049 1.014 -0.363 C13 A1H14 9 A1H14 C15 C8 C 0 1 Y N N N N N -3.369 -14.447 29.336 -0.179 3.445 0.665 C15 A1H14 10 A1H14 C17 C9 C 0 1 Y N N N N N -4.051 -16.118 27.531 -1.998 1.973 0.060 C17 A1H14 11 A1H14 C20 C10 C 0 1 N N N N N N -2.419 -19.189 25.931 -3.539 -0.260 -2.223 C20 A1H14 12 A1H14 C21 C11 C 0 1 N N N N N N -2.642 -20.055 24.693 -4.892 -0.916 -2.507 C21 A1H14 13 A1H14 C22 C12 C 0 1 N N N N N N -4.098 -20.469 24.587 -4.997 -2.223 -1.715 C22 A1H14 14 A1H14 C24 C13 C 0 1 N N N N N N -5.902 -18.855 22.439 -5.438 -1.924 2.048 C24 A1H14 15 A1H14 C1 C14 C 0 1 Y N N N N N 4.589 -11.409 28.062 7.469 -1.178 -0.286 C1 A1H14 16 A1H14 C2 C15 C 0 1 Y N N N N N 5.942 -11.720 28.102 8.011 -2.273 0.358 C2 A1H14 17 A1H14 C3 C16 C 0 1 Y N N N N N 6.500 -12.532 27.141 7.215 -3.070 1.160 C3 A1H14 18 A1H14 O1 O1 O 0 1 N N N N N N 2.453 -11.639 27.065 5.585 0.194 -0.765 O1 A1H14 19 A1H14 C9 C17 C 0 1 Y N N N N N 0.657 -14.837 27.561 2.341 1.091 0.612 C9 A1H14 20 A1H14 C11 C18 C 0 1 Y N N N N N -0.881 -13.064 27.094 2.060 0.297 -1.650 C11 A1H14 21 A1H14 C12 C19 C 0 1 Y N N N N N -0.653 -14.405 27.389 1.511 0.797 -0.469 C12 A1H14 22 A1H14 C14 C20 C 0 1 Y N N N N N -3.177 -14.886 27.910 -0.614 2.213 0.149 C14 A1H14 23 A1H14 N2 N3 N 0 1 N N N N N N -2.521 -13.470 29.822 1.168 3.731 0.773 N2 A1H14 24 A1H14 C16 C21 C 0 1 Y N N N N N -5.017 -15.946 29.688 -2.386 4.061 0.943 C16 A1H14 25 A1H14 N4 N4 N 0 1 Y N N N N N -4.779 -16.719 28.657 -2.839 2.923 0.468 N4 A1H14 26 A1H14 N5 N5 N 0 1 Y N N N N N -3.027 -16.955 26.896 -2.149 0.724 -0.466 N5 A1H14 27 A1H14 C18 C22 C 0 1 N N S N N N -3.321 -17.967 25.836 -3.432 0.068 -0.732 C18 A1H14 28 A1H14 C19 C23 C 0 1 N N N N N N -4.782 -18.426 25.813 -3.521 -1.228 0.080 C19 A1H14 29 A1H14 N6 N6 N 0 1 N N N N N N -5.024 -19.326 24.678 -4.751 -1.938 -0.295 N6 A1H14 30 A1H14 C23 C24 C 0 1 N N N N N N -6.104 -19.210 23.874 -5.638 -2.320 0.646 C23 A1H14 31 A1H14 O2 O2 O 0 1 N N N N N N -7.237 -19.329 24.340 -6.603 -2.991 0.335 O2 A1H14 32 A1H14 C25 C25 C 0 1 N N N N N N -6.879 -18.388 21.706 -6.252 -2.387 2.992 C25 A1H14 33 A1H14 H4 H1 H 0 1 N N N N N N 6.134 -13.677 25.387 5.251 -3.406 1.934 H4 A1H14 34 A1H14 H5 H2 H 0 1 N N N N N N 3.720 -13.165 25.316 4.275 -1.458 0.789 H5 A1H14 35 A1H14 H6 H3 H 0 1 N N N N N N 2.721 -14.276 27.653 4.345 1.115 1.348 H6 A1H14 36 A1H14 H8 H4 H 0 1 N N N N N N -0.021 -11.130 26.785 3.846 -0.291 -2.659 H8 A1H14 37 A1H14 H19 H6 H 0 1 N N N N N N -1.367 -18.871 25.976 -2.738 -0.944 -2.503 H19 A1H14 38 A1H14 H18 H7 H 0 1 N N N N N N -2.667 -19.764 26.835 -3.452 0.659 -2.803 H18 A1H14 39 A1H14 H21 H8 H 0 1 N N N N N N -2.363 -19.483 23.796 -5.694 -0.242 -2.204 H21 A1H14 40 A1H14 H20 H9 H 0 1 N N N N N N -2.014 -20.955 24.764 -4.977 -1.128 -3.572 H20 A1H14 41 A1H14 H23 H10 H 0 1 N N N N N N -4.252 -20.970 23.620 -5.996 -2.644 -1.836 H23 A1H14 42 A1H14 H22 H11 H 0 1 N N N N N N -4.324 -21.171 25.403 -4.254 -2.932 -2.080 H22 A1H14 43 A1H14 H24 H12 H 0 1 N N N N N N -4.926 -18.987 21.995 -4.629 -1.258 2.311 H24 A1H14 44 A1H14 H1 H13 H 0 1 N N N N N N 4.159 -10.744 28.796 8.091 -0.556 -0.911 H1 A1H14 45 A1H14 H2 H14 H 0 1 N N N N N N 6.561 -11.322 28.893 9.059 -2.504 0.239 H2 A1H14 46 A1H14 H3 H15 H 0 1 N N N N N N 7.554 -12.765 27.167 7.641 -3.926 1.662 H3 A1H14 47 A1H14 H7 H16 H 0 1 N N N N N N 0.856 -15.880 27.759 1.919 1.478 1.528 H7 A1H14 48 A1H14 H9 H17 H 0 1 N N N N N N -1.892 -12.717 26.937 1.419 0.069 -2.489 H9 A1H14 49 A1H14 H11 H19 H 0 1 N N N N N N -2.834 -13.175 30.724 1.456 4.607 1.077 H11 A1H14 50 A1H14 H12 H20 H 0 1 N N N N N N -1.595 -13.839 29.895 1.827 3.057 0.545 H12 A1H14 51 A1H14 H13 H21 H 0 1 N N N N N N -5.835 -16.253 30.322 -3.097 4.808 1.265 H13 A1H14 52 A1H14 H15 H22 H 0 1 N N N N N N -3.119 -17.492 24.864 -4.247 0.733 -0.445 H15 A1H14 53 A1H14 H16 H23 H 0 1 N N N N N N -5.009 -18.956 26.750 -2.656 -1.856 -0.138 H16 A1H14 54 A1H14 H17 H24 H 0 1 N N N N N N -5.436 -17.546 25.722 -3.545 -0.993 1.144 H17 A1H14 55 A1H14 H26 H25 H 0 1 N N N N N N -6.705 -18.139 20.670 -6.106 -2.096 4.022 H26 A1H14 56 A1H14 H25 H26 H 0 1 N N N N N N -7.860 -18.251 22.137 -7.061 -3.053 2.729 H25 A1H14 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H14 C1 C2 DOUB Y N 1 A1H14 C1 C6 SING Y N 2 A1H14 C2 C3 SING Y N 3 A1H14 C3 C4 DOUB Y N 4 A1H14 C4 C5 SING Y N 5 A1H14 C5 C6 DOUB Y N 6 A1H14 C6 O1 SING N N 7 A1H14 O1 C7 SING N N 8 A1H14 C7 C8 DOUB Y N 9 A1H14 C7 C10 SING Y N 10 A1H14 C8 C9 SING Y N 11 A1H14 C9 C12 DOUB Y N 12 A1H14 C10 C11 DOUB Y N 13 A1H14 C11 C12 SING Y N 14 A1H14 C12 C13 SING N N 15 A1H14 C13 N1 DOUB Y N 16 A1H14 C13 C14 SING Y N 17 A1H14 N1 N5 SING Y N 18 A1H14 C14 C15 SING Y N 19 A1H14 C14 C17 DOUB Y N 20 A1H14 C15 N2 SING N N 21 A1H14 C15 N3 DOUB Y N 22 A1H14 N3 C16 SING Y N 23 A1H14 C16 N4 DOUB Y N 24 A1H14 N4 C17 SING Y N 25 A1H14 C17 N5 SING Y N 26 A1H14 N5 C18 SING N N 27 A1H14 C18 C19 SING N N 28 A1H14 C18 C20 SING N N 29 A1H14 C19 N6 SING N N 30 A1H14 C20 C21 SING N N 31 A1H14 C21 C22 SING N N 32 A1H14 C22 N6 SING N N 33 A1H14 N6 C23 SING N N 34 A1H14 C23 O2 DOUB N N 35 A1H14 C23 C24 SING N N 36 A1H14 C24 C25 DOUB N N 37 A1H14 C4 H4 SING N N 38 A1H14 C5 H5 SING N N 39 A1H14 C8 H6 SING N N 40 A1H14 C10 H8 SING N N 41 A1H14 C20 H19 SING N N 42 A1H14 C20 H18 SING N N 43 A1H14 C21 H21 SING N N 44 A1H14 C21 H20 SING N N 45 A1H14 C22 H23 SING N N 46 A1H14 C22 H22 SING N N 47 A1H14 C24 H24 SING N N 48 A1H14 C1 H1 SING N N 49 A1H14 C2 H2 SING N N 50 A1H14 C3 H3 SING N N 51 A1H14 C9 H7 SING N N 52 A1H14 C11 H9 SING N N 53 A1H14 N2 H11 SING N N 54 A1H14 N2 H12 SING N N 55 A1H14 C16 H13 SING N N 56 A1H14 C18 H15 SING N N 57 A1H14 C19 H16 SING N N 58 A1H14 C19 H17 SING N N 59 A1H14 C25 H26 SING N N 60 A1H14 C25 H25 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H14 InChI InChI 1.06 "InChI=1S/C25H24N6O2/c1-2-21(32)30-14-6-7-18(15-30)31-25-22(24(26)27-16-28-25)23(29-31)17-10-12-20(13-11-17)33-19-8-4-3-5-9-19/h2-5,8-13,16,18H,1,6-7,14-15H2,(H2,26,27,28)/t18-/m0/s1" A1H14 InChIKey InChI 1.06 XYFPWWZEPKGCCK-SFHVURJKSA-N A1H14 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)[C@H]5CCCN(C5)C(=O)C=C" A1H14 SMILES CACTVS 3.385 "Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)[CH]5CCCN(C5)C(=O)C=C" A1H14 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=CC(=O)N1CCC[C@@H](C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N" A1H14 SMILES "OpenEye OEToolkits" 2.0.7 "C=CC(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N" # _pdbx_chem_comp_identifier.comp_id A1H14 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(3~{S})-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H14 "Create component" 2024-01-11 PDBE A1H14 "Initial release" 2024-05-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H14 _pdbx_chem_comp_synonyms.name "1-[(3S)-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]prop-2-en-1-one" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #