data_A1H1K # _chem_comp.id A1H1K _chem_comp.name "~{N}-[(2~{S})-1-[[(2~{S})-1-[[(4-chlorophenyl)methyl-(iminomethyl)amino]-methyl-amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]thiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H34 Cl N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H1K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RJY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H1K N1 N1 N 0 1 N N N N N N 6.854 -2.144 20.748 4.777 0.055 0.168 N1 A1H1K 1 A1H1K N3 N2 N 0 1 N N N N N N 9.555 0.572 22.788 0.972 -1.580 0.785 N3 A1H1K 2 A1H1K C4 C1 C 0 1 Y N N N N N 5.193 -0.354 21.219 3.330 0.812 -1.628 C4 A1H1K 3 A1H1K C5 C2 C 0 1 Y N N N N N 4.652 0.007 19.992 2.586 -0.083 -2.375 C5 A1H1K 4 A1H1K C6 C3 C 0 1 Y N N N N N 4.276 1.314 19.729 1.289 0.228 -2.734 C6 A1H1K 5 A1H1K C7 C4 C 0 1 Y N N N N N 4.445 2.264 20.709 0.734 1.435 -2.347 C7 A1H1K 6 A1H1K C8 C5 C 0 1 Y N N N N N 4.967 1.942 21.941 1.479 2.330 -1.600 C8 A1H1K 7 A1H1K C10 C6 C 0 1 N N N N N N 8.080 -0.052 19.952 5.720 -2.229 0.403 C10 A1H1K 8 A1H1K C13 C7 C 0 1 N N N N N N 11.079 -1.350 22.862 2.178 0.012 2.197 C13 A1H1K 9 A1H1K C15 C8 C 0 1 Y N N N N N 12.232 0.397 24.265 -0.193 0.719 2.579 C15 A1H1K 10 A1H1K C17 C9 C 0 1 Y N N N N N 14.347 1.331 23.635 -0.949 2.916 2.000 C17 A1H1K 11 A1H1K C20 C10 C 0 1 N N N N N N 9.966 1.781 22.396 -0.134 -1.019 0.258 C20 A1H1K 12 A1H1K C21 C11 C 0 1 N N S N N N 9.982 2.933 23.420 -1.434 -1.781 0.248 C21 A1H1K 13 A1H1K C22 C12 C 0 1 N N N N N N 8.619 3.672 23.532 -1.453 -2.741 -0.943 C22 A1H1K 14 A1H1K C24 C13 C 0 1 N N N N N N 8.841 5.124 23.957 -0.345 -3.783 -0.776 C24 A1H1K 15 A1H1K C26 C14 C 0 1 N N N N N N 11.872 4.370 23.952 -3.770 -1.183 0.596 C26 A1H1K 16 A1H1K C28 C15 C 0 1 Y N N N N N 13.138 5.747 22.160 -6.165 -0.472 0.911 C28 A1H1K 17 A1H1K O O1 O 0 1 N N N N N N 11.711 4.239 25.167 -3.943 -2.274 1.106 O A1H1K 18 A1H1K C11 C16 C 0 1 N N N N N N 8.756 -1.535 21.886 3.391 -1.730 0.915 C11 A1H1K 19 A1H1K C12 C17 C 0 1 N N S N N N 9.969 -0.629 22.083 2.206 -0.799 0.900 C12 A1H1K 20 A1H1K C14 C18 C 0 1 Y N N N N N 12.244 -0.436 23.154 1.074 1.035 2.126 C14 A1H1K 21 A1H1K C16 C19 C 0 1 Y N N N N N 13.276 1.275 24.500 -1.205 1.658 2.513 C16 A1H1K 22 A1H1K C18 C20 C 0 1 Y N N N N N 14.374 0.503 22.534 0.317 3.230 1.542 C18 A1H1K 23 A1H1K C19 C21 C 0 1 Y N N N N N 13.331 -0.376 22.293 1.329 2.291 1.608 C19 A1H1K 24 A1H1K C2 C22 C 0 1 N N N N N N 6.876 -3.192 19.852 4.987 0.983 1.153 C2 A1H1K 25 A1H1K C23 C23 C 0 1 N N N N N N 7.922 3.662 22.170 -2.810 -3.446 -1.009 C23 A1H1K 26 A1H1K C25 C24 C 0 1 N N N N N N 7.708 2.968 24.554 -1.224 -1.955 -2.235 C25 A1H1K 27 A1H1K C27 C25 C 0 1 Y N N N N N 12.989 5.172 23.418 -4.888 -0.242 0.483 C27 A1H1K 28 A1H1K C29 C26 C 0 1 Y N N N N N 14.368 6.448 22.040 -7.016 0.581 0.675 C29 A1H1K 29 A1H1K C3 C27 C 0 1 N N N N N N 5.629 -1.778 21.475 4.745 0.472 -1.237 C3 A1H1K 30 A1H1K C30 C28 C 0 1 Y N N N N N 15.107 6.394 23.167 -6.458 1.639 0.074 C30 A1H1K 31 A1H1K C9 C29 C 0 1 Y N N N N N 5.340 0.630 22.187 2.779 2.020 -1.246 C9 A1H1K 32 A1H1K N2 N3 N 0 1 N N N N N N 7.946 -1.252 20.823 4.597 -1.293 0.502 N2 A1H1K 33 A1H1K N4 N4 N 0 1 N N N N N N 11.064 3.820 23.036 -2.551 -0.840 0.135 N4 A1H1K 34 A1H1K N5 N5 N 0 1 N N N N N N 6.084 -4.181 19.912 5.153 2.228 0.844 N5 A1H1K 35 A1H1K O1 O2 O 0 1 N N N N N N 10.320 2.028 21.246 -0.084 0.100 -0.207 O1 A1H1K 36 A1H1K O2 O3 O 0 1 N N N N N N 8.538 -2.460 22.649 3.259 -2.873 1.299 O2 A1H1K 37 A1H1K S1 S1 S 0 1 Y N N N N N 14.350 5.503 24.407 -4.800 1.365 -0.225 S1 A1H1K 38 A1H1K CL CL1 CL 0 0 N N N N N N 3.997 3.918 20.380 -0.896 1.827 -2.799 CL A1H1K 39 A1H1K H23 H1 H 0 1 N N N N N N 8.951 0.492 23.581 0.951 -2.501 1.088 H23 A1H1K 40 A1H1K H9 H2 H 0 1 N N N N N N 4.522 -0.746 19.228 3.020 -1.025 -2.678 H9 A1H1K 41 A1H1K H10 H3 H 0 1 N N N N N N 3.857 1.583 18.770 0.708 -0.470 -3.318 H10 A1H1K 42 A1H1K H11 H4 H 0 1 N N N N N N 5.084 2.698 22.703 1.047 3.272 -1.297 H11 A1H1K 43 A1H1K H13 H5 H 0 1 N N N N N N 9.010 0.480 20.200 6.257 -2.254 1.351 H13 A1H1K 44 A1H1K H15 H6 H 0 1 N N N N N N 8.107 -0.365 18.898 5.344 -3.225 0.172 H15 A1H1K 45 A1H1K H14 H7 H 0 1 N N N N N N 7.221 0.616 20.114 6.396 -1.903 -0.388 H14 A1H1K 46 A1H1K H16 H8 H 0 1 N N N N N N 10.666 -1.716 23.814 1.999 -0.657 3.039 H16 A1H1K 47 A1H1K H17 H9 H 0 1 N N N N N N 11.436 -2.203 22.266 3.134 0.517 2.331 H17 A1H1K 48 A1H1K H18 H10 H 0 1 N N N N N N 11.400 0.359 24.952 -0.393 -0.264 2.980 H18 A1H1K 49 A1H1K H20 H11 H 0 1 N N N N N N 15.159 2.019 23.819 -1.740 3.649 1.949 H20 A1H1K 50 A1H1K H1 H12 H 0 1 N N N N N N 10.208 2.502 24.406 -1.530 -2.349 1.174 H1 A1H1K 51 A1H1K H29 H13 H 0 1 N N N N N N 9.342 5.148 24.936 -0.529 -4.368 0.125 H29 A1H1K 52 A1H1K H28 H14 H 0 1 N N N N N N 9.470 5.632 23.211 -0.334 -4.444 -1.643 H28 A1H1K 53 A1H1K H27 H15 H 0 1 N N N N N N 7.871 5.637 24.029 0.618 -3.279 -0.692 H27 A1H1K 54 A1H1K H34 H16 H 0 1 N N N N N N 12.406 5.670 21.369 -6.476 -1.392 1.383 H34 A1H1K 55 A1H1K H H17 H 0 1 N N N N N N 10.363 -0.355 21.093 2.288 -0.121 0.050 H A1H1K 56 A1H1K H19 H18 H 0 1 N N N N N N 13.251 1.920 25.366 -2.196 1.409 2.863 H19 A1H1K 57 A1H1K H21 H19 H 0 1 N N N N N N 15.213 0.540 21.855 0.517 4.213 1.141 H21 A1H1K 58 A1H1K H22 H20 H 0 1 N N N N N N 13.364 -1.021 21.427 2.318 2.537 1.250 H22 A1H1K 59 A1H1K H2 H21 H 0 1 N Y N N N N 7.606 -3.170 19.057 5.015 0.675 2.188 H2 A1H1K 60 A1H1K H25 H22 H 0 1 N N N N N N 6.957 4.185 22.247 -3.599 -2.704 -1.127 H25 A1H1K 61 A1H1K H26 H23 H 0 1 N N N N N N 8.556 4.171 21.430 -2.823 -4.130 -1.857 H26 A1H1K 62 A1H1K H24 H24 H 0 1 N N N N N N 7.751 2.623 21.853 -2.973 -4.006 -0.088 H24 A1H1K 63 A1H1K H31 H25 H 0 1 N N N N N N 8.195 2.966 25.540 -0.257 -1.453 -2.188 H31 A1H1K 64 A1H1K H30 H26 H 0 1 N N N N N N 6.749 3.503 24.620 -1.237 -2.639 -3.084 H30 A1H1K 65 A1H1K H32 H27 H 0 1 N N N N N N 7.529 1.932 24.232 -2.013 -1.213 -2.354 H32 A1H1K 66 A1H1K H35 H28 H 0 1 N N N N N N 14.677 6.967 21.145 -8.059 0.557 0.953 H35 A1H1K 67 A1H1K H8 H29 H 0 1 N N N N N N 4.820 -2.454 21.161 5.379 1.349 -1.370 H8 A1H1K 68 A1H1K H7 H30 H 0 1 N N N N N N 5.811 -1.900 22.553 5.111 -0.340 -1.865 H7 A1H1K 69 A1H1K H36 H31 H 0 1 N N N N N N 16.074 6.864 23.272 -6.984 2.546 -0.183 H36 A1H1K 70 A1H1K H12 H32 H 0 1 N N N N N N 5.753 0.368 23.150 3.362 2.720 -0.666 H12 A1H1K 71 A1H1K H33 H33 H 0 1 N N N N N N 11.210 4.025 22.068 -2.413 0.029 -0.272 H33 A1H1K 72 A1H1K H37 H34 H 0 1 N N N N N N 6.251 -4.840 19.178 5.302 2.885 1.542 H37 A1H1K 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H1K C6 C5 DOUB Y N 1 A1H1K C6 C7 SING Y N 2 A1H1K C2 N5 DOUB N N 3 A1H1K C2 N1 SING N N 4 A1H1K C10 N2 SING N N 5 A1H1K C5 C4 SING Y N 6 A1H1K CL C7 SING N N 7 A1H1K C7 C8 DOUB Y N 8 A1H1K N1 N2 SING N N 9 A1H1K N1 C3 SING N N 10 A1H1K N2 C11 SING N N 11 A1H1K C4 C3 SING N N 12 A1H1K C4 C9 DOUB Y N 13 A1H1K O1 C20 DOUB N N 14 A1H1K C11 C12 SING N N 15 A1H1K C11 O2 DOUB N N 16 A1H1K C8 C9 SING Y N 17 A1H1K C29 C28 SING Y N 18 A1H1K C29 C30 DOUB Y N 19 A1H1K C12 N3 SING N N 20 A1H1K C12 C13 SING N N 21 A1H1K C28 C27 DOUB Y N 22 A1H1K C23 C22 SING N N 23 A1H1K C19 C18 DOUB Y N 24 A1H1K C19 C14 SING Y N 25 A1H1K C20 N3 SING N N 26 A1H1K C20 C21 SING N N 27 A1H1K C18 C17 SING Y N 28 A1H1K C13 C14 SING N N 29 A1H1K N4 C21 SING N N 30 A1H1K N4 C26 SING N N 31 A1H1K C14 C15 DOUB Y N 32 A1H1K C30 S1 SING Y N 33 A1H1K C27 C26 SING N N 34 A1H1K C27 S1 SING Y N 35 A1H1K C21 C22 SING N N 36 A1H1K C22 C24 SING N N 37 A1H1K C22 C25 SING N N 38 A1H1K C17 C16 DOUB Y N 39 A1H1K C26 O DOUB N N 40 A1H1K C15 C16 SING Y N 41 A1H1K N3 H23 SING N N 42 A1H1K C5 H9 SING N N 43 A1H1K C6 H10 SING N N 44 A1H1K C8 H11 SING N N 45 A1H1K C10 H13 SING N N 46 A1H1K C10 H15 SING N N 47 A1H1K C10 H14 SING N N 48 A1H1K C13 H16 SING N N 49 A1H1K C13 H17 SING N N 50 A1H1K C15 H18 SING N N 51 A1H1K C17 H20 SING N N 52 A1H1K C21 H1 SING N N 53 A1H1K C24 H29 SING N N 54 A1H1K C24 H28 SING N N 55 A1H1K C24 H27 SING N N 56 A1H1K C28 H34 SING N N 57 A1H1K C12 H SING N N 58 A1H1K C16 H19 SING N N 59 A1H1K C18 H21 SING N N 60 A1H1K C19 H22 SING N N 61 A1H1K C2 H2 SING N N 62 A1H1K C23 H25 SING N N 63 A1H1K C23 H26 SING N N 64 A1H1K C23 H24 SING N N 65 A1H1K C25 H31 SING N N 66 A1H1K C25 H30 SING N N 67 A1H1K C25 H32 SING N N 68 A1H1K C29 H35 SING N N 69 A1H1K C3 H8 SING N N 70 A1H1K C3 H7 SING N N 71 A1H1K C30 H36 SING N N 72 A1H1K C9 H12 SING N N 73 A1H1K N4 H33 SING N N 74 A1H1K N5 H37 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H1K InChI InChI 1.06 "InChI=1S/C29H34ClN5O3S/c1-29(2,3)25(33-26(36)24-11-8-16-39-24)27(37)32-23(17-20-9-6-5-7-10-20)28(38)34(4)35(19-31)18-21-12-14-22(30)15-13-21/h5-16,19,23,25,31H,17-18H2,1-4H3,(H,32,37)(H,33,36)/b31-19-/t23-,25+/m0/s1" A1H1K InChIKey InChI 1.06 KRDFOVBETAPJMT-JNNRUENRSA-N A1H1K SMILES_CANONICAL CACTVS 3.385 "CN(N(Cc1ccc(Cl)cc1)C=N)C(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](NC(=O)c3sccc3)C(C)(C)C" A1H1K SMILES CACTVS 3.385 "CN(N(Cc1ccc(Cl)cc1)C=N)C(=O)[CH](Cc2ccccc2)NC(=O)[CH](NC(=O)c3sccc3)C(C)(C)C" A1H1K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\N(Cc1ccc(cc1)Cl)N(C)C(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](C(C)(C)C)NC(=O)c3cccs3" A1H1K SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)NC(Cc1ccccc1)C(=O)N(C)N(Cc2ccc(cc2)Cl)C=N)NC(=O)c3cccs3" # _pdbx_chem_comp_identifier.comp_id A1H1K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-1-[[(2~{S})-1-[[(4-chlorophenyl)methyl-(iminomethyl)amino]-methyl-amino]-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]thiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H1K "Create component" 2023-12-22 PDBE A1H1K "Initial release" 2024-05-29 RCSB A1H1K "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H1K _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #