data_A1H1Y # _chem_comp.id A1H1Y _chem_comp.name "(2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-[3,5-bis(chloranyl)phenyl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-~{N}-[(1~{S},2~{S})-2-oxidanylcyclopentyl]-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 Cl2 F3 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-09 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 631.428 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H1Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RMU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H1Y N1 N1 N 0 1 N N N N N N -21.192 10.709 -1.650 -3.174 0.465 0.587 N1 A1H1Y 1 A1H1Y N3 N2 N 0 1 Y N N N N N -13.419 8.202 -2.387 4.300 2.179 0.004 N3 A1H1Y 2 A1H1Y C4 C1 C 0 1 Y N N N N N -13.408 8.638 -1.108 4.625 0.876 -0.072 C4 A1H1Y 3 A1H1Y C5 C2 C 0 1 Y N N N N N -12.160 8.859 -0.364 5.919 0.256 0.310 C5 A1H1Y 4 A1H1Y C6 C3 C 0 1 N N N N N N -19.887 10.609 -1.266 -1.997 -0.160 0.387 C6 A1H1Y 5 A1H1Y C7 C4 C 0 1 Y N N N N N -9.797 9.156 -0.291 7.310 -1.691 0.523 C7 A1H1Y 6 A1H1Y C8 C5 C 0 1 Y N N N N N -10.943 8.995 -1.026 6.104 -1.117 0.166 C8 A1H1Y 7 A1H1Y C10 C6 C 0 1 Y N N N N N -9.819 9.170 1.089 8.334 -0.901 1.024 C10 A1H1Y 8 A1H1Y C15 C7 C 0 1 N N N N N N -23.094 12.384 -1.698 -1.962 2.519 -0.031 C15 A1H1Y 9 A1H1Y C17 C8 C 0 1 N N N N N N -23.855 11.976 0.602 -3.836 3.303 -1.345 C17 A1H1Y 10 A1H1Y C20 C9 C 0 1 Y N N N N N -22.441 8.660 -2.216 -5.561 0.358 0.941 C20 A1H1Y 11 A1H1Y C21 C10 C 0 1 Y N N N N N -22.982 7.829 -3.197 -6.715 -0.384 1.106 C21 A1H1Y 12 A1H1Y C22 C11 C 0 1 Y N N N N N -22.855 8.106 -4.547 -6.657 -1.767 1.097 C22 A1H1Y 13 A1H1Y C24 C12 C 0 1 Y N N N N N -21.628 10.117 -3.961 -4.288 -1.672 0.751 C24 A1H1Y 14 A1H1Y C1 C13 C 0 1 N N N N N N -16.527 11.709 -2.176 1.177 1.590 1.842 C1 A1H1Y 15 A1H1Y OP3 O1 O 0 1 N N N N N N -17.189 10.535 -2.609 0.216 1.660 0.787 OP3 A1H1Y 16 A1H1Y C2 C14 C 0 1 N N R N N N -17.588 9.608 -1.613 0.306 0.588 -0.154 C2 A1H1Y 17 A1H1Y C3 C15 C 0 1 N N S N N N -16.897 8.285 -1.881 1.245 0.986 -1.296 C3 A1H1Y 18 A1H1Y N2 N3 N 0 1 Y N N N N N -15.446 8.396 -1.746 2.595 1.199 -0.769 N2 A1H1Y 19 A1H1Y NAA N4 N 0 1 Y N N N N N -14.662 8.059 -2.781 3.094 2.331 -0.416 NAA A1H1Y 20 A1H1Y F1 F1 F 0 1 N N N N N N -8.609 9.302 -0.932 7.489 -3.023 0.389 F1 A1H1Y 21 A1H1Y CAA C16 C 0 1 Y N N N N N -12.190 8.863 1.029 6.952 1.047 0.808 CAA A1H1Y 22 A1H1Y C9 C17 C 0 1 Y N N N N N -11.016 9.031 1.727 8.155 0.467 1.163 C9 A1H1Y 23 A1H1Y F2 F2 F 0 1 N N N N N N -11.039 9.037 3.086 9.155 1.232 1.652 F2 A1H1Y 24 A1H1Y F3 F3 F 0 1 N N N N N N -8.684 9.349 1.778 9.512 -1.465 1.372 F3 A1H1Y 25 A1H1Y C11 C18 C 0 1 Y N N N N N -14.702 8.748 -0.694 3.527 0.239 -0.571 C11 A1H1Y 26 A1H1Y C12 C19 C 0 1 N N R N N N -19.098 9.392 -1.727 -1.084 0.290 -0.724 C12 A1H1Y 27 A1H1Y C14 C20 C 0 1 N N S N N N -22.062 11.617 -0.869 -3.231 1.928 0.616 C14 A1H1Y 28 A1H1Y C16 C21 C 0 1 N N N N N N -24.072 12.876 -0.629 -2.378 2.803 -1.495 C16 A1H1Y 29 A1H1Y "C5'" C22 C 0 1 N N S N N N -22.922 10.863 0.122 -4.423 2.426 -0.220 "C5'" A1H1Y 30 A1H1Y "O5'" O2 O 0 1 N N N N N N -22.186 10.385 1.176 -5.303 3.202 0.596 "O5'" A1H1Y 31 A1H1Y C19 C23 C 0 1 Y N N N N N -21.755 9.819 -2.621 -4.344 -0.285 0.760 C19 A1H1Y 32 A1H1Y CL1 CL1 CL 0 0 N N N N N N -23.832 6.385 -2.712 -8.239 0.419 1.326 CL1 A1H1Y 33 A1H1Y C23 C24 C 0 1 Y N N N N N -22.176 9.255 -4.901 -5.444 -2.410 0.924 C23 A1H1Y 34 A1H1Y CL2 CL2 CL 0 0 N N N N N N -21.998 9.611 -6.575 -5.376 -4.144 0.914 CL2 A1H1Y 35 A1H1Y O6 O3 O 0 1 N N N N N N -19.380 11.404 -0.482 -1.672 -1.085 1.102 O6 A1H1Y 36 A1H1Y "O2'" O4 O 0 1 N N N N N N -19.550 8.342 -0.858 -0.983 -0.743 -1.706 "O2'" A1H1Y 37 A1H1Y "C2'" C25 C 0 1 N N R N N N -18.936 7.079 -1.117 -0.156 -0.409 -2.822 "C2'" A1H1Y 38 A1H1Y "C3'" C26 C 0 1 N N N N N N -19.537 6.088 -0.150 -0.145 -1.572 -3.816 "C3'" A1H1Y 39 A1H1Y "O3'" O5 O 0 1 N N N N N N -20.897 5.914 -0.404 -1.456 -1.747 -4.358 "O3'" A1H1Y 40 A1H1Y "C1'" C27 C 0 1 N N R N N N -17.436 7.203 -0.944 1.272 -0.139 -2.335 "C1'" A1H1Y 41 A1H1Y "O4'" O6 O 0 1 N N N N N N -17.117 7.512 0.426 1.805 -1.325 -1.742 "O4'" A1H1Y 42 A1H1Y H6 H1 H 0 1 N N N N N N -10.902 8.974 -2.105 5.307 -1.732 -0.223 H6 A1H1Y 43 A1H1Y H12 H2 H 0 1 N N N N N N -22.630 13.227 -2.231 -1.674 3.444 0.470 H12 A1H1Y 44 A1H1Y H11 H3 H 0 1 N N N N N N -23.594 11.723 -2.421 -1.146 1.797 0.001 H11 A1H1Y 45 A1H1Y H15 H4 H 0 1 N N N N N N -23.388 12.545 1.419 -3.851 4.354 -1.058 H15 A1H1Y 46 A1H1Y H16 H5 H 0 1 N N N N N N -24.811 11.556 0.947 -4.388 3.155 -2.274 H16 A1H1Y 47 A1H1Y H19 H6 H 0 1 N N N N N N -22.547 8.419 -1.169 -5.607 1.437 0.947 H19 A1H1Y 48 A1H1Y H20 H7 H 0 1 N N N N N N -23.271 7.448 -5.296 -7.560 -2.345 1.227 H20 A1H1Y 49 A1H1Y H21 H8 H 0 1 N N N N N N -21.109 11.010 -4.276 -3.342 -2.174 0.611 H21 A1H1Y 50 A1H1Y H2 H9 H 0 1 N N N N N N -16.277 12.332 -3.047 1.071 0.641 2.367 H2 A1H1Y 51 A1H1Y H3 H10 H 0 1 N N N N N N -17.186 12.273 -1.499 2.181 1.664 1.424 H3 A1H1Y 52 A1H1Y H1 H11 H 0 1 N N N N N N -15.604 11.434 -1.645 1.012 2.412 2.539 H1 A1H1Y 53 A1H1Y H4 H12 H 0 1 N N N N N N -17.337 9.967 -0.604 0.693 -0.301 0.344 H4 A1H1Y 54 A1H1Y H5 H13 H 0 1 N N N N N N -17.132 7.983 -2.912 0.885 1.904 -1.760 H5 A1H1Y 55 A1H1Y H7 H14 H 0 1 N N N N N N -13.124 8.736 1.555 6.813 2.113 0.916 H7 A1H1Y 56 A1H1Y H8 H15 H 0 1 N N N N N N -15.052 9.055 0.280 3.423 -0.818 -0.769 H8 A1H1Y 57 A1H1Y H9 H16 H 0 1 N N N N N N -19.354 9.166 -2.773 -1.488 1.191 -1.184 H9 A1H1Y 58 A1H1Y H10 H17 H 0 1 N N N N N N -21.439 12.341 -0.323 -3.323 2.277 1.645 H10 A1H1Y 59 A1H1Y H13 H18 H 0 1 N N N N N N -23.863 13.926 -0.375 -1.748 3.576 -1.934 H13 A1H1Y 60 A1H1Y H14 H19 H 0 1 N N N N N N -25.107 12.785 -0.989 -2.342 1.890 -2.091 H14 A1H1Y 61 A1H1Y H17 H20 H 0 1 N N N N N N -23.497 10.076 -0.387 -4.959 1.579 -0.647 H17 A1H1Y 62 A1H1Y H18 H21 H 0 1 N N N N N N -22.757 9.919 1.776 -6.118 3.472 0.150 H18 A1H1Y 63 A1H1Y H22 H22 H 0 1 N N N N N N -19.153 6.755 -2.146 -0.548 0.484 -3.310 H22 A1H1Y 64 A1H1Y H23 H23 H 0 1 N N N N N N -19.023 5.121 -0.258 0.555 -1.354 -4.622 H23 A1H1Y 65 A1H1Y H24 H24 H 0 1 N N N N N N -19.406 6.461 0.877 0.162 -2.484 -3.305 H24 A1H1Y 66 A1H1Y H25 H25 H 0 1 N N N N N N -21.257 5.288 0.213 -1.524 -2.470 -4.997 H25 A1H1Y 67 A1H1Y H26 H26 H 0 1 N N N N N N -16.973 6.244 -1.221 1.895 0.159 -3.179 H26 A1H1Y 68 A1H1Y H27 H27 H 0 1 N N N N N N -17.459 6.830 0.993 1.852 -2.080 -2.345 H27 A1H1Y 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H1Y CL2 C23 SING N N 1 A1H1Y C23 C22 DOUB Y N 2 A1H1Y C23 C24 SING Y N 3 A1H1Y C22 C21 SING Y N 4 A1H1Y C24 C19 DOUB Y N 5 A1H1Y C21 CL1 SING N N 6 A1H1Y C21 C20 DOUB Y N 7 A1H1Y NAA N3 DOUB Y N 8 A1H1Y NAA N2 SING Y N 9 A1H1Y C19 C20 SING Y N 10 A1H1Y C19 N1 SING N N 11 A1H1Y OP3 C1 SING N N 12 A1H1Y OP3 C2 SING N N 13 A1H1Y N3 C4 SING Y N 14 A1H1Y C3 N2 SING N N 15 A1H1Y C3 C2 SING N N 16 A1H1Y C3 "C1'" SING N N 17 A1H1Y N2 C11 SING Y N 18 A1H1Y C12 C2 SING N N 19 A1H1Y C12 C6 SING N N 20 A1H1Y C12 "O2'" SING N N 21 A1H1Y C15 C14 SING N N 22 A1H1Y C15 C16 SING N N 23 A1H1Y N1 C6 SING N N 24 A1H1Y N1 C14 SING N N 25 A1H1Y C6 O6 DOUB N N 26 A1H1Y "C2'" "C1'" SING N N 27 A1H1Y "C2'" "O2'" SING N N 28 A1H1Y "C2'" "C3'" SING N N 29 A1H1Y C4 C11 DOUB Y N 30 A1H1Y C4 C5 SING N N 31 A1H1Y C8 C5 DOUB Y N 32 A1H1Y C8 C7 SING Y N 33 A1H1Y "C1'" "O4'" SING N N 34 A1H1Y F1 C7 SING N N 35 A1H1Y C14 "C5'" SING N N 36 A1H1Y C16 C17 SING N N 37 A1H1Y "O3'" "C3'" SING N N 38 A1H1Y C5 CAA SING Y N 39 A1H1Y C7 C10 DOUB Y N 40 A1H1Y "C5'" C17 SING N N 41 A1H1Y "C5'" "O5'" SING N N 42 A1H1Y CAA C9 DOUB Y N 43 A1H1Y C10 C9 SING Y N 44 A1H1Y C10 F3 SING N N 45 A1H1Y C9 F2 SING N N 46 A1H1Y C8 H6 SING N N 47 A1H1Y C15 H12 SING N N 48 A1H1Y C15 H11 SING N N 49 A1H1Y C17 H15 SING N N 50 A1H1Y C17 H16 SING N N 51 A1H1Y C20 H19 SING N N 52 A1H1Y C22 H20 SING N N 53 A1H1Y C24 H21 SING N N 54 A1H1Y C1 H2 SING N N 55 A1H1Y C1 H3 SING N N 56 A1H1Y C1 H1 SING N N 57 A1H1Y C2 H4 SING N N 58 A1H1Y C3 H5 SING N N 59 A1H1Y CAA H7 SING N N 60 A1H1Y C11 H8 SING N N 61 A1H1Y C12 H9 SING N N 62 A1H1Y C14 H10 SING N N 63 A1H1Y C16 H13 SING N N 64 A1H1Y C16 H14 SING N N 65 A1H1Y "C5'" H17 SING N N 66 A1H1Y "O5'" H18 SING N N 67 A1H1Y "C2'" H22 SING N N 68 A1H1Y "C3'" H23 SING N N 69 A1H1Y "C3'" H24 SING N N 70 A1H1Y "O3'" H25 SING N N 71 A1H1Y "C1'" H26 SING N N 72 A1H1Y "O4'" H27 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H1Y InChI InChI 1.06 "InChI=1S/C27H27Cl2F3N4O6/c1-41-25-23(35-10-18(33-34-35)12-5-16(30)22(32)17(31)6-12)24(39)21(11-37)42-26(25)27(40)36(19-3-2-4-20(19)38)15-8-13(28)7-14(29)9-15/h5-10,19-21,23-26,37-39H,2-4,11H2,1H3/t19-,20-,21+,23-,24-,25+,26+/m0/s1" A1H1Y InChIKey InChI 1.06 BITRQRCAMVUADK-VLPMDROOSA-N A1H1Y SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@@H](O[C@H](CO)[C@H](O)[C@@H]1n2cc(nn2)c3cc(F)c(F)c(F)c3)C(=O)N([C@H]4CCC[C@@H]4O)c5cc(Cl)cc(Cl)c5" A1H1Y SMILES CACTVS 3.385 "CO[CH]1[CH](O[CH](CO)[CH](O)[CH]1n2cc(nn2)c3cc(F)c(F)c(F)c3)C(=O)N([CH]4CCC[CH]4O)c5cc(Cl)cc(Cl)c5" A1H1Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@H]([C@H]([C@H](O[C@H]1C(=O)N(c2cc(cc(c2)Cl)Cl)[C@H]3CCC[C@@H]3O)CO)O)n4cc(nn4)c5cc(c(c(c5)F)F)F" A1H1Y SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(OC1C(=O)N(c2cc(cc(c2)Cl)Cl)C3CCCC3O)CO)O)n4cc(nn4)c5cc(c(c(c5)F)F)F" # _pdbx_chem_comp_identifier.comp_id A1H1Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R},6~{R})-~{N}-[3,5-bis(chloranyl)phenyl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-~{N}-[(1~{S},2~{S})-2-oxidanylcyclopentyl]-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H1Y "Create component" 2024-01-09 PDBE A1H1Y "Initial release" 2025-01-29 RCSB #