data_A1H28 # _chem_comp.id A1H28 _chem_comp.name "5-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]-2-chloranyl-benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 Cl N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-01 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 437.857 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RV8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H28 C11 C1 C 0 1 N N R N N N 53.763 -65.892 -28.604 2.811 0.776 0.463 C11 A1H28 1 A1H28 C12 C2 C 0 1 N N R N N N 54.240 -67.099 -29.395 2.873 2.031 -0.435 C12 A1H28 2 A1H28 C14 C3 C 0 1 N N S N N N 55.655 -67.315 -28.866 1.429 2.580 -0.413 C14 A1H28 3 A1H28 C17 C4 C 0 1 N N S N N N 56.031 -66.001 -28.197 0.665 1.591 0.495 C17 A1H28 4 A1H28 C18 C5 C 0 1 N N N N N N 57.311 -65.395 -28.751 -0.754 1.369 -0.034 C18 A1H28 5 A1H28 C2 C6 C 0 1 Y N N N N N 49.667 -64.833 -27.321 7.140 -0.272 1.017 C2 A1H28 6 A1H28 C20 C7 C 0 1 Y N N N N N 58.097 -66.059 -31.345 -3.256 0.180 0.363 C20 A1H28 7 A1H28 C21 C8 C 0 1 Y N N N N N 57.729 -67.365 -31.637 -3.501 0.814 -0.851 C21 A1H28 8 A1H28 C22 C9 C 0 1 Y N N N N N 58.587 -68.184 -32.356 -4.739 0.705 -1.454 C22 A1H28 9 A1H28 C23 C10 C 0 1 Y N N N N N 59.814 -67.691 -32.782 -5.743 -0.033 -0.857 C23 A1H28 10 A1H28 C24 C11 C 0 1 Y N N N N N 60.182 -66.382 -32.489 -5.506 -0.674 0.363 C24 A1H28 11 A1H28 C25 C12 C 0 1 Y N N N N N 59.323 -65.564 -31.761 -4.253 -0.568 0.969 C25 A1H28 12 A1H28 C26 C13 C 0 1 N N N N N N 61.501 -65.819 -32.933 -6.576 -1.464 1.005 C26 A1H28 13 A1H28 C4 C14 C 0 1 Y N N N N N 49.444 -63.770 -29.394 6.733 -2.017 -0.438 C4 A1H28 14 A1H28 C6 C15 C 0 1 Y N N N N N 50.757 -64.147 -29.696 5.396 -1.597 -0.534 C6 A1H28 15 A1H28 C7 C16 C 0 1 Y N N N N N 51.484 -64.887 -28.773 5.001 -0.465 0.199 C7 A1H28 16 A1H28 C9 C17 C 0 1 Y N N N N N 52.753 -64.569 -30.514 3.290 -1.268 -0.936 C9 A1H28 17 A1H28 N1 N1 N 0 1 Y N N N N N 50.930 -65.218 -27.583 5.898 0.161 0.953 N1 A1H28 18 A1H28 N10 N2 N 0 1 Y N N N N N 52.696 -65.130 -29.296 3.669 -0.282 -0.075 N10 A1H28 19 A1H28 N3 N3 N 0 1 Y N N N N N 48.930 -64.130 -28.195 7.558 -1.327 0.343 N3 A1H28 20 A1H28 N5 N4 N 0 1 N N N N N N 48.678 -63.046 -30.259 7.180 -3.122 -1.140 N5 A1H28 21 A1H28 N8 N5 N 0 1 Y N N N N N 51.570 -63.965 -30.768 4.305 -2.036 -1.207 N8 A1H28 22 A1H28 O13 O1 O 0 1 N N N N N N 53.373 -68.236 -29.215 3.781 2.991 0.109 O13 A1H28 23 A1H28 O15 O2 O 0 1 N N N N N N 55.718 -68.357 -27.887 1.401 3.896 0.144 O15 A1H28 24 A1H28 O16 O3 O 0 1 N N N N N N 54.939 -65.101 -28.419 1.426 0.366 0.429 O16 A1H28 25 A1H28 O28 O4 O 0 1 N N N N N N 62.344 -65.516 -32.057 -6.345 -2.081 2.180 O28 A1H28 26 A1H28 O29 O5 O 0 1 N N N N N N 61.714 -65.654 -34.157 -7.664 -1.558 0.473 O29 A1H28 27 A1H28 S19 S1 S 0 1 N N N N N N 57.047 -65.075 -30.460 -1.675 0.323 1.128 S19 A1H28 28 A1H28 CL1 CL1 CL 0 0 N N N N N N 60.894 -68.785 -33.712 -7.298 -0.160 -1.617 CL1 A1H28 29 A1H28 H1 H1 H 0 1 N N N N N N 53.386 -66.236 -27.629 3.108 1.023 1.482 H1 A1H28 30 A1H28 H2 H2 H 0 1 N N N N N N 54.295 -66.830 -30.460 3.166 1.761 -1.449 H2 A1H28 31 A1H28 H3 H3 H 0 1 N N N N N N 56.339 -67.516 -29.704 1.005 2.581 -1.418 H3 A1H28 32 A1H28 H4 H4 H 0 1 N N N N N N 56.160 -66.177 -27.119 0.633 1.964 1.519 H4 A1H28 33 A1H28 H5 H5 H 0 1 N N N N N N 58.146 -66.100 -28.625 -1.258 2.330 -0.136 H5 A1H28 34 A1H28 H6 H6 H 0 1 N N N N N N 57.541 -64.457 -28.224 -0.706 0.878 -1.006 H6 A1H28 35 A1H28 H7 H7 H 0 1 N N N N N N 49.230 -65.100 -26.370 7.844 0.260 1.640 H7 A1H28 36 A1H28 H8 H8 H 0 1 N N N N N N 56.774 -67.744 -31.304 -2.722 1.393 -1.323 H8 A1H28 37 A1H28 H9 H9 H 0 1 N N N N N N 58.302 -69.201 -32.584 -4.924 1.200 -2.397 H9 A1H28 38 A1H28 H10 H10 H 0 1 N N N N N N 59.610 -64.551 -31.522 -4.064 -1.061 1.911 H10 A1H28 39 A1H28 H11 H11 H 0 1 N N N N N N 53.602 -64.596 -31.180 2.295 -1.392 -1.337 H11 A1H28 40 A1H28 H12 H12 H 0 1 N N N N N N 47.782 -62.875 -29.849 8.106 -3.402 -1.065 H12 A1H28 41 A1H28 H13 H13 H 0 1 N N N N N N 49.128 -62.174 -30.453 6.568 -3.617 -1.706 H13 A1H28 42 A1H28 H14 H14 H 0 1 N N N N N N 52.512 -68.037 -29.564 3.815 3.823 -0.383 H14 A1H28 43 A1H28 H15 H15 H 0 1 N N N N N N 56.614 -68.456 -27.587 1.916 4.545 -0.354 H15 A1H28 44 A1H28 H16 H16 H 0 1 N N N N N N 63.121 -65.162 -32.474 -7.076 -2.586 2.561 H16 A1H28 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H28 O29 C26 DOUB N N 1 A1H28 CL1 C23 SING N N 2 A1H28 C26 C24 SING N N 3 A1H28 C26 O28 SING N N 4 A1H28 C23 C24 DOUB Y N 5 A1H28 C23 C22 SING Y N 6 A1H28 C24 C25 SING Y N 7 A1H28 C22 C21 DOUB Y N 8 A1H28 C25 C20 DOUB Y N 9 A1H28 C21 C20 SING Y N 10 A1H28 C20 S19 SING N N 11 A1H28 N8 C9 DOUB Y N 12 A1H28 N8 C6 SING Y N 13 A1H28 C9 N10 SING Y N 14 A1H28 S19 C18 SING N N 15 A1H28 N5 C4 SING N N 16 A1H28 C6 C4 DOUB Y N 17 A1H28 C6 C7 SING Y N 18 A1H28 C12 O13 SING N N 19 A1H28 C12 C14 SING N N 20 A1H28 C12 C11 SING N N 21 A1H28 C4 N3 SING Y N 22 A1H28 N10 C7 SING Y N 23 A1H28 N10 C11 SING N N 24 A1H28 C14 C17 SING N N 25 A1H28 C14 O15 SING N N 26 A1H28 C7 N1 DOUB Y N 27 A1H28 C18 C17 SING N N 28 A1H28 C11 O16 SING N N 29 A1H28 O16 C17 SING N N 30 A1H28 N3 C2 DOUB Y N 31 A1H28 N1 C2 SING Y N 32 A1H28 C11 H1 SING N N 33 A1H28 C12 H2 SING N N 34 A1H28 C14 H3 SING N N 35 A1H28 C17 H4 SING N N 36 A1H28 C18 H5 SING N N 37 A1H28 C18 H6 SING N N 38 A1H28 C2 H7 SING N N 39 A1H28 C21 H8 SING N N 40 A1H28 C22 H9 SING N N 41 A1H28 C25 H10 SING N N 42 A1H28 C9 H11 SING N N 43 A1H28 N5 H12 SING N N 44 A1H28 N5 H13 SING N N 45 A1H28 O13 H14 SING N N 46 A1H28 O15 H15 SING N N 47 A1H28 O28 H16 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H28 InChI InChI 1.06 "InChI=1S/C17H16ClN5O5S/c18-9-2-1-7(3-8(9)17(26)27)29-4-10-12(24)13(25)16(28-10)23-6-22-11-14(19)20-5-21-15(11)23/h1-3,5-6,10,12-13,16,24-25H,4H2,(H,26,27)(H2,19,20,21)/t10-,12-,13-,16-/m1/s1" A1H28 InChIKey InChI 1.06 GDDRINPKJGQIPH-XNIJJKJLSA-N A1H28 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSc4ccc(Cl)c(c4)C(O)=O)[C@@H](O)[C@H]3O" A1H28 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSc4ccc(Cl)c(c4)C(O)=O)[CH](O)[CH]3O" A1H28 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1SC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)C(=O)O)Cl" A1H28 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1SCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)C(=O)O)Cl" # _pdbx_chem_comp_identifier.comp_id A1H28 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]-2-chloranyl-benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H28 "Create component" 2024-02-01 PDBE A1H28 "Initial release" 2024-02-14 RCSB #