data_A1H2K
#
_chem_comp.id A1H2K
_chem_comp.name "7.10 monoacylglycerol (S-form)"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H38 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "[(2S)-2,3-bis(oxidanyl)propyl] (E)-heptadec-7-enoate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-01-19
_chem_comp.pdbx_modified_date 2024-03-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 342.513
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H2K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8RQP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H2K O1 O1 O 0 1 N N N N N N 4.934 -1.872 -1.170 11.045 1.936 0.099 O1 A1H2K 1
A1H2K C1 C1 C 0 1 N N N N N N 6.178 -1.303 -1.565 9.692 2.100 0.530 C1 A1H2K 2
A1H2K C2 C2 C 0 1 N N S N N N 6.389 0.063 -0.954 8.811 1.048 -0.147 C2 A1H2K 3
A1H2K O2 O2 O 0 1 N N N N N N 7.541 0.678 -1.520 8.789 1.279 -1.556 O2 A1H2K 4
A1H2K C3 C3 C 0 1 N N N N N N 6.550 0.005 0.550 7.387 1.142 0.407 C3 A1H2K 5
A1H2K O3 O3 O 0 1 N N N N N N 5.255 -0.235 1.153 6.580 0.070 -0.146 O3 A1H2K 6
A1H2K C4 C4 C 0 1 N N N N N N 5.202 -0.323 2.496 5.297 0.010 0.242 C4 A1H2K 7
A1H2K O4 O4 O 0 1 N N N N N N 6.161 -0.220 3.225 4.862 0.828 1.019 O4 A1H2K 8
A1H2K C5 C5 C 0 1 N N N N N N 3.799 -0.563 2.972 4.398 -1.076 -0.290 C5 A1H2K 9
A1H2K C6 C6 C 0 1 N N N N N N 2.999 0.710 3.185 2.998 -0.917 0.306 C6 A1H2K 10
A1H2K C7 C7 C 0 1 N N N N N N 2.532 1.346 1.884 2.085 -2.020 -0.235 C7 A1H2K 11
A1H2K C8 C8 C 0 1 N N N N N N 1.590 2.532 2.063 0.685 -1.861 0.361 C8 A1H2K 12
A1H2K C9 C9 C 0 1 N N N N N N 1.235 3.266 0.766 -0.228 -2.963 -0.180 C9 A1H2K 13
A1H2K C10 C10 C 0 1 N N N N N N 0.422 2.443 -0.190 -1.607 -2.807 0.407 C10 A1H2K 14
A1H2K C11 C11 C 0 1 N N N N N N -0.836 2.664 -0.533 -2.648 -2.712 -0.383 C11 A1H2K 15
A1H2K C12 C12 C 0 1 N N N N N N -1.648 1.811 -1.464 -4.027 -2.556 0.204 C12 A1H2K 16
A1H2K C13 C13 C 0 1 N N N N N N -1.780 0.348 -1.022 -4.692 -1.308 -0.382 C13 A1H2K 17
A1H2K C14 C14 C 0 1 N N N N N N -2.419 0.119 0.345 -6.092 -1.150 0.214 C14 A1H2K 18
A1H2K C15 C15 C 0 1 N N N N N N -3.821 0.689 0.532 -6.757 0.098 -0.372 C15 A1H2K 19
A1H2K C16 C16 C 0 1 N N N N N N -4.883 0.168 -0.429 -8.157 0.257 0.224 C16 A1H2K 20
A1H2K C17 C17 C 0 1 N N N N N N -5.137 -1.332 -0.351 -8.822 1.504 -0.362 C17 A1H2K 21
A1H2K C18 C18 C 0 1 N N N N N N -6.316 -1.817 -1.184 -10.222 1.663 0.234 C18 A1H2K 22
A1H2K C19 C19 C 0 1 N N N N N N -6.562 -3.316 -1.119 -10.887 2.910 -0.352 C19 A1H2K 23
A1H2K C20 C20 C 0 1 N N N N N N -7.668 -3.797 -2.033 -12.288 3.069 0.244 C20 A1H2K 24
A1H2K H1 H1 H 0 1 N N N N N N 4.835 -2.727 -1.571 11.661 2.571 0.489 H1 A1H2K 25
A1H2K H2 H2 H 0 1 N N N N N N 6.992 -1.968 -1.241 9.638 1.978 1.612 H2 A1H2K 26
A1H2K H3 H3 H 0 1 N N N N N N 6.195 -1.209 -2.661 9.342 3.096 0.258 H3 A1H2K 27
A1H2K H4 H4 H 0 1 N N N N N N 5.504 0.677 -1.178 9.212 0.054 0.052 H4 A1H2K 28
A1H2K H5 H5 H 0 1 N N N N N N 7.666 1.535 -1.131 8.442 2.147 -1.807 H5 A1H2K 29
A1H2K H6 H6 H 0 1 N N N N N N 7.238 -0.811 0.816 7.414 1.054 1.493 H6 A1H2K 30
A1H2K H7 H7 H 0 1 N N N N N N 6.956 0.960 0.915 6.953 2.103 0.131 H7 A1H2K 31
A1H2K H8 H8 H 0 1 N N N N N N 3.279 -1.178 2.223 4.341 -1.001 -1.376 H8 A1H2K 32
A1H2K H9 H9 H 0 1 N N N N N N 3.845 -1.108 3.926 4.802 -2.050 -0.014 H9 A1H2K 33
A1H2K H10 H10 H 0 1 N N N N N N 2.115 0.470 3.795 3.054 -0.992 1.391 H10 A1H2K 34
A1H2K H11 H11 H 0 1 N N N N N N 3.629 1.434 3.722 2.594 0.057 0.029 H11 A1H2K 35
A1H2K H12 H12 H 0 1 N N N N N N 3.419 1.692 1.333 2.029 -1.944 -1.321 H12 A1H2K 36
A1H2K H13 H13 H 0 1 N N N N N N 2.010 0.578 1.294 2.489 -2.993 0.041 H13 A1H2K 37
A1H2K H14 H14 H 0 1 N N N N N N 0.657 2.164 2.515 0.742 -1.936 1.446 H14 A1H2K 38
A1H2K H15 H15 H 0 1 N N N N N N 2.069 3.251 2.744 0.281 -0.887 0.084 H15 A1H2K 39
A1H2K H16 H16 H 0 1 N N N N N N 0.660 4.168 1.024 -0.284 -2.888 -1.266 H16 A1H2K 40
A1H2K H17 H17 H 0 1 N N N N N N 2.170 3.558 0.265 0.176 -3.937 0.096 H17 A1H2K 41
A1H2K H18 H18 H 0 1 N N N N N N 0.910 1.591 -0.640 -1.737 -2.772 1.478 H18 A1H2K 42
A1H2K H19 H19 H 0 1 N N N N N N -1.320 3.531 -0.108 -2.517 -2.746 -1.455 H19 A1H2K 43
A1H2K H20 H20 H 0 1 N N N N N N -2.657 2.242 -1.535 -4.626 -3.434 -0.037 H20 A1H2K 44
A1H2K H21 H21 H 0 1 N N N N N N -1.170 1.830 -2.455 -3.952 -2.453 1.286 H21 A1H2K 45
A1H2K H22 H22 H 0 1 N N N N N N -2.391 -0.177 -1.772 -4.093 -0.430 -0.141 H22 A1H2K 46
A1H2K H23 H23 H 0 1 N N N N N N -0.771 -0.090 -1.000 -4.767 -1.411 -1.464 H23 A1H2K 47
A1H2K H24 H24 H 0 1 N N N N N N -2.472 -0.967 0.514 -6.691 -2.028 -0.027 H24 A1H2K 48
A1H2K H25 H25 H 0 1 N N N N N N -1.766 0.577 1.103 -6.017 -1.046 1.296 H25 A1H2K 49
A1H2K H26 H26 H 0 1 N N N N N N -4.147 0.453 1.556 -6.158 0.976 -0.131 H26 A1H2K 50
A1H2K H27 H27 H 0 1 N N N N N N -3.761 1.780 0.409 -6.832 -0.005 -1.455 H27 A1H2K 51
A1H2K H28 H28 H 0 1 N N N N N N -5.828 0.687 -0.208 -8.756 -0.622 -0.017 H28 A1H2K 52
A1H2K H29 H29 H 0 1 N N N N N N -4.564 0.408 -1.454 -8.082 0.360 1.306 H29 A1H2K 53
A1H2K H30 H30 H 0 1 N N N N N N -4.233 -1.852 -0.700 -8.223 2.382 -0.122 H30 A1H2K 54
A1H2K H31 H31 H 0 1 N N N N N N -5.328 -1.594 0.700 -8.898 1.401 -1.445 H31 A1H2K 55
A1H2K H32 H32 H 0 1 N N N N N N -7.222 -1.305 -0.828 -10.822 0.785 -0.007 H32 A1H2K 56
A1H2K H33 H33 H 0 1 N N N N N N -6.130 -1.545 -2.233 -10.147 1.766 1.316 H33 A1H2K 57
A1H2K H34 H34 H 0 1 N N N N N N -5.632 -3.832 -1.400 -10.288 3.788 -0.112 H34 A1H2K 58
A1H2K H35 H35 H 0 1 N N N N N N -6.829 -3.578 -0.085 -10.963 2.807 -1.435 H35 A1H2K 59
A1H2K H36 H36 H 0 1 N N N N N N -7.783 -4.886 -1.928 -12.887 2.191 0.003 H36 A1H2K 60
A1H2K H37 H37 H 0 1 N N N N N N -8.611 -3.301 -1.760 -12.212 3.172 1.326 H37 A1H2K 61
A1H2K H38 H38 H 0 1 N N N N N N -7.414 -3.554 -3.075 -12.762 3.957 -0.174 H38 A1H2K 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H2K O1 C1 SING N N 1
A1H2K C1 C2 SING N N 2
A1H2K C2 O2 SING N N 3
A1H2K C2 C3 SING N N 4
A1H2K C3 O3 SING N N 5
A1H2K O3 C4 SING N N 6
A1H2K C4 O4 DOUB N N 7
A1H2K C4 C5 SING N N 8
A1H2K C5 C6 SING N N 9
A1H2K C6 C7 SING N N 10
A1H2K C7 C8 SING N N 11
A1H2K C8 C9 SING N N 12
A1H2K C9 C10 SING N N 13
A1H2K C10 C11 DOUB N E 14
A1H2K C11 C12 SING N N 15
A1H2K C12 C13 SING N N 16
A1H2K C13 C14 SING N N 17
A1H2K C14 C15 SING N N 18
A1H2K C15 C16 SING N N 19
A1H2K C16 C17 SING N N 20
A1H2K C17 C18 SING N N 21
A1H2K C18 C19 SING N N 22
A1H2K C19 C20 SING N N 23
A1H2K O1 H1 SING N N 24
A1H2K C1 H2 SING N N 25
A1H2K C1 H3 SING N N 26
A1H2K C2 H4 SING N N 27
A1H2K O2 H5 SING N N 28
A1H2K C3 H6 SING N N 29
A1H2K C3 H7 SING N N 30
A1H2K C5 H8 SING N N 31
A1H2K C5 H9 SING N N 32
A1H2K C6 H10 SING N N 33
A1H2K C6 H11 SING N N 34
A1H2K C7 H12 SING N N 35
A1H2K C7 H13 SING N N 36
A1H2K C8 H14 SING N N 37
A1H2K C8 H15 SING N N 38
A1H2K C9 H16 SING N N 39
A1H2K C9 H17 SING N N 40
A1H2K C10 H18 SING N N 41
A1H2K C11 H19 SING N N 42
A1H2K C12 H20 SING N N 43
A1H2K C12 H21 SING N N 44
A1H2K C13 H22 SING N N 45
A1H2K C13 H23 SING N N 46
A1H2K C14 H24 SING N N 47
A1H2K C14 H25 SING N N 48
A1H2K C15 H26 SING N N 49
A1H2K C15 H27 SING N N 50
A1H2K C16 H28 SING N N 51
A1H2K C16 H29 SING N N 52
A1H2K C17 H30 SING N N 53
A1H2K C17 H31 SING N N 54
A1H2K C18 H32 SING N N 55
A1H2K C18 H33 SING N N 56
A1H2K C19 H34 SING N N 57
A1H2K C19 H35 SING N N 58
A1H2K C20 H36 SING N N 59
A1H2K C20 H37 SING N N 60
A1H2K C20 H38 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H2K InChI InChI 1.06 "InChI=1S/C20H38O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-20(23)24-18-19(22)17-21/h10-11,19,21-22H,2-9,12-18H2,1H3/b11-10+/t19-/m0/s1"
A1H2K InChIKey InChI 1.06 XTALOCBNHVPVKU-VYENPZKTSA-N
A1H2K SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCC/C=C/CCCCCC(=O)OC[C@@H](O)CO"
A1H2K SMILES CACTVS 3.385 "CCCCCCCCCC=CCCCCCC(=O)OC[CH](O)CO"
A1H2K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC/C=C/CCCCCC(=O)OC[C@H](CO)O"
A1H2K SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC=CCCCCCC(=O)OCC(CO)O"
#
_pdbx_chem_comp_identifier.comp_id A1H2K
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{S})-2,3-bis(oxidanyl)propyl] (~{E})-heptadec-7-enoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H2K "Create component" 2024-01-19 PDBE
A1H2K "Modify name" 2024-03-11 PDBE
A1H2K "Initial release" 2024-04-03 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id A1H2K
_pdbx_chem_comp_synonyms.name "[(2S)-2,3-bis(oxidanyl)propyl] (E)-heptadec-7-enoate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#