data_A1H2P # _chem_comp.id A1H2P _chem_comp.name "~{N}-~{tert}-butyl-4-[4-[[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]methyl]-1,2,3-triazol-1-yl]piperidine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H37 F3 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-22 _chem_comp.pdbx_modified_date 2025-01-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 622.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RRB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H2P N1 N1 N 0 1 N N N N N N -28.326 7.831 0.654 -9.119 -1.402 -0.885 N1 A1H2P 1 A1H2P N3 N2 N 0 1 Y N N N N N -23.591 8.444 -3.582 -4.047 1.741 0.338 N3 A1H2P 2 A1H2P C4 C1 C 0 1 N N N N N N -24.968 8.143 -3.158 -5.506 1.624 0.383 C4 A1H2P 3 A1H2P C6 C2 C 0 1 N N N N N N -27.736 6.844 -0.180 -8.751 -0.894 0.308 C6 A1H2P 4 A1H2P C7 C3 C 0 1 N N N N N N -25.049 6.714 -2.670 -6.005 0.964 -0.905 C7 A1H2P 5 A1H2P C8 C4 C 0 1 N N N N N N -26.831 8.716 -1.625 -7.440 0.678 1.651 C8 A1H2P 6 A1H2P C17 C5 C 0 1 Y N N N N N -12.765 8.759 -0.421 7.073 -0.974 0.289 C17 A1H2P 7 A1H2P C20 C6 C 0 1 Y N N N N N -12.827 8.820 0.963 7.903 -1.922 0.883 C20 A1H2P 8 A1H2P C21 C7 C 0 1 Y N N N N N -11.665 9.022 1.677 9.211 -2.057 0.457 C21 A1H2P 9 A1H2P C22 C8 C 0 1 Y N N N N N -10.453 9.152 1.034 9.697 -1.251 -0.561 C22 A1H2P 10 A1H2P C24 C9 C 0 1 N N N N N N -17.756 11.863 -2.368 1.070 -2.363 -1.037 C24 A1H2P 11 A1H2P C26 C10 C 0 1 N N N N N N -20.210 6.119 -0.371 1.546 4.149 -0.256 C26 A1H2P 12 A1H2P C28 C11 C 0 1 Y N N N N N -22.527 8.633 -2.826 -3.163 0.780 0.694 C28 A1H2P 13 A1H2P C1 C12 C 0 1 N N N N N N -30.495 6.854 1.134 -11.233 -2.424 -0.202 C1 A1H2P 14 A1H2P C2 C13 C 0 1 N N N N N N -29.252 7.523 1.738 -9.912 -2.632 -0.945 C2 A1H2P 15 A1H2P C3 C14 C 0 1 N N N N N N -29.623 8.861 2.396 -10.198 -2.985 -2.406 C3 A1H2P 16 A1H2P CAB C15 C 0 1 N N N N N N -28.578 6.597 2.755 -9.132 -3.773 -0.288 CAB A1H2P 17 A1H2P NAA N3 N 0 1 N N N N N N -26.870 7.306 -1.201 -7.938 0.180 0.361 NAA A1H2P 18 A1H2P CAA C16 C 0 1 N N N N N N -26.468 6.392 -2.271 -7.534 0.875 -0.868 CAA A1H2P 19 A1H2P C9 C17 C 0 1 N N N N N N -25.430 9.085 -2.064 -5.912 0.769 1.586 C9 A1H2P 20 A1H2P N4 N4 N 0 1 Y N N N N N -23.287 8.545 -4.843 -3.385 2.773 -0.053 N4 A1H2P 21 A1H2P N2 N5 N 0 1 Y N N N N N -22.005 8.820 -4.910 -2.121 2.548 0.031 N2 A1H2P 22 A1H2P C11 C18 C 0 1 Y N N N N N -21.474 8.879 -3.667 -1.932 1.308 0.496 C11 A1H2P 23 A1H2P "C1'" C19 C 0 1 N N N N N N -20.019 9.181 -3.491 -0.610 0.632 0.750 "C1'" A1H2P 24 A1H2P "C2'" C20 C 0 1 N N R N N N -19.653 9.426 -2.016 0.235 0.668 -0.526 "C2'" A1H2P 25 A1H2P "C3'" C21 C 0 1 N N R N N N -18.140 9.558 -1.857 1.525 -0.126 -0.306 "C3'" A1H2P 26 A1H2P "C4'" C22 C 0 1 N N S N N N -17.467 8.219 -2.099 2.340 0.536 0.809 "C4'" A1H2P 27 A1H2P N6 N6 N 0 1 Y N N N N N -16.015 8.306 -1.874 3.611 -0.173 0.975 N6 A1H2P 28 A1H2P N7 N7 N 0 1 Y N N N N N -15.246 7.897 -2.850 3.842 -1.114 1.821 N7 A1H2P 29 A1H2P N8 N8 N 0 1 Y N N N N N -14.007 8.017 -2.449 5.055 -1.528 1.714 N8 A1H2P 30 A1H2P C16 C23 C 0 1 Y N N N N N -13.995 8.513 -1.202 5.668 -0.826 0.745 C16 A1H2P 31 A1H2P C18 C24 C 0 1 Y N N N N N -11.551 8.872 -1.073 7.566 -0.162 -0.730 C18 A1H2P 32 A1H2P C19 C25 C 0 1 Y N N N N N -10.402 9.077 -0.341 8.874 -0.306 -1.154 C19 A1H2P 33 A1H2P F1 F1 F 0 1 N N N N N N -9.188 9.217 -0.957 9.353 0.481 -2.142 F1 A1H2P 34 A1H2P F2 F2 F 0 1 N N N N N N -11.718 9.089 3.042 10.017 -2.977 1.033 F2 A1H2P 35 A1H2P F3 F3 F 0 1 N N N N N N -9.303 9.354 1.756 10.976 -1.385 -0.974 F3 A1H2P 36 A1H2P C23 C26 C 0 1 Y N N N N N -15.300 8.682 -0.826 4.738 0.047 0.260 C23 A1H2P 37 A1H2P "O3'" O1 O 0 1 N N N N N N -17.622 10.505 -2.780 1.203 -1.467 0.068 "O3'" A1H2P 38 A1H2P "O2'" O2 O 0 1 N N N N N N -20.140 8.377 -1.161 0.559 2.022 -0.845 "O2'" A1H2P 39 A1H2P C25 C27 C 0 1 N N R N N N -19.565 7.084 -1.355 1.280 2.707 0.182 C25 A1H2P 40 A1H2P OP3 O3 O 0 1 N N N N N N -21.595 5.962 -0.704 0.305 4.847 -0.375 OP3 A1H2P 41 A1H2P "C5'" C28 C 0 1 N N R N N N -18.059 7.168 -1.167 2.612 1.995 0.430 "C5'" A1H2P 42 A1H2P "O5'" O4 O 0 1 N N N N N N -17.761 7.509 0.196 3.405 2.039 -0.758 "O5'" A1H2P 43 A1H2P O6 O5 O 0 1 N N N N N N -27.941 5.649 -0.068 -9.152 -1.405 1.336 O6 A1H2P 44 A1H2P H10 H1 H 0 1 N N N N N N -28.094 8.790 0.489 -8.863 -0.950 -1.704 H10 A1H2P 45 A1H2P H19 H2 H 0 1 N N N N N N -25.641 8.255 -4.021 -5.948 2.616 0.477 H19 A1H2P 46 A1H2P H14 H3 H 0 1 N N N N N N -24.732 6.034 -3.475 -5.696 1.561 -1.763 H14 A1H2P 47 A1H2P H13 H4 H 0 1 N N N N N N -24.387 6.586 -1.801 -5.584 -0.038 -0.987 H13 A1H2P 48 A1H2P H16 H5 H 0 1 N N N N N N -27.130 9.358 -0.783 -7.857 1.665 1.847 H16 A1H2P 49 A1H2P H15 H6 H 0 1 N N N N N N -27.527 8.864 -2.464 -7.734 -0.008 2.445 H15 A1H2P 50 A1H2P H26 H7 H 0 1 N N N N N N -13.772 8.711 1.474 7.525 -2.550 1.676 H26 A1H2P 51 A1H2P H29 H8 H 0 1 N N N N N N -17.331 12.524 -3.138 2.008 -2.401 -1.590 H29 A1H2P 52 A1H2P H30 H9 H 0 1 N N N N N N -18.821 12.100 -2.228 0.825 -3.360 -0.669 H30 A1H2P 53 A1H2P H28 H10 H 0 1 N N N N N N -17.220 12.013 -1.419 0.274 -2.013 -1.695 H28 A1H2P 54 A1H2P H32 H11 H 0 1 N N N N N N -19.705 5.143 -0.428 2.172 4.644 0.486 H32 A1H2P 55 A1H2P H33 H12 H 0 1 N N N N N N -20.120 6.519 0.650 2.056 4.148 -1.219 H33 A1H2P 56 A1H2P H37 H13 H 0 1 N N N N N N -22.492 8.600 -1.747 -3.393 -0.208 1.062 H37 A1H2P 57 A1H2P H1 H14 H 0 1 N N N N N N -31.208 6.613 1.936 -11.789 -1.611 -0.670 H1 A1H2P 58 A1H2P H2 H15 H 0 1 N N N N N N -30.969 7.540 0.417 -11.823 -3.340 -0.246 H2 A1H2P 59 A1H2P H3 H16 H 0 1 N N N N N N -30.199 5.930 0.616 -11.029 -2.173 0.839 H3 A1H2P 60 A1H2P H6 H17 H 0 1 N N N N N N -30.324 8.681 3.225 -9.257 -3.133 -2.935 H6 A1H2P 61 A1H2P H5 H18 H 0 1 N N N N N N -28.714 9.344 2.783 -10.788 -3.900 -2.450 H5 A1H2P 62 A1H2P H4 H19 H 0 1 N N N N N N -30.097 9.517 1.651 -10.754 -2.172 -2.873 H4 A1H2P 63 A1H2P H8 H20 H 0 1 N N N N N N -29.283 6.370 3.568 -8.928 -3.522 0.753 H8 A1H2P 64 A1H2P H9 H21 H 0 1 N N N N N N -28.279 5.663 2.258 -9.722 -4.689 -0.332 H9 A1H2P 65 A1H2P H7 H22 H 0 1 N N N N N N -27.688 7.093 3.169 -8.191 -3.921 -0.817 H7 A1H2P 66 A1H2P H11 H23 H 0 1 N N N N N N -27.134 6.519 -3.137 -7.959 1.879 -0.877 H11 A1H2P 67 A1H2P H12 H24 H 0 1 N N N N N N -26.526 5.354 -1.913 -7.888 0.318 -1.736 H12 A1H2P 68 A1H2P H18 H25 H 0 1 N N N N N N -24.747 9.010 -1.205 -5.492 -0.231 1.480 H18 A1H2P 69 A1H2P H17 H26 H 0 1 N N N N N N -25.427 10.117 -2.446 -5.536 1.227 2.501 H17 A1H2P 70 A1H2P H20 H27 H 0 1 N N N N N N -19.432 8.329 -3.865 -0.083 1.153 1.549 H20 A1H2P 71 A1H2P H21 H28 H 0 1 N N N N N N -19.771 10.081 -4.072 -0.781 -0.404 1.043 H21 A1H2P 72 A1H2P H22 H29 H 0 1 N N N N N N -20.110 10.379 -1.711 -0.329 0.226 -1.347 H22 A1H2P 73 A1H2P H23 H30 H 0 1 N N N N N N -17.923 9.879 -0.828 2.108 -0.135 -1.227 H23 A1H2P 74 A1H2P H24 H31 H 0 1 N N N N N N -17.656 7.913 -3.138 1.777 0.500 1.742 H24 A1H2P 75 A1H2P H25 H32 H 0 1 N N N N N N -11.504 8.800 -2.150 6.925 0.573 -1.193 H25 A1H2P 76 A1H2P H27 H33 H 0 1 N N N N N N -15.667 9.045 0.123 4.874 0.769 -0.531 H27 A1H2P 77 A1H2P H31 H34 H 0 1 N N N N N N -19.772 6.733 -2.377 0.692 2.708 1.100 H31 A1H2P 78 A1H2P H34 H35 H 0 1 N N N N N N -22.002 5.360 -0.092 0.397 5.769 -0.650 H34 A1H2P 79 A1H2P H35 H36 H 0 1 N N N N N N -17.618 6.191 -1.413 3.144 2.489 1.243 H35 A1H2P 80 A1H2P H36 H37 H 0 1 N N N N N N -18.131 6.853 0.775 3.617 2.934 -1.057 H36 A1H2P 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H2P N2 N4 DOUB Y N 1 A1H2P N2 C11 SING Y N 2 A1H2P N4 N3 SING Y N 3 A1H2P C11 "C1'" SING N N 4 A1H2P C11 C28 DOUB Y N 5 A1H2P N3 C4 SING N N 6 A1H2P N3 C28 SING Y N 7 A1H2P "C1'" "C2'" SING N N 8 A1H2P C4 C7 SING N N 9 A1H2P C4 C9 SING N N 10 A1H2P N7 N8 DOUB Y N 11 A1H2P N7 N6 SING Y N 12 A1H2P "O3'" C24 SING N N 13 A1H2P "O3'" "C3'" SING N N 14 A1H2P C7 CAA SING N N 15 A1H2P N8 C16 SING Y N 16 A1H2P CAA NAA SING N N 17 A1H2P "C4'" N6 SING N N 18 A1H2P "C4'" "C3'" SING N N 19 A1H2P "C4'" "C5'" SING N N 20 A1H2P C9 C8 SING N N 21 A1H2P "C2'" "C3'" SING N N 22 A1H2P "C2'" "O2'" SING N N 23 A1H2P N6 C23 SING Y N 24 A1H2P C8 NAA SING N N 25 A1H2P C25 "C5'" SING N N 26 A1H2P C25 "O2'" SING N N 27 A1H2P C25 C26 SING N N 28 A1H2P C16 C23 DOUB Y N 29 A1H2P C16 C17 SING N N 30 A1H2P NAA C6 SING N N 31 A1H2P "C5'" "O5'" SING N N 32 A1H2P C18 C17 DOUB Y N 33 A1H2P C18 C19 SING Y N 34 A1H2P F1 C19 SING N N 35 A1H2P OP3 C26 SING N N 36 A1H2P C17 C20 SING Y N 37 A1H2P C19 C22 DOUB Y N 38 A1H2P C6 O6 DOUB N N 39 A1H2P C6 N1 SING N N 40 A1H2P N1 C2 SING N N 41 A1H2P C20 C21 DOUB Y N 42 A1H2P C22 C21 SING Y N 43 A1H2P C22 F3 SING N N 44 A1H2P C1 C2 SING N N 45 A1H2P C21 F2 SING N N 46 A1H2P C2 C3 SING N N 47 A1H2P C2 CAB SING N N 48 A1H2P N1 H10 SING N N 49 A1H2P C4 H19 SING N N 50 A1H2P C7 H14 SING N N 51 A1H2P C7 H13 SING N N 52 A1H2P C8 H16 SING N N 53 A1H2P C8 H15 SING N N 54 A1H2P C20 H26 SING N N 55 A1H2P C24 H29 SING N N 56 A1H2P C24 H30 SING N N 57 A1H2P C24 H28 SING N N 58 A1H2P C26 H32 SING N N 59 A1H2P C26 H33 SING N N 60 A1H2P C28 H37 SING N N 61 A1H2P C1 H1 SING N N 62 A1H2P C1 H2 SING N N 63 A1H2P C1 H3 SING N N 64 A1H2P C3 H6 SING N N 65 A1H2P C3 H5 SING N N 66 A1H2P C3 H4 SING N N 67 A1H2P CAB H8 SING N N 68 A1H2P CAB H9 SING N N 69 A1H2P CAB H7 SING N N 70 A1H2P CAA H11 SING N N 71 A1H2P CAA H12 SING N N 72 A1H2P C9 H18 SING N N 73 A1H2P C9 H17 SING N N 74 A1H2P "C1'" H20 SING N N 75 A1H2P "C1'" H21 SING N N 76 A1H2P "C2'" H22 SING N N 77 A1H2P "C3'" H23 SING N N 78 A1H2P "C4'" H24 SING N N 79 A1H2P C18 H25 SING N N 80 A1H2P C23 H27 SING N N 81 A1H2P C25 H31 SING N N 82 A1H2P OP3 H34 SING N N 83 A1H2P "C5'" H35 SING N N 84 A1H2P "O5'" H36 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H2P InChI InChI 1.06 "InChI=1S/C28H37F3N8O5/c1-28(2,3)32-27(42)37-7-5-17(6-8-37)38-12-16(33-35-38)11-21-26(43-4)24(25(41)22(14-40)44-21)39-13-20(34-36-39)15-9-18(29)23(31)19(30)10-15/h9-10,12-13,17,21-22,24-26,40-41H,5-8,11,14H2,1-4H3,(H,32,42)/t21-,22-,24+,25+,26+/m1/s1" A1H2P InChIKey InChI 1.06 MZNGHUJSAGCODC-XQNQHWQKSA-N A1H2P SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@@H](Cc2cn(nn2)C3CCN(CC3)C(=O)NC(C)(C)C)O[C@H](CO)[C@H](O)[C@@H]1n4cc(nn4)c5cc(F)c(F)c(F)c5" A1H2P SMILES CACTVS 3.385 "CO[CH]1[CH](Cc2cn(nn2)C3CCN(CC3)C(=O)NC(C)(C)C)O[CH](CO)[CH](O)[CH]1n4cc(nn4)c5cc(F)c(F)c(F)c5" A1H2P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)NC(=O)N1CCC(CC1)n2cc(nn2)C[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)n4cc(nn4)c5cc(c(c(c5)F)F)F)OC" A1H2P SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)NC(=O)N1CCC(CC1)n2cc(nn2)CC3C(C(C(C(O3)CO)O)n4cc(nn4)c5cc(c(c(c5)F)F)F)OC" # _pdbx_chem_comp_identifier.comp_id A1H2P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-~{tert}-butyl-4-[4-[[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-2-yl]methyl]-1,2,3-triazol-1-yl]piperidine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H2P "Create component" 2024-01-22 PDBE A1H2P "Initial release" 2025-01-29 RCSB #