data_A1H38
#
_chem_comp.id A1H38
_chem_comp.name "(1~{R},4~{S},5~{R},8~{S})-6-oxa-2-azabicyclo[3.2.1]octane-4,8-diol"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H11 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "AD-DGJ; 3,6-anhydro-D-1-deoxygalactonojirimycin"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-02-13
_chem_comp.pdbx_modified_date 2024-07-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 145.156
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1H38
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8RZH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1H38 C01 C1 C 0 1 N N N N N N 38.924 7.391 54.119 -1.482 1.021 0.083 C01 A1H38 1
A1H38 C02 C2 C 0 1 N N R N N N 38.935 6.704 55.612 -1.383 -0.319 -0.650 C02 A1H38 2
A1H38 C03 C3 C 0 1 N N S N N N 38.037 7.383 56.564 0.102 -0.632 -0.914 C03 A1H38 3
A1H38 C04 C4 C 0 1 N N S N N N 37.089 8.141 55.955 0.765 -0.794 0.482 C04 A1H38 4
A1H38 C05 C5 C 0 1 N N R N N N 37.629 9.242 55.384 0.759 0.692 0.942 C05 A1H38 5
A1H38 C06 C6 C 0 1 N N N N N N 38.578 9.736 56.431 1.081 1.431 -0.378 C06 A1H38 6
A1H38 N01 N1 N 0 1 N N N N N N 38.433 8.918 54.223 -0.643 1.012 1.288 N01 A1H38 7
A1H38 O02 O1 O 0 1 N N N N N N 38.572 5.371 55.368 -1.956 -1.349 0.158 O02 A1H38 8
A1H38 O03 O2 O 0 1 N N N N N N 38.854 8.421 57.232 0.693 0.559 -1.471 O03 A1H38 9
A1H38 O04 O3 O 0 1 N N N N N N 36.072 8.582 56.846 2.096 -1.302 0.371 O04 A1H38 10
A1H38 H011 H1 H 0 0 N N N N N N 39.939 7.362 53.697 -1.149 1.819 -0.581 H011 A1H38 11
A1H38 H012 H2 H 0 0 N N N N N N 38.239 6.831 53.465 -2.519 1.200 0.368 H012 A1H38 12
A1H38 H021 H3 H 0 0 N N N N N N 39.968 6.756 55.987 -1.918 -0.258 -1.597 H021 A1H38 13
A1H38 H031 H4 H 0 0 N N N N N N 37.621 6.674 57.295 0.240 -1.506 -1.550 H031 A1H38 14
A1H38 H041 H5 H 0 0 N N N N N N 36.608 7.538 55.171 0.158 -1.417 1.140 H041 A1H38 15
A1H38 H051 H6 H 0 0 N N N N N N 36.880 10.012 55.148 1.471 0.901 1.741 H051 A1H38 16
A1H38 H072 H7 H 0 0 N N N N N N 39.499 10.137 55.984 0.515 2.361 -0.431 H072 A1H38 17
A1H38 H071 H8 H 0 0 N N N N N N 38.114 10.505 57.066 2.149 1.641 -0.435 H071 A1H38 18
A1H38 H1 H9 H 0 1 N N N N N N 37.892 9.123 53.408 -1.003 0.366 1.974 H1 A1H38 19
A1H38 H101 H11 H 0 0 N N N N N N 38.553 4.892 56.188 -2.889 -1.209 0.371 H101 A1H38 20
A1H38 H081 H12 H 0 0 N N N N N N 35.670 7.830 57.266 2.544 -1.418 1.220 H081 A1H38 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1H38 C02 C01 SING N N 1
A1H38 N01 C05 SING N N 2
A1H38 C06 C05 SING N N 3
A1H38 C05 C04 SING N N 4
A1H38 O04 C04 SING N N 5
A1H38 C04 C03 SING N N 6
A1H38 O03 C03 SING N N 7
A1H38 C03 C02 SING N N 8
A1H38 O02 C02 SING N N 9
A1H38 C01 N01 SING N N 10
A1H38 C06 O03 SING N N 11
A1H38 C01 H011 SING N N 12
A1H38 C01 H012 SING N N 13
A1H38 C02 H021 SING N N 14
A1H38 C03 H031 SING N N 15
A1H38 C04 H041 SING N N 16
A1H38 C05 H051 SING N N 17
A1H38 C06 H072 SING N N 18
A1H38 C06 H071 SING N N 19
A1H38 N01 H1 SING N N 20
A1H38 O02 H101 SING N N 21
A1H38 O04 H081 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1H38 InChI InChI 1.06 "InChI=1S/C6H11NO3/c8-4-1-7-3-2-10-6(4)5(3)9/h3-9H,1-2H2"
A1H38 InChIKey InChI 1.06 WVZIAVGWQFETLH-UHFFFAOYSA-N
A1H38 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CN[C@@H]2CO[C@@H]1[C@H]2O"
A1H38 SMILES CACTVS 3.385 "O[CH]1CN[CH]2CO[CH]1[CH]2O"
A1H38 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]2[C@H]([C@H](N1)CO2)O)O"
A1H38 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C2C(C(N1)CO2)O)O"
#
_pdbx_chem_comp_identifier.comp_id A1H38
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(1~{R},4~{S},5~{R},8~{S})-6-oxa-2-azabicyclo[3.2.1]octane-4,8-diol"
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 A1H38 AD-DGJ AUTHOR ?
2 A1H38 3,6-anhydro-D-1-deoxygalactonojirimycin AUTHOR ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1H38 "Create component" 2024-02-13 PDBE
A1H38 "Initial release" 2024-07-31 RCSB
#