data_A1H39 # _chem_comp.id A1H39 _chem_comp.name "(1~{R},4~{S},5~{R},8~{S})-2,6-dioxabicyclo[3.2.1]octane-4,8-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ADG (3,6-anhydro-D-galactose)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-13 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H39 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RZG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H39 C01 C1 C 0 1 N N N N N N -73.705 62.869 20.966 -1.470 1.010 0.078 C01 A1H39 1 A1H39 C02 C2 C 0 1 N N S N N N -72.826 61.804 20.035 -1.387 -0.344 -0.629 C02 A1H39 2 A1H39 C03 C3 C 0 1 N N R N N N -71.815 62.473 19.234 0.096 -0.673 -0.894 C03 A1H39 3 A1H39 C04 C4 C 0 1 N N S N N N -70.950 63.159 19.969 0.766 -0.788 0.504 C04 A1H39 4 A1H39 C05 C5 C 0 1 N N R N N N -71.547 64.196 20.556 0.757 0.714 0.912 C05 A1H39 5 A1H39 C06 C6 C 0 1 N N N N N N -72.265 64.794 19.385 1.081 1.406 -0.434 C06 A1H39 6 A1H39 O01 O1 O 0 1 N N N N N N -72.518 63.806 21.556 -0.614 1.030 1.223 O01 A1H39 7 A1H39 O02 O2 O 0 1 N N N N N N -72.078 61.004 20.907 -1.964 -1.355 0.200 O02 A1H39 8 A1H39 O03 O3 O 0 1 N N N N N N -72.455 63.561 18.453 0.687 0.496 -1.495 O03 A1H39 9 A1H39 O04 O4 O 0 1 N N N N N N -69.839 63.573 19.176 2.098 -1.295 0.404 O04 A1H39 10 A1H39 H011 H1 H 0 0 N N N N N N -74.414 63.449 20.357 -1.167 1.797 -0.612 H011 A1H39 11 A1H39 H012 H2 H 0 0 N N N N N N -74.249 62.351 21.769 -2.499 1.185 0.395 H012 A1H39 12 A1H39 H021 H3 H 0 0 N N N N N N -73.519 61.219 19.412 -1.925 -0.296 -1.576 H021 A1H39 13 A1H39 H031 H4 H 0 0 N N N N N N -71.323 61.759 18.557 0.227 -1.570 -1.499 H031 A1H39 14 A1H39 H041 H5 H 0 0 N N N N N N -70.558 62.496 20.754 0.165 -1.390 1.185 H041 A1H39 15 A1H39 H051 H6 H 0 0 N N N N N N -70.830 64.920 20.969 1.462 0.955 1.708 H051 A1H39 16 A1H39 H071 H7 H 0 0 N N N N N N -73.234 65.220 19.686 0.517 2.335 -0.519 H071 A1H39 17 A1H39 H072 H8 H 0 0 N N N N N N -71.657 65.572 18.899 2.149 1.609 -0.499 H072 A1H39 18 A1H39 H101 H9 H 0 0 N N N N N N -71.563 60.383 20.405 -2.895 -1.203 0.414 H101 A1H39 19 A1H39 H081 H10 H 0 0 N N N N N N -69.437 62.813 18.773 2.551 -1.381 1.254 H081 A1H39 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H39 C02 C01 SING N N 1 A1H39 O01 C05 SING N N 2 A1H39 C06 C05 SING N N 3 A1H39 C05 C04 SING N N 4 A1H39 O04 C04 SING N N 5 A1H39 C04 C03 SING N N 6 A1H39 O03 C03 SING N N 7 A1H39 C03 C02 SING N N 8 A1H39 O02 C02 SING N N 9 A1H39 C01 O01 SING N N 10 A1H39 C06 O03 SING N N 11 A1H39 C01 H011 SING N N 12 A1H39 C01 H012 SING N N 13 A1H39 C02 H021 SING N N 14 A1H39 C03 H031 SING N N 15 A1H39 C04 H041 SING N N 16 A1H39 C05 H051 SING N N 17 A1H39 C06 H071 SING N N 18 A1H39 C06 H072 SING N N 19 A1H39 O02 H101 SING N N 20 A1H39 O04 H081 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H39 InChI InChI 1.06 "InChI=1S/C6H10O4/c7-3-1-9-4-2-10-6(3)5(4)8/h3-8H,1-2H2/t3-,4+,5-,6+/m0/s1" A1H39 InChIKey InChI 1.06 YOSORPVRDQOTPQ-BGPJRJDNSA-N A1H39 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CO[C@@H]2CO[C@H]1[C@H]2O" A1H39 SMILES CACTVS 3.385 "O[CH]1CO[CH]2CO[CH]1[CH]2O" A1H39 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]2[C@H]([C@H](O1)CO2)O)O" A1H39 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C2C(C(O1)CO2)O)O" # _pdbx_chem_comp_identifier.comp_id A1H39 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},4~{S},5~{R},8~{S})-2,6-dioxabicyclo[3.2.1]octane-4,8-diol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H39 _pdbx_chem_comp_synonyms.name "ADG (3,6-anhydro-D-galactose)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H39 "Create component" 2024-02-13 PDBE A1H39 "Initial release" 2024-07-31 RCSB #