data_A1H3A # _chem_comp.id A1H3A _chem_comp.name "5-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-2-chloranyl-benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 Cl N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-01 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.884 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RV9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3A C1 C1 C 0 1 N N R N N N -54.071 66.908 -29.494 -3.497 2.042 0.666 C1 A1H3A 1 A1H3A C11 C2 C 0 1 Y N N N N N -51.289 64.796 -28.765 -4.923 -0.762 -0.403 C11 A1H3A 2 A1H3A C12 C3 C 0 1 Y N N N N N -50.538 64.067 -29.677 -5.031 -2.062 0.119 C12 A1H3A 3 A1H3A C14 C4 C 0 1 Y N N N N N -52.526 64.430 -30.512 -3.055 -1.324 0.623 C14 A1H3A 4 A1H3A C16 C5 C 0 1 Y N N N N N -49.482 64.805 -27.292 -7.064 -0.934 -1.223 C16 A1H3A 5 A1H3A C18 C6 C 0 1 Y N N N N N -49.228 63.719 -29.352 -6.234 -2.759 -0.079 C18 A1H3A 6 A1H3A C2 C7 C 0 1 N N S N N N -55.516 67.107 -29.051 -2.356 3.081 0.541 C2 A1H3A 7 A1H3A C20 C8 C 0 1 N N N N N N -58.849 66.371 -30.569 2.770 1.670 1.137 C20 A1H3A 8 A1H3A C21 C9 C 0 1 Y N N N N N -59.297 66.555 -31.995 4.017 1.044 0.568 C21 A1H3A 9 A1H3A C22 C10 C 0 1 Y N N N N N -58.531 67.308 -32.872 4.904 1.814 -0.163 C22 A1H3A 10 A1H3A C23 C11 C 0 1 Y N N N N N -58.963 67.471 -34.180 6.052 1.249 -0.688 C23 A1H3A 11 A1H3A C24 C12 C 0 1 Y N N N N N -60.153 66.889 -34.607 6.319 -0.091 -0.487 C24 A1H3A 12 A1H3A C25 C13 C 0 1 Y N N N N N -60.916 66.142 -33.727 5.427 -0.875 0.250 C25 A1H3A 13 A1H3A C26 C14 C 0 1 Y N N N N N -60.487 65.980 -32.417 4.274 -0.294 0.782 C26 A1H3A 14 A1H3A C28 C15 C 0 1 N N N N N N -62.209 65.498 -34.137 5.706 -2.308 0.470 C28 A1H3A 15 A1H3A C3 C16 C 0 1 N N S N N N -55.866 65.839 -28.275 -1.204 2.299 -0.121 C3 A1H3A 16 A1H3A C5 C17 C 0 1 N N R N N N -53.584 65.756 -28.630 -3.092 0.985 -0.393 C5 A1H3A 17 A1H3A C9 C18 C 0 1 N N N N N N -57.122 65.121 -28.758 0.031 2.331 0.781 C9 A1H3A 18 A1H3A N13 N1 N 0 1 Y N N N N N -51.325 63.849 -30.753 -3.856 -2.343 0.733 N13 A1H3A 19 A1H3A N15 N2 N 0 1 Y N N N N N -50.748 65.156 -27.575 -5.955 -0.243 -1.061 N15 A1H3A 20 A1H3A N17 N3 N 0 1 Y N N N N N -48.732 64.102 -28.156 -7.211 -2.158 -0.750 N17 A1H3A 21 A1H3A N19 N4 N 0 1 N N N N N N -48.452 63.006 -30.211 -6.398 -4.043 0.412 N19 A1H3A 22 A1H3A N8 N5 N 0 1 Y N N N N N -52.496 65.000 -29.297 -3.669 -0.321 -0.065 N8 A1H3A 23 A1H3A O29 O1 O 0 1 N N N N N N -62.425 65.173 -35.326 6.712 -2.809 0.009 O29 A1H3A 24 A1H3A O30 O2 O 0 1 N N N N N N -63.060 65.299 -33.247 4.844 -3.060 1.181 O30 A1H3A 25 A1H3A O4 O3 O 0 1 N N N N N N -54.743 64.960 -28.404 -1.652 0.944 -0.294 O4 A1H3A 26 A1H3A O6 O4 O 0 1 N N N N N N -55.643 68.247 -28.192 -2.761 4.171 -0.289 O6 A1H3A 27 A1H3A O7 O5 O 0 1 N N N N N N -53.250 68.071 -29.301 -4.759 2.629 0.344 O7 A1H3A 28 A1H3A S10 S1 S 0 1 N N N N N N -57.407 65.361 -30.482 1.422 1.536 -0.070 S10 A1H3A 29 A1H3A CL1 CL1 CL 0 0 N N N N N N -60.675 67.128 -36.305 7.760 -0.800 -1.149 CL1 A1H3A 30 A1H3A H1 H1 H 0 1 N N N N N N -54.056 66.600 -30.550 -3.517 1.605 1.665 H1 A1H3A 31 A1H3A H2 H2 H 0 1 N N N N N N -53.369 64.434 -31.187 -2.053 -1.278 1.024 H2 A1H3A 32 A1H3A H3 H3 H 0 1 N N N N N N -49.056 65.096 -26.343 -7.884 -0.482 -1.762 H3 A1H3A 33 A1H3A H4 H4 H 0 1 N N N N N N -56.168 67.198 -29.932 -2.057 3.440 1.526 H4 A1H3A 34 A1H3A H5 H5 H 0 1 N N N N N N -58.625 67.356 -30.133 2.489 1.152 2.054 H5 A1H3A 35 A1H3A H6 H6 H 0 1 N N N N N N -59.658 65.892 -29.997 2.958 2.721 1.356 H6 A1H3A 36 A1H3A H7 H7 H 0 1 N N N N N N -57.609 67.762 -32.541 4.700 2.863 -0.323 H7 A1H3A 37 A1H3A H8 H8 H 0 1 N N N N N N -58.372 68.053 -34.872 6.740 1.856 -1.258 H8 A1H3A 38 A1H3A H9 H9 H 0 1 N N N N N N -61.082 65.404 -31.723 3.580 -0.894 1.353 H9 A1H3A 39 A1H3A H10 H10 H 0 1 N N N N N N -56.005 66.108 -27.217 -0.967 2.738 -1.090 H10 A1H3A 40 A1H3A H11 H11 H 0 1 N N N N N N -53.213 66.161 -27.677 -3.399 1.303 -1.389 H11 A1H3A 41 A1H3A H12 H12 H 0 1 N N N N N N -57.987 65.507 -28.199 0.288 3.365 1.010 H12 A1H3A 42 A1H3A H13 H13 H 0 1 N N N N N N -57.011 64.044 -28.564 -0.181 1.796 1.707 H13 A1H3A 43 A1H3A H14 H14 H 0 1 N N N N N N -47.552 62.855 -29.801 -5.677 -4.471 0.900 H14 A1H3A 44 A1H3A H15 H15 H 0 1 N N N N N N -48.885 62.124 -30.398 -7.234 -4.514 0.269 H15 A1H3A 45 A1H3A H16 H16 H 0 1 N N N N N N -63.828 64.890 -33.628 5.068 -3.993 1.298 H16 A1H3A 46 A1H3A H17 H17 H 0 1 N N N N N N -56.551 68.348 -27.931 -3.522 4.663 0.051 H17 A1H3A 47 A1H3A H18 H18 H 0 1 N N N N N N -52.365 67.887 -29.594 -5.014 3.358 0.926 H18 A1H3A 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3A CL1 C24 SING N N 1 A1H3A O29 C28 DOUB N N 2 A1H3A C24 C23 DOUB Y N 3 A1H3A C24 C25 SING Y N 4 A1H3A C23 C22 SING Y N 5 A1H3A C28 C25 SING N N 6 A1H3A C28 O30 SING N N 7 A1H3A C25 C26 DOUB Y N 8 A1H3A C22 C21 DOUB Y N 9 A1H3A C26 C21 SING Y N 10 A1H3A C21 C20 SING N N 11 A1H3A N13 C14 DOUB Y N 12 A1H3A N13 C12 SING Y N 13 A1H3A C20 S10 SING N N 14 A1H3A C14 N8 SING Y N 15 A1H3A S10 C9 SING N N 16 A1H3A N19 C18 SING N N 17 A1H3A C12 C18 DOUB Y N 18 A1H3A C12 C11 SING Y N 19 A1H3A C1 O7 SING N N 20 A1H3A C1 C2 SING N N 21 A1H3A C1 C5 SING N N 22 A1H3A C18 N17 SING Y N 23 A1H3A N8 C11 SING Y N 24 A1H3A N8 C5 SING N N 25 A1H3A C2 C3 SING N N 26 A1H3A C2 O6 SING N N 27 A1H3A C11 N15 DOUB Y N 28 A1H3A C9 C3 SING N N 29 A1H3A C5 O4 SING N N 30 A1H3A O4 C3 SING N N 31 A1H3A N17 C16 DOUB Y N 32 A1H3A N15 C16 SING Y N 33 A1H3A C1 H1 SING N N 34 A1H3A C14 H2 SING N N 35 A1H3A C16 H3 SING N N 36 A1H3A C2 H4 SING N N 37 A1H3A C20 H5 SING N N 38 A1H3A C20 H6 SING N N 39 A1H3A C22 H7 SING N N 40 A1H3A C23 H8 SING N N 41 A1H3A C26 H9 SING N N 42 A1H3A C3 H10 SING N N 43 A1H3A C5 H11 SING N N 44 A1H3A C9 H12 SING N N 45 A1H3A C9 H13 SING N N 46 A1H3A N19 H14 SING N N 47 A1H3A N19 H15 SING N N 48 A1H3A O30 H16 SING N N 49 A1H3A O6 H17 SING N N 50 A1H3A O7 H18 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3A InChI InChI 1.06 "InChI=1S/C18H18ClN5O5S/c19-10-2-1-8(3-9(10)18(27)28)4-30-5-11-13(25)14(26)17(29-11)24-7-23-12-15(20)21-6-22-16(12)24/h1-3,6-7,11,13-14,17,25-26H,4-5H2,(H,27,28)(H2,20,21,22)/t11-,13-,14-,17-/m1/s1" A1H3A InChIKey InChI 1.06 LWRXIEBTUHHZRW-LSCFUAHRSA-N A1H3A SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCc4ccc(Cl)c(c4)C(O)=O)[C@@H](O)[C@H]3O" A1H3A SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCc4ccc(Cl)c(c4)C(O)=O)[CH](O)[CH]3O" A1H3A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)C(=O)O)Cl" A1H3A SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)C(=O)O)Cl" # _pdbx_chem_comp_identifier.comp_id A1H3A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-2-chloranyl-benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3A "Create component" 2024-02-01 PDBE A1H3A "Initial release" 2024-02-14 RCSB #