data_A1H3B # _chem_comp.id A1H3B _chem_comp.name "3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(4-hydroxyphenyl)benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-01 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.534 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RV6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3B C1 C1 C 0 1 N N R N N N -86.312 14.113 3.808 4.215 2.054 -1.029 C1 A1H3B 1 A1H3B C11 C2 C 0 1 Y N N N N N -83.066 12.767 3.175 6.011 -0.131 0.707 C11 A1H3B 2 A1H3B C12 C3 C 0 1 Y N N N N N -82.086 12.429 4.098 6.408 -1.461 0.490 C12 A1H3B 3 A1H3B C14 C4 C 0 1 Y N N N N N -83.401 13.993 4.942 4.394 -1.254 -0.285 C14 A1H3B 4 A1H3B C16 C5 C 0 1 Y N N N N N -82.163 11.199 1.694 8.052 0.301 1.673 C16 A1H3B 5 A1H3B C18 C6 C 0 1 Y N N N N N -81.140 11.442 3.777 7.692 -1.848 0.912 C18 A1H3B 6 A1H3B C2 C7 C 0 1 N N R N N N -87.214 15.242 3.309 2.897 2.846 -1.207 C2 A1H3B 7 A1H3B C20 C8 C 0 1 N N N N N N -87.850 19.055 5.094 -1.787 0.336 -1.818 C20 A1H3B 8 A1H3B C21 C9 C 0 1 Y N N N N N -88.427 19.273 6.488 -2.953 -0.401 -1.210 C21 A1H3B 9 A1H3B C22 C10 C 0 1 Y N N N N N -88.973 18.214 7.194 -4.037 0.305 -0.728 C22 A1H3B 10 A1H3B C23 C11 C 0 1 Y N N N N N -89.510 18.403 8.469 -5.119 -0.370 -0.164 C23 A1H3B 11 A1H3B C24 C12 C 0 1 Y N N N N N -89.522 19.676 9.047 -5.106 -1.759 -0.087 C24 A1H3B 12 A1H3B C25 C13 C 0 1 Y N N N N N -88.986 20.755 8.339 -4.009 -2.468 -0.576 C25 A1H3B 13 A1H3B C26 C14 C 0 1 Y N N N N N -88.450 20.549 7.063 -2.934 -1.780 -1.143 C26 A1H3B 14 A1H3B C27 C15 C 0 1 N N N N N N -88.977 22.142 8.938 -3.986 -3.943 -0.498 C27 A1H3B 15 A1H3B C3 C16 C 0 1 N N R N N N -86.252 16.238 2.654 1.844 1.997 -0.468 C3 A1H3B 16 A1H3B C30 C17 C 0 1 Y N N N N N -90.076 17.197 9.150 -6.283 0.391 0.354 C30 A1H3B 17 A1H3B C31 C18 C 0 1 Y N N N N N -89.747 15.941 8.637 -7.364 -0.284 0.918 C31 A1H3B 18 A1H3B C32 C19 C 0 1 Y N N N N N -90.246 14.780 9.216 -8.444 0.427 1.398 C32 A1H3B 19 A1H3B C33 C20 C 0 1 Y N N N N N -91.091 14.868 10.315 -8.455 1.813 1.320 C33 A1H3B 20 A1H3B C34 C21 C 0 1 Y N N N N N -91.433 16.121 10.831 -7.379 2.488 0.759 C34 A1H3B 21 A1H3B C35 C22 C 0 1 Y N N N N N -90.929 17.288 10.252 -6.294 1.783 0.282 C35 A1H3B 22 A1H3B C5 C23 C 0 1 N N R N N N -85.020 14.330 3.029 3.900 1.172 0.206 C5 A1H3B 23 A1H3B C9 C24 C 0 1 N N N N N N -86.395 17.677 3.144 0.729 1.596 -1.435 C9 A1H3B 24 A1H3B N13 N1 N 0 1 Y N N N N N -82.318 13.205 5.183 5.376 -2.092 -0.119 N13 A1H3B 25 A1H3B N15 N2 N 0 1 Y N N N N N -83.090 12.138 1.978 6.859 0.708 1.294 N15 A1H3B 26 A1H3B N17 N3 N 0 1 Y N N N N N -81.190 10.850 2.558 8.468 -0.939 1.494 N17 A1H3B 27 A1H3B N19 N4 N 0 1 N N N N N N -80.171 11.070 4.654 8.138 -3.144 0.725 N19 A1H3B 28 A1H3B N8 N5 N 0 1 Y N N N N N -83.852 13.716 3.715 4.738 -0.030 0.208 N8 A1H3B 29 A1H3B O28 O1 O 0 1 N N N N N N -90.065 22.723 9.171 -3.029 -4.559 -0.924 O28 A1H3B 30 A1H3B O29 O2 O 0 1 N N N N N N -87.879 22.695 9.189 -5.025 -4.605 0.045 O29 A1H3B 31 A1H3B O36 O3 O 0 1 N N N N N N -91.577 13.721 10.874 -9.521 2.510 1.793 O36 A1H3B 32 A1H3B O4 O4 O 0 1 N N N N N N -84.925 15.749 2.918 2.511 0.823 0.024 O4 A1H3B 33 A1H3B O6 O5 O 0 1 N N N N N N -88.150 14.780 2.324 3.006 4.140 -0.609 O6 A1H3B 34 A1H3B O7 O6 O 0 1 N N N N N N -86.830 12.794 3.580 5.308 2.936 -0.760 O7 A1H3B 35 A1H3B S10 S1 S 0 1 N N N N N N -86.639 17.764 4.890 -0.576 0.725 -0.524 S10 A1H3B 36 A1H3B H37 H1 H 0 1 N N N N N N -86.113 14.263 4.879 4.421 1.439 -1.905 H37 A1H3B 37 A1H3B H1 H2 H 0 1 N N N N N N -83.823 14.717 5.624 3.447 -1.492 -0.747 H1 A1H3B 38 A1H3B H46 H4 H 0 1 N N N N N N -82.203 10.707 0.734 8.716 1.009 2.147 H46 A1H3B 39 A1H3B H38 H5 H 0 1 N N N N N N -87.727 15.718 4.158 2.644 2.934 -2.263 H38 A1H3B 40 A1H3B H50 H6 H 0 1 N N N N N N -87.379 19.999 4.782 -1.319 -0.288 -2.579 H50 A1H3B 41 A1H3B H49 H7 H 0 1 N N N N N N -88.691 18.825 4.423 -2.141 1.261 -2.274 H49 A1H3B 42 A1H3B H51 H8 H 0 1 N N N N N N -88.984 17.228 6.752 -4.048 1.383 -0.788 H51 A1H3B 43 A1H3B H52 H9 H 0 1 N N N N N N -89.941 19.824 10.031 -5.941 -2.286 0.349 H52 A1H3B 44 A1H3B H53 H10 H 0 1 N N N N N N -88.048 21.387 6.513 -2.085 -2.327 -1.526 H53 A1H3B 45 A1H3B H39 H11 H 0 1 N N N N N N -86.435 16.226 1.569 1.427 2.566 0.363 H39 A1H3B 46 A1H3B H54 H12 H 0 1 N N N N N N -89.096 15.870 7.778 -7.356 -1.362 0.978 H54 A1H3B 47 A1H3B H55 H13 H 0 1 N N N N N N -89.978 13.814 8.813 -9.282 -0.096 1.835 H55 A1H3B 48 A1H3B H56 H14 H 0 1 N N N N N N -92.092 16.187 11.684 -7.391 3.566 0.700 H56 A1H3B 49 A1H3B H57 H15 H 0 1 N N N N N N -91.197 18.254 10.654 -5.457 2.308 -0.154 H57 A1H3B 50 A1H3B H40 H16 H 0 1 N N N N N N -85.130 13.881 2.031 4.036 1.738 1.127 H40 A1H3B 51 A1H3B H44 H17 H 0 1 N N N N N N -85.481 18.232 2.886 0.312 2.489 -1.901 H44 A1H3B 52 A1H3B H43 H18 H 0 1 N N N N N N -87.258 18.138 2.642 1.134 0.940 -2.205 H43 A1H3B 53 A1H3B H48 H20 H 0 1 N N N N N N -79.598 10.364 4.238 7.562 -3.799 0.299 H48 A1H3B 54 A1H3B H47 H21 H 0 1 N N N N N N -79.607 11.863 4.884 9.026 -3.399 1.020 H47 A1H3B 55 A1H3B H3 H22 H 0 1 N N N N N N -88.035 23.558 9.555 -4.965 -5.570 0.074 H3 A1H3B 56 A1H3B H58 H23 H 0 1 N N N N N N -92.136 13.939 11.611 -9.445 2.760 2.724 H58 A1H3B 57 A1H3B H41 H24 H 0 1 N N N N N N -88.692 15.505 2.037 3.695 4.696 -0.997 H41 A1H3B 58 A1H3B H42 H25 H 0 1 N N N N N N -86.217 12.150 3.915 5.485 3.569 -1.468 H42 A1H3B 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3B C1 C2 SING N N 1 A1H3B C1 C5 SING N N 2 A1H3B O7 C1 SING N N 3 A1H3B C2 C3 SING N N 4 A1H3B O6 C2 SING N N 5 A1H3B O4 C3 SING N N 6 A1H3B C3 C9 SING N N 7 A1H3B C5 O4 SING N N 8 A1H3B N8 C5 SING N N 9 A1H3B C11 N8 SING Y N 10 A1H3B C14 N8 SING Y N 11 A1H3B C9 S10 SING N N 12 A1H3B S10 C20 SING N N 13 A1H3B C11 C12 DOUB Y N 14 A1H3B N15 C11 SING Y N 15 A1H3B C12 N13 SING Y N 16 A1H3B C12 C18 SING Y N 17 A1H3B N13 C14 DOUB Y N 18 A1H3B C16 N15 DOUB Y N 19 A1H3B N17 C16 SING Y N 20 A1H3B C18 N17 DOUB Y N 21 A1H3B N19 C18 SING N N 22 A1H3B C20 C21 SING N N 23 A1H3B C21 C22 DOUB Y N 24 A1H3B C21 C26 SING Y N 25 A1H3B C22 C23 SING Y N 26 A1H3B C23 C24 DOUB Y N 27 A1H3B C30 C23 SING N N 28 A1H3B C24 C25 SING Y N 29 A1H3B C26 C25 DOUB Y N 30 A1H3B C25 C27 SING N N 31 A1H3B O28 C27 DOUB N N 32 A1H3B C27 O29 SING N N 33 A1H3B C30 C31 DOUB Y N 34 A1H3B C35 C30 SING Y N 35 A1H3B C31 C32 SING Y N 36 A1H3B C32 C33 DOUB Y N 37 A1H3B C33 C34 SING Y N 38 A1H3B O36 C33 SING N N 39 A1H3B C34 C35 DOUB Y N 40 A1H3B C1 H37 SING N N 41 A1H3B C14 H1 SING N N 42 A1H3B C16 H46 SING N N 43 A1H3B C2 H38 SING N N 44 A1H3B C20 H50 SING N N 45 A1H3B C20 H49 SING N N 46 A1H3B C22 H51 SING N N 47 A1H3B C24 H52 SING N N 48 A1H3B C26 H53 SING N N 49 A1H3B C3 H39 SING N N 50 A1H3B C31 H54 SING N N 51 A1H3B C32 H55 SING N N 52 A1H3B C34 H56 SING N N 53 A1H3B C35 H57 SING N N 54 A1H3B C5 H40 SING N N 55 A1H3B C9 H44 SING N N 56 A1H3B C9 H43 SING N N 57 A1H3B N19 H48 SING N N 58 A1H3B N19 H47 SING N N 59 A1H3B O29 H3 SING N N 60 A1H3B O36 H58 SING N N 61 A1H3B O6 H41 SING N N 62 A1H3B O7 H42 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3B InChI InChI 1.06 "InChI=1S/C24H23N5O6S/c25-21-18-22(27-10-26-21)29(11-28-18)23-20(32)19(31)17(35-23)9-36-8-12-5-14(7-15(6-12)24(33)34)13-1-3-16(30)4-2-13/h1-7,10-11,17,19-20,23,30-32H,8-9H2,(H,33,34)(H2,25,26,27)" A1H3B InChIKey InChI 1.06 PZWOIOSYCOECFR-UHFFFAOYSA-N A1H3B SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](CSCc4cc(cc(c4)c5ccc(O)cc5)C(O)=O)[C@H](O)[C@H]3O" A1H3B SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCc4cc(cc(c4)c5ccc(O)cc5)C(O)=O)[CH](O)[CH]3O" A1H3B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2cc(cc(c2)C(=O)O)CSC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O" A1H3B SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2cc(cc(c2)C(=O)O)CSCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1H3B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(4-hydroxyphenyl)benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3B "Create component" 2024-02-01 PDBE A1H3B "Initial release" 2024-02-14 RCSB #