data_A1H3C # _chem_comp.id A1H3C _chem_comp.name "5-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-2-phenyl-benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-01 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RV4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3C C1 C1 C 0 1 N N S N N N 85.298 -13.418 29.607 4.435 -2.016 0.474 C1 A1H3C 1 A1H3C C11 C2 C 0 1 Y N N N N N 81.891 -12.237 29.043 5.675 0.921 -0.451 C11 A1H3C 2 A1H3C C12 C3 C 0 1 Y N N N N N 80.893 -11.977 30.026 5.745 2.187 0.154 C12 A1H3C 3 A1H3C C14 C4 C 0 1 Y N N N N N 82.236 -13.420 30.857 3.831 1.319 0.690 C14 A1H3C 4 A1H3C C16 C5 C 0 1 Y N N N N N 80.960 -10.791 27.602 7.767 1.253 -1.345 C16 A1H3C 5 A1H3C C18 C6 C 0 1 Y N N N N N 79.887 -11.031 29.658 6.904 2.956 -0.047 C18 A1H3C 6 A1H3C C2 C7 C 0 1 N N R N N N 86.173 -14.558 29.052 3.341 -3.100 0.327 C2 A1H3C 7 A1H3C C20 C8 C 0 1 N N N N N N 86.911 -17.075 31.264 -1.809 -1.991 1.260 C20 A1H3C 8 A1H3C C21 C9 C 0 1 Y N N N N N 87.436 -18.253 32.080 -3.111 -1.392 0.795 C21 A1H3C 9 A1H3C C22 C10 C 0 1 Y N N N N N 86.640 -18.821 33.079 -3.996 -2.159 0.056 C22 A1H3C 10 A1H3C C23 C11 C 0 1 Y N N N N N 87.086 -19.908 33.858 -5.193 -1.624 -0.376 C23 A1H3C 11 A1H3C C24 C12 C 0 1 Y N N N N N 88.358 -20.487 33.681 -5.518 -0.306 -0.070 C24 A1H3C 12 A1H3C C25 C13 C 0 1 Y N N N N N 89.190 -19.896 32.650 -4.620 0.474 0.682 C25 A1H3C 13 A1H3C C26 C14 C 0 1 Y N N N N N 88.715 -18.801 31.879 -3.417 -0.085 1.114 C26 A1H3C 14 A1H3C C27 C15 C 0 1 N N N N N N 90.587 -20.331 32.266 -4.950 1.873 1.015 C27 A1H3C 15 A1H3C C3 C16 C 0 1 N N S N N N 85.151 -15.552 28.457 2.122 -2.335 -0.224 C3 A1H3C 16 A1H3C C30 C17 C 0 1 Y N N N N N 88.670 -21.629 34.599 -6.802 0.273 -0.532 C30 A1H3C 17 A1H3C C31 C18 C 0 1 Y N N N N N 89.290 -22.827 34.166 -6.807 1.411 -1.336 C31 A1H3C 18 A1H3C C32 C19 C 0 1 Y N N N N N 89.571 -23.889 35.056 -8.005 1.945 -1.764 C32 A1H3C 19 A1H3C C33 C20 C 0 1 Y N N N N N 89.227 -23.784 36.417 -9.200 1.353 -1.396 C33 A1H3C 20 A1H3C C34 C21 C 0 1 Y N N N N N 88.604 -22.610 36.876 -9.201 0.223 -0.598 C34 A1H3C 21 A1H3C C35 C22 C 0 1 Y N N N N N 88.328 -21.549 35.978 -8.009 -0.324 -0.169 C35 A1H3C 22 A1H3C C5 C23 C 0 1 N N R N N N 83.959 -13.707 28.907 3.929 -0.911 -0.488 C5 A1H3C 23 A1H3C C9 C24 C 0 1 N N N N N N 85.382 -17.003 28.894 0.936 -2.489 0.731 C9 A1H3C 24 A1H3C N13 N1 N 0 1 Y N N N N N 81.146 -12.748 31.152 4.588 2.367 0.835 N13 A1H3C 25 A1H3C N15 N2 N 0 1 Y N N N N N 81.966 -11.653 27.802 6.701 0.498 -1.183 N15 A1H3C 26 A1H3C N17 N3 N 0 1 Y N N N N N 79.954 -10.457 28.424 7.876 2.451 -0.799 N17 A1H3C 27 A1H3C N19 N4 N 0 1 N N N N N N 78.879 -10.684 30.474 7.029 4.210 0.523 N19 A1H3C 28 A1H3C N8 N5 N 0 1 Y N N N N N 82.752 -13.160 29.603 4.458 0.398 -0.096 N8 A1H3C 29 A1H3C O28 O1 O 0 1 N N N N N N 91.584 -19.687 32.683 -4.036 2.654 1.623 O28 A1H3C 30 A1H3C O29 O2 O 0 1 N N N N N N 90.709 -21.319 31.498 -6.045 2.320 0.740 O29 A1H3C 31 A1H3C O4 O3 O 0 1 N N N N N N 83.884 -15.088 28.920 2.495 -0.950 -0.321 O4 A1H3C 32 A1H3C O6 O4 O 0 1 N N N N N N 87.091 -14.154 28.047 3.757 -4.109 -0.595 O6 A1H3C 33 A1H3C O7 O5 O 0 1 N N N N N N 85.835 -12.126 29.374 5.707 -2.514 0.053 O7 A1H3C 34 A1H3C S10 S1 S 0 1 N N N N N N 85.195 -17.173 30.690 -0.531 -1.710 0.003 S10 A1H3C 35 A1H3C H36 H1 H 0 1 N N N N N N 85.165 -13.579 30.687 4.483 -1.647 1.499 H36 A1H3C 36 A1H3C H44 H2 H 0 1 N N N N N N 82.692 -14.120 31.541 2.852 1.196 1.128 H44 A1H3C 37 A1H3C H45 H3 H 0 1 N N N N N N 80.959 -10.295 26.643 8.583 0.879 -1.945 H45 A1H3C 38 A1H3C H37 H4 H 0 1 N N N N N N 86.700 -15.044 29.887 3.108 -3.541 1.297 H37 A1H3C 39 A1H3C H48 H5 H 0 1 N N N N N N 87.553 -16.974 30.376 -1.506 -1.522 2.196 H48 A1H3C 40 A1H3C H49 H6 H 0 1 N N N N N N 87.002 -16.173 31.887 -1.936 -3.062 1.415 H49 A1H3C 41 A1H3C H50 H7 H 0 1 N N N N N N 85.655 -18.416 33.259 -3.748 -3.182 -0.185 H50 A1H3C 42 A1H3C H51 H8 H 0 1 N N N N N N 86.430 -20.310 34.616 -5.878 -2.228 -0.953 H51 A1H3C 43 A1H3C H52 H9 H 0 1 N N N N N N 89.354 -18.378 31.118 -2.724 0.505 1.695 H52 A1H3C 44 A1H3C H38 H10 H 0 1 N N N N N N 85.202 -15.497 27.360 1.857 -2.720 -1.208 H38 A1H3C 45 A1H3C H53 H11 H 0 1 N N N N N N 89.556 -22.932 33.125 -5.875 1.875 -1.623 H53 A1H3C 46 A1H3C H54 H12 H 0 1 N N N N N N 90.051 -24.784 34.690 -8.011 2.828 -2.387 H54 A1H3C 47 A1H3C H55 H13 H 0 1 N N N N N N 89.439 -24.594 37.099 -10.136 1.775 -1.732 H55 A1H3C 48 A1H3C H56 H14 H 0 1 N N N N N N 88.335 -22.516 37.918 -10.137 -0.235 -0.313 H56 A1H3C 49 A1H3C H57 H15 H 0 1 N N N N N N 87.846 -20.657 36.350 -8.011 -1.206 0.454 H57 A1H3C 50 A1H3C H39 H16 H 0 1 N N N N N N 84.000 -13.319 27.879 4.202 -1.143 -1.517 H39 A1H3C 51 A1H3C H43 H17 H 0 1 N N N N N N 84.649 -17.652 28.392 0.740 -3.547 0.900 H43 A1H3C 52 A1H3C H42 H18 H 0 1 N N N N N N 86.399 -17.308 28.607 1.170 -2.007 1.681 H42 A1H3C 53 A1H3C H47 H19 H 0 1 N N N N N N 78.295 -10.013 30.017 6.312 4.569 1.070 H47 A1H3C 54 A1H3C H46 H20 H 0 1 N N N N N N 78.340 -11.495 30.701 7.833 4.732 0.377 H46 A1H3C 55 A1H3C H1 H21 H 0 1 N N N N N N 92.379 -20.068 32.329 -4.299 3.563 1.821 H1 A1H3C 56 A1H3C H40 H22 H 0 1 N N N N N N 87.593 -14.906 27.755 4.555 -4.583 -0.326 H40 A1H3C 57 A1H3C H41 H23 H 0 1 N N N N N N 85.252 -11.470 29.738 6.025 -3.267 0.570 H41 A1H3C 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3C C1 C2 SING N N 1 A1H3C C1 C5 SING N N 2 A1H3C O7 C1 SING N N 3 A1H3C C2 C3 SING N N 4 A1H3C O6 C2 SING N N 5 A1H3C O4 C3 SING N N 6 A1H3C C3 C9 SING N N 7 A1H3C C5 O4 SING N N 8 A1H3C N8 C5 SING N N 9 A1H3C C11 N8 SING Y N 10 A1H3C C14 N8 SING Y N 11 A1H3C C9 S10 SING N N 12 A1H3C S10 C20 SING N N 13 A1H3C C11 C12 DOUB Y N 14 A1H3C N15 C11 SING Y N 15 A1H3C C12 N13 SING Y N 16 A1H3C C12 C18 SING Y N 17 A1H3C N13 C14 DOUB Y N 18 A1H3C C16 N15 DOUB Y N 19 A1H3C N17 C16 SING Y N 20 A1H3C C18 N17 DOUB Y N 21 A1H3C N19 C18 SING N N 22 A1H3C C20 C21 SING N N 23 A1H3C C21 C22 DOUB Y N 24 A1H3C C21 C26 SING Y N 25 A1H3C C22 C23 SING Y N 26 A1H3C C23 C24 DOUB Y N 27 A1H3C C24 C25 SING Y N 28 A1H3C C30 C24 SING N N 29 A1H3C C26 C25 DOUB Y N 30 A1H3C C25 C27 SING N N 31 A1H3C O28 C27 SING N N 32 A1H3C C27 O29 DOUB N N 33 A1H3C C30 C31 DOUB Y N 34 A1H3C C35 C30 SING Y N 35 A1H3C C31 C32 SING Y N 36 A1H3C C32 C33 DOUB Y N 37 A1H3C C33 C34 SING Y N 38 A1H3C C34 C35 DOUB Y N 39 A1H3C C1 H36 SING N N 40 A1H3C C14 H44 SING N N 41 A1H3C C16 H45 SING N N 42 A1H3C C2 H37 SING N N 43 A1H3C C20 H48 SING N N 44 A1H3C C20 H49 SING N N 45 A1H3C C22 H50 SING N N 46 A1H3C C23 H51 SING N N 47 A1H3C C26 H52 SING N N 48 A1H3C C3 H38 SING N N 49 A1H3C C31 H53 SING N N 50 A1H3C C32 H54 SING N N 51 A1H3C C33 H55 SING N N 52 A1H3C C34 H56 SING N N 53 A1H3C C35 H57 SING N N 54 A1H3C C5 H39 SING N N 55 A1H3C C9 H43 SING N N 56 A1H3C C9 H42 SING N N 57 A1H3C N19 H47 SING N N 58 A1H3C N19 H46 SING N N 59 A1H3C O28 H1 SING N N 60 A1H3C O6 H40 SING N N 61 A1H3C O7 H41 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3C InChI InChI 1.06 "InChI=1S/C24H23N5O5S/c25-21-18-22(27-11-26-21)29(12-28-18)23-20(31)19(30)17(34-23)10-35-9-13-6-7-15(16(8-13)24(32)33)14-4-2-1-3-5-14/h1-8,11-12,17,19-20,23,30-31H,9-10H2,(H,32,33)(H2,25,26,27)" A1H3C InChIKey InChI 1.06 UYWKUMPLJFKERM-UHFFFAOYSA-N A1H3C SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCc4ccc(c5ccccc5)c(c4)C(O)=O)[C@H](O)[C@@H]3O" A1H3C SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCc4ccc(c5ccccc5)c(c4)C(O)=O)[CH](O)[CH]3O" A1H3C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2C(=O)O)CSC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" A1H3C SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2C(=O)O)CSCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id A1H3C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-2-phenyl-benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3C "Create component" 2024-02-01 PDBE A1H3C "Initial release" 2024-02-14 RCSB #