data_A1H3E # _chem_comp.id A1H3E _chem_comp.name "3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-(3-oxidanylprop-1-ynyl)benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-01 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.502 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RV7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3E C14 C1 C 0 1 Y N N N N N 82.317 -13.327 30.616 -3.730 -1.306 0.441 C14 A1H3E 1 A1H3E O4 O1 O 0 1 N N N N N N 83.725 -15.134 28.633 -2.050 0.881 -0.151 O4 A1H3E 2 A1H3E C12 C2 C 0 1 Y N N N N N 80.976 -11.852 29.761 -5.738 -1.769 -0.234 C12 A1H3E 3 A1H3E C11 C3 C 0 1 Y N N N N N 81.958 -12.179 28.837 -5.468 -0.440 -0.603 C11 A1H3E 4 A1H3E C9 C4 C 0 1 N N N N N N 85.156 -16.959 28.738 -0.306 1.956 1.154 C9 A1H3E 5 A1H3E C1 C5 C 0 1 N N R N N N 85.174 -13.437 29.463 -3.830 2.065 0.831 C1 A1H3E 6 A1H3E C2 C6 C 0 1 N N S N N N 85.993 -14.446 29.020 -2.584 2.982 0.877 C2 A1H3E 7 A1H3E C5 C7 C 0 1 N N R N N N 83.813 -13.582 28.759 -3.470 1.087 -0.317 C5 A1H3E 8 A1H3E C3 C8 C 0 1 N N S N N N 84.967 -15.509 28.324 -1.479 2.155 0.192 C3 A1H3E 9 A1H3E C16 C9 C 0 1 Y N N N N N 80.986 -10.729 27.339 -7.564 -0.292 -1.535 C16 A1H3E 10 A1H3E C18 C10 C 0 1 Y N N N N N 80.007 -10.888 29.401 -6.993 -2.308 -0.565 C18 A1H3E 11 A1H3E C20 C11 C 0 1 N N N N N N 87.013 -17.631 30.580 2.323 0.968 1.573 C20 A1H3E 12 A1H3E C21 C12 C 0 1 Y N N N N N 87.499 -17.773 32.027 3.533 0.274 1.003 C21 A1H3E 13 A1H3E C22 C13 C 0 1 Y N N N N N 87.996 -16.668 32.708 4.535 1.016 0.411 C22 A1H3E 14 A1H3E C23 C14 C 0 1 Y N N N N N 88.448 -16.789 34.020 5.659 0.380 -0.120 C23 A1H3E 15 A1H3E C24 C15 C 0 1 Y N N N N N 88.373 -18.026 34.661 5.768 -1.007 -0.052 C24 A1H3E 16 A1H3E C25 C16 C 0 1 Y N N N N N 87.866 -19.138 33.948 4.753 -1.751 0.548 C25 A1H3E 17 A1H3E C26 C17 C 0 1 Y N N N N N 87.440 -19.005 32.643 3.636 -1.101 1.079 C26 A1H3E 18 A1H3E C27 C18 C 0 1 N N N N N N 87.758 -20.564 34.586 4.859 -3.222 0.625 C27 A1H3E 19 A1H3E C30 C19 C 0 1 N N N N N N 88.961 -15.470 34.661 6.731 1.176 -0.754 C30 A1H3E 20 A1H3E C31 C20 C 0 1 N N N N N N 89.266 -15.333 35.933 7.798 0.571 -1.257 C31 A1H3E 21 A1H3E C32 C21 C 0 1 N N N N N N 89.728 -13.961 36.447 8.890 1.383 -1.904 C32 A1H3E 22 A1H3E N13 N1 N 0 1 Y N N N N N 81.231 -12.599 30.862 -4.636 -2.239 0.398 N13 A1H3E 23 A1H3E N15 N2 N 0 1 Y N N N N N 81.940 -11.603 27.636 -6.402 0.254 -1.246 N15 A1H3E 24 A1H3E N17 N3 N 0 1 Y N N N N N 80.040 -10.351 28.184 -7.863 -1.537 -1.209 N17 A1H3E 25 A1H3E N19 N4 N 0 1 N N N N N N 78.956 -10.484 30.337 -7.315 -3.611 -0.229 N19 A1H3E 26 A1H3E N8 N5 N 0 1 Y N N N N N 82.757 -13.079 29.395 -4.195 -0.177 -0.164 N8 A1H3E 27 A1H3E O28 O2 O 0 1 N N N N N N 87.485 -21.513 33.862 3.974 -3.869 1.147 O28 A1H3E 28 A1H3E O29 O3 O 0 1 N N N N N N 87.939 -20.712 35.842 5.939 -3.847 0.116 O29 A1H3E 29 A1H3E O33 O4 O 0 1 N N N N N N 90.919 -14.187 37.233 10.162 0.917 -1.449 O33 A1H3E 30 A1H3E O6 O5 O 0 1 N N N N N N 86.906 -14.151 27.960 -2.825 4.190 0.153 O6 A1H3E 31 A1H3E O7 O6 O 0 1 N N N N N N 85.765 -12.090 29.173 -5.004 2.814 0.512 O7 A1H3E 32 A1H3E S10 S1 S 0 1 N N N N N N 85.267 -17.050 30.558 1.047 1.110 0.291 S10 A1H3E 33 A1H3E H141 H1 H 0 0 N N N N N N 82.771 -14.018 31.311 -2.754 -1.410 0.892 H141 A1H3E 34 A1H3E H92 H2 H 0 1 N N N N N N 84.300 -17.556 28.391 0.041 2.927 1.510 H92 A1H3E 35 A1H3E H91 H3 H 0 1 N N N N N N 86.082 -17.352 28.292 -0.629 1.353 2.002 H91 A1H3E 36 A1H3E H11 H4 H 0 1 N N N N N N 85.010 -13.523 30.547 -3.955 1.530 1.772 H11 A1H3E 37 A1H3E H21 H5 H 0 1 N N N N N N 86.505 -14.954 29.851 -2.311 3.203 1.909 H21 A1H3E 38 A1H3E H51 H6 H 0 1 N N N N N N 83.903 -13.164 27.746 -3.682 1.537 -1.286 H51 A1H3E 39 A1H3E H31 H7 H 0 1 N N N N N N 85.132 -15.442 27.238 -1.138 2.665 -0.708 H31 A1H3E 40 A1H3E H161 H8 H 0 0 N N N N N N 80.981 -10.300 26.348 -8.300 0.299 -2.058 H161 A1H3E 41 A1H3E H202 H9 H 0 0 N N N N N N 87.646 -16.902 30.053 1.933 0.389 2.411 H202 A1H3E 42 A1H3E H201 H10 H 0 0 N N N N N N 87.079 -18.607 30.076 2.603 1.963 1.918 H201 A1H3E 43 A1H3E H221 H11 H 0 0 N N N N N N 88.032 -15.707 32.216 4.450 2.092 0.359 H221 A1H3E 44 A1H3E H241 H12 H 0 0 N N N N N N 88.697 -18.133 35.686 6.635 -1.504 -0.461 H241 A1H3E 45 A1H3E H261 H13 H 0 0 N N N N N N 87.062 -19.862 32.106 2.850 -1.675 1.547 H261 A1H3E 46 A1H3E H322 H16 H 0 0 N N N N N N 89.954 -13.296 35.600 8.830 1.276 -2.987 H322 A1H3E 47 A1H3E H321 H17 H 0 0 N N N N N N 88.944 -13.507 37.070 8.770 2.433 -1.635 H321 A1H3E 48 A1H3E H191 H18 H 0 0 N N N N N N 78.362 -9.809 29.900 -6.672 -4.164 0.241 H191 A1H3E 49 A1H3E H192 H19 H 0 0 N N N N N N 78.416 -11.284 30.597 -8.185 -3.971 -0.462 H192 A1H3E 50 A1H3E H1 H20 H 0 1 N N N N N N 87.828 -21.627 36.073 5.964 -4.811 0.190 H1 A1H3E 51 A1H3E H331 H21 H 0 0 N N N N N N 91.238 -13.358 37.571 10.914 1.396 -1.825 H331 A1H3E 52 A1H3E H61 H22 H 0 1 N N N N N N 87.410 -14.928 27.750 -3.551 4.723 0.507 H61 A1H3E 53 A1H3E H71 H23 H 0 1 N N N N N N 85.179 -11.412 29.489 -5.219 3.502 1.157 H71 A1H3E 54 A1H3E H301 H24 H 0 0 N N N N N N 89.075 -14.609 34.020 6.646 2.252 -0.807 H301 A1H3E 55 A1H3E H311 H25 H 0 0 N N N N N N 89.193 -16.174 36.607 7.883 -0.504 -1.205 H311 A1H3E 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3E C1 C2 SING N N 1 A1H3E C1 C5 SING N N 2 A1H3E C1 O7 SING N N 3 A1H3E C11 C12 DOUB Y N 4 A1H3E C11 N15 SING Y N 5 A1H3E C11 N8 SING Y N 6 A1H3E C12 C18 SING Y N 7 A1H3E C12 N13 SING Y N 8 A1H3E C14 N13 DOUB Y N 9 A1H3E C14 N8 SING Y N 10 A1H3E C16 N15 DOUB Y N 11 A1H3E C16 N17 SING Y N 12 A1H3E C18 N17 DOUB Y N 13 A1H3E C18 N19 SING N N 14 A1H3E C2 C3 SING N N 15 A1H3E C2 O6 SING N N 16 A1H3E C20 C21 SING N N 17 A1H3E C20 S10 SING N N 18 A1H3E C21 C22 DOUB Y N 19 A1H3E C21 C26 SING Y N 20 A1H3E C22 C23 SING Y N 21 A1H3E C23 C24 DOUB Y N 22 A1H3E C23 C30 SING N N 23 A1H3E C24 C25 SING Y N 24 A1H3E C25 C26 DOUB Y N 25 A1H3E C25 C27 SING N N 26 A1H3E C27 O28 DOUB N N 27 A1H3E C27 O29 SING N N 28 A1H3E C3 C9 SING N N 29 A1H3E C3 O4 SING N N 30 A1H3E C30 C31 DOUB N E 31 A1H3E C31 C32 SING N N 32 A1H3E C32 O33 SING N N 33 A1H3E C5 N8 SING N N 34 A1H3E C5 O4 SING N N 35 A1H3E C9 S10 SING N N 36 A1H3E C14 H141 SING N N 37 A1H3E C9 H92 SING N N 38 A1H3E C9 H91 SING N N 39 A1H3E C1 H11 SING N N 40 A1H3E C2 H21 SING N N 41 A1H3E C5 H51 SING N N 42 A1H3E C3 H31 SING N N 43 A1H3E C16 H161 SING N N 44 A1H3E C20 H202 SING N N 45 A1H3E C20 H201 SING N N 46 A1H3E C22 H221 SING N N 47 A1H3E C24 H241 SING N N 48 A1H3E C26 H261 SING N N 49 A1H3E C32 H322 SING N N 50 A1H3E C32 H321 SING N N 51 A1H3E N19 H191 SING N N 52 A1H3E N19 H192 SING N N 53 A1H3E O29 H1 SING N N 54 A1H3E O33 H331 SING N N 55 A1H3E O6 H61 SING N N 56 A1H3E O7 H71 SING N N 57 A1H3E C30 H301 SING N N 58 A1H3E C31 H311 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3E InChI InChI 1.06 "InChI=1S/C21H23N5O6S/c22-18-15-19(24-9-23-18)26(10-25-15)20-17(29)16(28)14(32-20)8-33-7-12-4-11(2-1-3-27)5-13(6-12)21(30)31/h1-2,4-6,9-10,14,16-17,20,27-29H,3,7-8H2,(H,30,31)(H2,22,23,24)/b2-1+/t14-,16-,17-,20-/m1/s1" A1H3E InChIKey InChI 1.06 HVLWKBDZYHPIQO-FEIMRTCESA-N A1H3E SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCc4cc(\C=C\CO)cc(c4)C(O)=O)[C@@H](O)[C@H]3O" A1H3E SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCc4cc(C=CCO)cc(c4)C(O)=O)[CH](O)[CH]3O" A1H3E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(cc1/C=C/CO)C(=O)O)CSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" A1H3E SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(cc1C=CCO)C(=O)O)CSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # _pdbx_chem_comp_identifier.comp_id A1H3E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanylmethyl]-5-[(~{E})-3-oxidanylprop-1-enyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3E "Create component" 2024-02-01 PDBE A1H3E "Modify coordinates" 2024-02-01 PDBE A1H3E "Initial release" 2024-02-14 RCSB #