data_A1H3F # _chem_comp.id A1H3F _chem_comp.name "1-[3-[[5-[4-[2-(dimethylamino)ethoxy]-6-methyl-pyrimidin-5-yl]pyridin-2-yl]methyl]-1,2,3-oxadiazol-3-ium-5-yl]-3-[3-(trifluoromethyl)phenyl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 F3 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2024-02-02 _chem_comp.pdbx_modified_date 2025-10-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RS7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3F C2 C1 C 0 1 N N N N N N 16.354 -19.087 -24.047 9.323 -1.215 -1.215 C2 A1H3F 1 A1H3F C5 C2 C 0 1 Y N N N N N 15.207 -18.147 -23.767 8.292 -0.667 -0.262 C5 A1H3F 2 A1H3F C6 C3 C 0 1 Y N N N N N 14.548 -18.265 -22.554 7.284 0.151 -0.731 C6 A1H3F 3 A1H3F C7 C4 C 0 1 Y N N N N N 13.467 -17.438 -22.242 6.335 0.655 0.149 C7 A1H3F 4 A1H3F C8 C5 C 0 1 Y N N N N N 13.064 -16.471 -23.165 6.404 0.335 1.498 C8 A1H3F 5 A1H3F C12 C6 C 0 1 N N N N N N 12.468 -18.695 -20.375 4.082 1.416 0.224 C12 A1H3F 6 A1H3F C15 C7 C 0 1 Y N N N N N 11.410 -19.685 -18.407 1.806 2.073 0.270 C15 A1H3F 7 A1H3F C16 C8 C 0 1 Y N N N N N 11.958 -20.927 -18.230 0.686 2.739 -0.133 C16 A1H3F 8 A1H3F C18 C9 C 0 1 N N N N N N 11.288 -22.890 -16.807 -1.669 2.787 0.709 C18 A1H3F 9 A1H3F C19 C10 C 0 1 Y N N N N N 10.453 -23.801 -17.675 -2.574 1.584 0.642 C19 A1H3F 10 A1H3F C21 C11 C 0 1 Y N N N N N 8.395 -24.255 -18.653 -3.184 -0.359 -0.436 C21 A1H3F 11 A1H3F C23 C12 C 0 1 Y N N N N N 10.238 -25.761 -19.041 -4.385 0.310 1.537 C23 A1H3F 12 A1H3F C24 C13 C 0 1 Y N N N N N 11.018 -24.939 -18.239 -3.556 1.417 1.602 C24 A1H3F 13 A1H3F C27 C14 C 0 1 N N N N N N 7.665 -24.440 -21.844 -3.051 -3.272 0.803 C27 A1H3F 14 A1H3F C31 C15 C 0 1 Y N N N N N 7.769 -27.612 -19.692 -6.429 -1.686 0.118 C31 A1H3F 15 A1H3F C33 C16 C 0 1 N N N N N N 8.062 -29.416 -18.094 -8.404 -0.436 -0.295 C33 A1H3F 16 A1H3F C34 C17 C 0 1 N N N N N N 8.713 -29.644 -16.725 -8.865 1.016 -0.433 C34 A1H3F 17 A1H3F C36 C18 C 0 1 N N N N N N 8.572 -28.728 -14.464 -8.595 0.957 -2.839 C36 A1H3F 18 A1H3F C37 C19 C 0 1 N N N N N N 6.863 -30.245 -15.237 -8.493 3.070 -1.661 C37 A1H3F 19 A1H3F F1 F1 F 0 1 N N N N N N 17.165 -18.610 -25.074 9.775 -2.455 -0.752 F1 A1H3F 20 A1H3F F3 F2 F 0 1 N N N N N N 15.824 -20.325 -24.420 8.749 -1.371 -2.482 F3 A1H3F 21 A1H3F F4 F3 F 0 1 N N N N N N 17.143 -19.238 -22.900 10.400 -0.326 -1.298 F4 A1H3F 22 A1H3F C9 C20 C 0 1 Y N N N N N 13.722 -16.352 -24.381 7.415 -0.484 1.961 C9 A1H3F 23 A1H3F C10 C21 C 0 1 Y N N N N N 14.789 -17.188 -24.688 8.355 -0.989 1.082 C10 A1H3F 24 A1H3F N11 N1 N 0 1 N N N N N N 12.784 -17.530 -21.013 5.311 1.485 -0.323 N11 A1H3F 25 A1H3F O13 O1 O 0 1 N N N N N N 12.760 -19.785 -20.832 3.884 0.699 1.186 O13 A1H3F 26 A1H3F N14 N2 N 0 1 N N N N N N 11.808 -18.606 -19.197 3.072 2.143 -0.294 N14 A1H3F 27 A1H3F N17 N3 N 1 1 Y N N N N N 11.160 -21.528 -17.331 -0.271 2.347 0.722 N17 A1H3F 28 A1H3F N20 N4 N 0 1 Y N N N N N 9.179 -23.502 -17.900 -2.420 0.709 -0.333 N20 A1H3F 29 A1H3F C22 C22 C 0 1 Y N N N N N 8.895 -25.414 -19.260 -4.193 -0.601 0.495 C22 A1H3F 30 A1H3F C25 C23 C 0 1 Y N N N N N 8.031 -26.281 -20.104 -5.053 -1.804 0.378 C25 A1H3F 31 A1H3F C26 C24 C 0 1 Y N N N N N 7.451 -25.836 -21.311 -4.520 -3.083 0.524 C26 A1H3F 32 A1H3F N28 N5 N 0 1 Y N N N N N 6.690 -26.679 -22.009 -5.323 -4.130 0.412 N28 A1H3F 33 A1H3F C29 C25 C 0 1 Y N N N N N 6.467 -27.916 -21.592 -6.609 -3.979 0.168 C29 A1H3F 34 A1H3F N30 N6 N 0 1 Y N N N N N 6.988 -28.378 -20.465 -7.160 -2.789 0.028 N30 A1H3F 35 A1H3F O32 O2 O 0 1 N N N N N N 8.308 -28.076 -18.527 -7.000 -0.467 -0.033 O32 A1H3F 36 A1H3F N35 N7 N 0 1 N N N N N N 7.817 -29.196 -15.639 -8.205 1.631 -1.593 N35 A1H3F 37 A1H3F N38 N8 N 0 1 Y N N N N N 10.235 -20.703 -17.003 0.251 1.519 1.555 N38 A1H3F 38 A1H3F O39 O3 O 0 1 Y N N N N N 10.352 -19.651 -17.582 1.428 1.338 1.331 O39 A1H3F 39 A1H3F H1 H1 H 0 1 N N N N N N 14.875 -19.007 -21.840 7.233 0.399 -1.781 H1 A1H3F 40 A1H3F H2 H2 H 0 1 N N N N N N 12.239 -15.814 -22.932 5.667 0.725 2.185 H2 A1H3F 41 A1H3F H3 H3 H 0 1 N N N N N N 12.837 -21.334 -18.707 0.591 3.430 -0.958 H3 A1H3F 42 A1H3F H4 H4 H 0 1 N N N N N N 10.925 -22.927 -15.769 -1.842 3.420 -0.162 H4 A1H3F 43 A1H3F H5 H5 H 0 1 N N N N N N 12.341 -23.205 -16.839 -1.881 3.352 1.616 H5 A1H3F 44 A1H3F H6 H6 H 0 1 N N N N N N 7.363 -23.975 -18.801 -3.028 -1.053 -1.248 H6 A1H3F 45 A1H3F H7 H7 H 0 1 N N N N N N 10.656 -26.651 -19.488 -5.160 0.155 2.273 H7 A1H3F 46 A1H3F H8 H8 H 0 1 N N N N N N 12.054 -25.181 -18.055 -3.674 2.142 2.393 H8 A1H3F 47 A1H3F H9 H9 H 0 1 N N N N N N 7.123 -24.322 -22.794 -2.885 -3.281 1.880 H9 A1H3F 48 A1H3F H10 H10 H 0 1 N N N N N N 7.290 -23.707 -21.114 -2.719 -4.218 0.376 H10 A1H3F 49 A1H3F H11 H11 H 0 1 N N N N N N 8.739 -24.273 -22.012 -2.488 -2.453 0.355 H11 A1H3F 50 A1H3F H12 H12 H 0 1 N N N N N N 6.977 -29.582 -18.015 -8.938 -0.910 0.529 H12 A1H3F 51 A1H3F H13 H13 H 0 1 N N N N N N 8.488 -30.120 -18.824 -8.613 -0.973 -1.220 H13 A1H3F 52 A1H3F H14 H14 H 0 1 N N N N N N 8.924 -30.716 -16.600 -9.946 1.043 -0.574 H14 A1H3F 53 A1H3F H15 H15 H 0 1 N N N N N N 9.654 -29.077 -16.674 -8.603 1.568 0.469 H15 A1H3F 54 A1H3F H16 H16 H 0 1 N N N N N N 7.870 -28.405 -13.681 -9.674 1.032 -2.971 H16 A1H3F 55 A1H3F H17 H17 H 0 1 N N N N N N 9.197 -29.548 -14.080 -8.092 1.432 -3.681 H17 A1H3F 56 A1H3F H18 H18 H 0 1 N N N N N N 9.213 -27.882 -14.753 -8.307 -0.093 -2.789 H18 A1H3F 57 A1H3F H19 H19 H 0 1 N N N N N N 6.220 -29.866 -14.429 -8.055 3.569 -0.796 H19 A1H3F 58 A1H3F H20 H20 H 0 1 N N N N N N 6.241 -30.525 -16.100 -8.066 3.483 -2.574 H20 A1H3F 59 A1H3F H21 H21 H 0 1 N N N N N N 7.416 -31.127 -14.882 -9.572 3.225 -1.661 H21 A1H3F 60 A1H3F H22 H22 H 0 1 N N N N N N 13.403 -15.605 -25.093 7.469 -0.734 3.011 H22 A1H3F 61 A1H3F H23 H23 H 0 1 N N N N N N 15.293 -17.095 -25.638 9.145 -1.629 1.447 H23 A1H3F 62 A1H3F H24 H24 H 0 1 N N N N N N 12.509 -16.675 -20.574 5.487 2.109 -1.045 H24 A1H3F 63 A1H3F H25 H25 H 0 1 N N N N N N 11.587 -17.689 -18.865 3.230 2.715 -1.061 H25 A1H3F 64 A1H3F H26 H26 H 0 1 N N N N N N 5.843 -28.566 -22.187 -7.232 -4.857 0.083 H26 A1H3F 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3F F1 C2 SING N N 1 A1H3F C10 C9 DOUB Y N 2 A1H3F C10 C5 SING Y N 3 A1H3F F3 C2 SING N N 4 A1H3F C9 C8 SING Y N 5 A1H3F C2 C5 SING N N 6 A1H3F C2 F4 SING N N 7 A1H3F C5 C6 DOUB Y N 8 A1H3F C8 C7 DOUB Y N 9 A1H3F C6 C7 SING Y N 10 A1H3F C7 N11 SING N N 11 A1H3F N28 C29 DOUB Y N 12 A1H3F N28 C26 SING Y N 13 A1H3F C27 C26 SING N N 14 A1H3F C29 N30 SING Y N 15 A1H3F C26 C25 DOUB Y N 16 A1H3F N11 C12 SING N N 17 A1H3F O13 C12 DOUB N N 18 A1H3F N30 C31 DOUB Y N 19 A1H3F C12 N14 SING N N 20 A1H3F C25 C31 SING Y N 21 A1H3F C25 C22 SING N N 22 A1H3F C31 O32 SING N N 23 A1H3F C22 C23 DOUB Y N 24 A1H3F C22 C21 SING Y N 25 A1H3F N14 C15 SING N N 26 A1H3F C23 C24 SING Y N 27 A1H3F C21 N20 DOUB Y N 28 A1H3F O32 C33 SING N N 29 A1H3F C15 C16 DOUB Y N 30 A1H3F C15 O39 SING Y N 31 A1H3F C24 C19 DOUB Y N 32 A1H3F C16 N17 SING Y N 33 A1H3F C33 C34 SING N N 34 A1H3F N20 C19 SING Y N 35 A1H3F C19 C18 SING N N 36 A1H3F O39 N38 SING Y N 37 A1H3F N17 N38 DOUB Y N 38 A1H3F N17 C18 SING N N 39 A1H3F C34 N35 SING N N 40 A1H3F N35 C37 SING N N 41 A1H3F N35 C36 SING N N 42 A1H3F C6 H1 SING N N 43 A1H3F C8 H2 SING N N 44 A1H3F C16 H3 SING N N 45 A1H3F C18 H4 SING N N 46 A1H3F C18 H5 SING N N 47 A1H3F C21 H6 SING N N 48 A1H3F C23 H7 SING N N 49 A1H3F C24 H8 SING N N 50 A1H3F C27 H9 SING N N 51 A1H3F C27 H10 SING N N 52 A1H3F C27 H11 SING N N 53 A1H3F C33 H12 SING N N 54 A1H3F C33 H13 SING N N 55 A1H3F C34 H14 SING N N 56 A1H3F C34 H15 SING N N 57 A1H3F C36 H16 SING N N 58 A1H3F C36 H17 SING N N 59 A1H3F C36 H18 SING N N 60 A1H3F C37 H19 SING N N 61 A1H3F C37 H20 SING N N 62 A1H3F C37 H21 SING N N 63 A1H3F C9 H22 SING N N 64 A1H3F C10 H23 SING N N 65 A1H3F N11 H24 SING N N 66 A1H3F N14 H25 SING N N 67 A1H3F C29 H26 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3F InChI InChI 1.06 "InChI=1S/C25H25F3N8O3/c1-16-22(23(31-15-30-16)38-10-9-35(2)3)17-7-8-20(29-12-17)13-36-14-21(39-34-36)33-24(37)32-19-6-4-5-18(11-19)25(26,27)28/h4-8,11-12,14-15H,9-10,13H2,1-3H3,(H-,32,33,34,37)/p+1" A1H3F InChIKey InChI 1.06 RCCQGUWPTDCULB-UHFFFAOYSA-O A1H3F SMILES_CANONICAL CACTVS 3.385 "CN(C)CCOc1ncnc(C)c1c2ccc(C[n+]3cc(NC(=O)Nc4cccc(c4)C(F)(F)F)on3)nc2" A1H3F SMILES CACTVS 3.385 "CN(C)CCOc1ncnc(C)c1c2ccc(C[n+]3cc(NC(=O)Nc4cccc(c4)C(F)(F)F)on3)nc2" A1H3F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(ncn1)OCCN(C)C)c2ccc(nc2)C[n+]3cc(on3)NC(=O)Nc4cccc(c4)C(F)(F)F" A1H3F SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(ncn1)OCCN(C)C)c2ccc(nc2)C[n+]3cc(on3)NC(=O)Nc4cccc(c4)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1H3F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[3-[[5-[4-[2-(dimethylamino)ethoxy]-6-methyl-pyrimidin-5-yl]pyridin-2-yl]methyl]-1,2,3-oxadiazol-3-ium-5-yl]-3-[3-(trifluoromethyl)phenyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3F "Create component" 2024-02-02 PDBE A1H3F "Initial release" 2025-11-05 RCSB #