data_A1H3M # _chem_comp.id A1H3M _chem_comp.name "(2~{S})-5-azanylidene-1-methanoyl-piperidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H11 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Avibactam _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-05 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 169.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1H3M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RWP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1H3M C5 C1 C 0 1 N N N N N N 16.462 7.928 22.694 1.614 1.766 0.107 C5 A1H3M 1 A1H3M C6 C2 C 0 1 N N N N N N 13.244 8.256 22.715 -2.001 0.511 -0.081 C6 A1H3M 2 A1H3M N1 N1 N 0 1 N N N N N N 17.983 9.879 22.387 3.352 0.183 -0.522 N1 A1H3M 3 A1H3M C2 C3 C 0 1 N N N N N N 16.828 9.371 22.528 2.236 0.387 0.070 C2 A1H3M 4 A1H3M C4 C4 C 0 1 N N N N N N 15.443 7.489 21.649 0.171 1.666 -0.399 C4 A1H3M 5 A1H3M N N2 N 0 1 N N N N N N 14.708 9.860 21.573 0.083 -0.660 0.355 N A1H3M 6 A1H3M C C5 C 0 1 N N N N N N 14.175 10.723 20.718 -0.576 -1.751 -0.080 C A1H3M 7 A1H3M O O1 O 0 1 N N N N N N 13.571 10.467 19.675 -0.031 -2.835 -0.067 O A1H3M 8 A1H3M C1 C6 C 0 1 N N N N N N 15.656 10.299 22.601 1.497 -0.745 0.754 C1 A1H3M 9 A1H3M C3 C7 C 0 1 N N S N N N 14.252 8.466 21.591 -0.594 0.641 0.442 C3 A1H3M 10 A1H3M N2 N3 N 0 1 N N N N N N 12.654 7.081 22.747 -3.036 0.975 0.647 N2 A1H3M 11 A1H3M O1 O2 O 0 1 N N N N N N 13.010 9.157 23.526 -2.203 -0.011 -1.156 O1 A1H3M 12 A1H3M H7 H1 H 0 1 N N N N N N 16.033 7.781 23.696 1.617 2.141 1.131 H7 A1H3M 13 A1H3M H8 H2 H 0 1 N N N N N N 17.369 7.314 22.589 2.180 2.443 -0.532 H8 A1H3M 14 A1H3M H4 H3 H 0 1 N N N N N N 18.702 9.184 22.395 3.813 0.919 -0.955 H4 A1H3M 15 A1H3M H6 H4 H 0 1 N N N N N N 15.073 6.486 21.907 -0.312 2.639 -0.313 H6 A1H3M 16 A1H3M H5 H5 H 0 1 N N N N N N 15.930 7.457 20.663 0.173 1.351 -1.442 H5 A1H3M 17 A1H3M H H6 H 0 1 N N N N N N 14.283 11.769 20.964 -1.590 -1.662 -0.440 H A1H3M 18 A1H3M H3 H7 H 0 1 N N N N N N 15.978 11.332 22.404 1.913 -1.702 0.440 H3 A1H3M 19 A1H3M H2 H8 H 0 1 N N N N N N 15.190 10.243 23.596 1.583 -0.641 1.836 H2 A1H3M 20 A1H3M H1 H9 H 0 1 N N N N N N 13.726 8.273 20.645 -0.620 0.969 1.481 H1 A1H3M 21 A1H3M H9 H10 H 0 1 N N N N N N 11.977 6.881 23.455 -3.942 0.892 0.311 H9 A1H3M 22 A1H3M H10 H11 H 0 1 N N N N N N 12.883 6.388 22.064 -2.875 1.393 1.508 H10 A1H3M 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1H3M O C DOUB N N 1 A1H3M C N SING N N 2 A1H3M N C1 SING N N 3 A1H3M C1 C2 SING N N 4 A1H3M N1 C2 DOUB N N 5 A1H3M N C3 SING N N 6 A1H3M C4 C3 SING N N 7 A1H3M C5 C4 SING N N 8 A1H3M C2 C5 SING N N 9 A1H3M C3 C6 SING N N 10 A1H3M N2 C6 SING N N 11 A1H3M C6 O1 DOUB N N 12 A1H3M C5 H7 SING N N 13 A1H3M C5 H8 SING N N 14 A1H3M N1 H4 SING N N 15 A1H3M C4 H6 SING N N 16 A1H3M C4 H5 SING N N 17 A1H3M C H SING N N 18 A1H3M C1 H3 SING N N 19 A1H3M C1 H2 SING N N 20 A1H3M C3 H1 SING N N 21 A1H3M N2 H9 SING N N 22 A1H3M N2 H10 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1H3M InChI InChI 1.06 "InChI=1S/C7H11N3O2/c8-5-1-2-6(7(9)12)10(3-5)4-11/h4,6,8H,1-3H2,(H2,9,12)/b8-5+/t6-/m0/s1" A1H3M InChIKey InChI 1.06 SVUBAXFAVRYYJU-YTDSJMIDSA-N A1H3M SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H]1CCC(=N)CN1C=O" A1H3M SMILES CACTVS 3.385 "NC(=O)[CH]1CCC(=N)CN1C=O" A1H3M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/1\CC[C@H](N(C1)C=O)C(=O)N" A1H3M SMILES "OpenEye OEToolkits" 2.0.7 "C1CC(=N)CN(C1C(=O)N)C=O" # _pdbx_chem_comp_identifier.comp_id A1H3M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-azanylidene-1-methanoyl-piperidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1H3M "Create component" 2024-02-05 PDBE A1H3M "Modify PCM" 2024-09-27 PDBE A1H3M "Initial release" 2025-01-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1H3M _pdbx_chem_comp_synonyms.name Avibactam _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1H3M _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #